Wall clock time and date at job start Wed Apr 1