Wall clock time and date at job start Wed Apr 1 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30012 * 127.33214 * 2 1 4 4 O 1.20659 * 112.29990 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15441 * 359.71627 * 4 3 2 6 6 C 1.50699 * 126.82761 * 180.31276 * 5 4 3 7 7 F 1.39896 * 109.47323 * 120.16909 * 6 5 4 8 8 F 1.39907 * 109.47162 * 240.16468 * 6 5 4 9 9 C 1.37355 * 106.34112 * 0.45009 * 5 4 3 10 10 C 1.47405 * 128.56428 * 179.85821 * 9 5 4 11 11 O 1.21606 * 119.99939 * 269.68073 * 10 9 5 12 12 N 1.34774 * 120.00123 * 89.67621 * 10 9 5 13 13 C 1.48121 * 127.03198 * 0.03994 * 12 10 9 14 14 C 1.54949 * 103.25094 * 140.67458 * 13 12 10 15 15 H 1.09001 * 110.73768 * 279.03790 * 14 13 12 16 16 C 1.53007 * 110.73679 * 155.71832 * 14 13 12 17 17 C 1.54614 * 102.83925 * 37.37633 * 14 13 12 18 18 H 1.09006 * 110.40916 * 97.08789 * 17 14 13 19 19 C 1.52996 * 110.32857 * 219.25578 * 17 14 13 20 20 N 1.46498 * 109.47059 * 182.07465 * 19 17 14 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 C 1.47485 * 127.03731 * 180.02562 * 12 10 9 30 30 H 1.08998 * 109.46818 * 269.95924 * 1 2 3 31 31 H 1.08996 * 109.46888 * 29.95873 * 1 2 3 32 32 H 1.08997 * 109.46951 * 149.96089 * 1 2 3 33 33 H 1.08998 * 109.47673 * 0.16221 * 6 5 4 34 34 H 1.08990 * 110.66372 * 259.11514 * 13 12 10 35 35 H 1.08998 * 110.66272 * 22.07080 * 13 12 10 36 36 H 1.09000 * 109.46468 * 306.57991 * 16 14 13 37 37 H 1.08990 * 109.47381 * 66.57962 * 16 14 13 38 38 H 1.08996 * 109.46739 * 186.58514 * 16 14 13 39 39 H 1.09004 * 109.47066 * 62.07733 * 19 17 14 40 40 H 1.08994 * 109.46974 * 302.07880 * 19 17 14 41 41 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 42 42 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.91158 * 86.11841 * 29 12 10 44 44 H 1.09001 * 110.07043 * 324.93101 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0052 6 6 4.9712 -1.3245 0.0128 7 9 5.0576 -2.1256 1.1565 8 9 5.0694 -2.1284 -1.1280 9 6 2.3992 -1.1696 -0.0006 10 6 2.0401 -2.5992 -0.0008 11 8 1.8917 -3.1887 -1.0540 12 7 1.8764 -3.2531 1.1663 13 6 2.0169 -2.6926 2.5302 14 6 0.8624 -3.3680 3.3124 15 1 -0.0816 -2.8559 3.1260 16 6 1.1728 -3.4070 4.8101 17 6 0.8364 -4.7964 2.7212 18 1 1.3924 -5.4825 3.3602 19 6 -0.6067 -5.2770 2.5558 20 7 -0.6087 -6.6488 2.0417 21 6 -1.7954 -7.2945 1.8179 22 1 -2.7300 -6.7907 2.0163 23 6 -1.7972 -8.5963 1.3362 24 7 -0.6582 -9.2103 1.0949 25 14 -3.4160 -9.4768 1.0303 26 1 -4.2082 -8.7217 0.0265 27 1 -3.1466 -10.8455 0.5211 28 1 -4.1802 -9.5633 2.3007 29 6 1.5204 -4.6729 1.3468 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5144 33 1 5.7835 -0.5977 0.0161 34 1 2.9817 -2.9625 2.9594 35 1 1.8931 -1.6098 2.5157 36 1 2.1467 -3.8706 4.9673 37 1 1.1860 -2.3912 5.2050 38 1 0.4069 -3.9870 5.3249 39 1 -1.1286 -4.6256 1.8548 40 1 -1.1115 -5.2502 3.5215 41 1 0.2307 -7.1014 1.8638 42 1 -0.6595 -10.1199 0.7580 43 1 2.4204 -5.2872 1.3231 44 1 0.8344 -4.9893 0.5610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501123342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:00 Heat of formation + Delta-G solvation = -55.799122 kcal Electronic energy + Delta-G solvation = -31184.747400 eV Core-core repulsion = 26583.874416 eV Total energy + Delta-G solvation = -4600.872984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.56029 -47.56629 -45.42107 -40.12463 -37.99982 -35.07851 -34.64774 -33.43739 -32.80147 -31.43728 -29.39898 -29.07150 -27.54383 -26.50611 -25.83791 -24.25514 -23.11987 -21.45631 -21.06677 -20.19888 -19.58804 -18.56670 -18.36330 -17.86265 -17.48610 -17.37894 -16.96090 -16.29762 -16.04394 -15.10649 -14.79748 -14.43808 -14.38248 -14.03409 -13.95113 -13.88756 -13.73601 -13.64263 -13.45716 -13.34791 -13.06161 -12.91473 -12.74589 -12.65333 -12.08347 -11.95989 -11.88075 -11.68099 -11.48687 -11.10545 -10.88616 -10.70852 -10.56557 -10.42052 -10.37481 -10.35183 -10.07037 -10.01423 -9.66120 -8.87833 -8.70927 -6.92766 -5.75420 -3.04713 0.53840 1.41317 1.80508 2.22964 2.77648 3.35781 3.45354 3.48900 3.49709 3.50796 3.61233 3.95187 4.16912 4.31122 4.39773 4.46550 4.58850 4.66437 4.79681 4.87990 5.07633 5.13580 5.26347 5.27449 5.31799 5.41060 5.47560 5.58631 5.66738 5.68191 5.74224 5.93034 6.03200 6.10238 6.13709 6.20478 6.37216 6.40601 6.68878 6.82501 7.39540 7.60976 7.70017 7.94688 8.42985 9.54255 10.10543 10.45023 11.47225 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002946 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.041527 B = 9503.602011 C = 9602.175602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.056 3.944 3 N -0.336 5.336 4 O 0.123 5.877 5 C -0.087 4.087 6 C 0.362 3.638 7 F -0.176 7.176 8 F -0.173 7.173 9 C -0.173 4.173 10 C 0.603 3.397 11 O -0.509 6.509 12 N -0.603 5.603 13 C 0.104 3.896 14 C -0.098 4.098 15 H 0.085 0.915 16 C -0.140 4.140 17 C -0.102 4.102 18 H 0.089 0.911 19 C 0.163 3.837 20 N -0.732 5.732 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.112 3.888 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 22.318 3.793 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 N -0.039 5.039 4 O 0.056 5.944 5 C -0.152 4.152 6 C 0.307 3.693 7 F -0.157 7.157 8 F -0.154 7.154 9 C -0.180 4.180 10 C 0.387 3.613 11 O -0.384 6.384 12 N -0.335 5.335 13 C -0.019 4.019 14 C -0.118 4.118 15 H 0.103 0.897 16 C -0.197 4.197 17 C -0.121 4.121 18 H 0.108 0.892 19 C 0.036 3.964 20 N -0.377 5.377 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.009 4.009 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.403 23.248 3.098 26.079 hybrid contribution -0.694 -1.537 -0.268 1.708 sum 10.710 21.711 2.829 24.373 Atomic orbital electron populations 1.20328 0.84227 1.04962 1.04377 1.24887 0.99058 0.85700 1.00848 1.73615 0.88861 1.22922 1.18472 1.84547 1.21783 1.20723 1.67369 1.24942 0.97199 0.85679 1.07386 1.19209 0.92114 0.85360 0.72655 1.93109 1.96636 1.75810 1.50191 1.93154 1.96494 1.75503 1.50233 1.22242 0.92293 0.96169 1.07304 1.16346 0.78371 0.83326 0.83208 1.90912 1.50045 1.67209 1.30240 1.48655 1.67411 1.12539 1.04935 1.22699 0.99505 0.98176 0.81539 1.22279 0.98225 0.96101 0.95191 0.89676 1.21730 1.02251 1.01649 0.94098 1.22408 0.98923 0.95825 0.94980 0.89237 1.20692 0.91397 0.87791 0.96569 1.42355 1.06518 1.10305 1.78494 1.19151 0.86040 0.95486 1.36662 0.91293 1.24734 0.96800 0.97187 1.02048 1.69645 1.24018 1.13134 1.51221 0.86274 0.83118 0.78894 0.77922 1.21262 1.21665 1.21296 1.22281 1.00307 0.79293 0.99006 0.89095 0.89452 0.89093 0.83734 0.90269 0.91037 0.92283 0.92712 0.91592 0.96303 0.95967 0.78216 0.93421 0.91211 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.49 36.01 0.38 -0.36 16 2 C 0.06 0.64 7.59 -79.77 -0.61 0.03 16 3 N -0.34 -3.75 12.01 34.78 0.42 -3.33 16 4 O 0.12 1.22 11.06 18.65 0.21 1.42 16 5 C -0.09 -0.90 6.98 -34.63 -0.24 -1.15 16 6 C 0.36 3.01 5.68 36.01 0.20 3.21 16 7 F -0.18 -1.71 17.32 2.25 0.04 -1.67 16 8 F -0.17 -2.00 17.32 2.25 0.04 -1.96 16 9 C -0.17 -2.20 5.07 -102.89 -0.52 -2.73 16 10 C 0.60 9.53 7.70 -12.53 -0.10 9.44 16 11 O -0.51 -10.24 17.45 5.27 0.09 -10.14 16 12 N -0.60 -8.66 3.29 -171.02 -0.56 -9.22 16 13 C 0.10 1.13 6.38 -2.12 -0.01 1.12 16 14 C -0.10 -1.11 3.21 -88.74 -0.28 -1.39 16 15 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 16 C -0.14 -1.30 9.16 37.16 0.34 -0.96 16 17 C -0.10 -1.52 2.64 -89.24 -0.24 -1.76 16 18 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 19 C 0.16 3.14 5.34 -4.04 -0.02 3.12 16 20 N -0.73 -18.20 5.33 -59.91 -0.32 -18.52 16 21 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 25 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 C 0.11 1.84 6.31 -2.97 -0.02 1.82 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.15 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.07 0.69 7.40 -51.93 -0.38 0.30 16 36 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.38 10.02 7.51 -40.82 -0.31 9.72 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.90 7.48 -51.93 -0.39 1.51 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -34.54 383.40 -6.06 -40.60 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.08 Total: 4.00 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.36 Total: 3.05 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.26 Total: -58.59 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.30 Total: -8.72 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.54 -6.06 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501123342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.200 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds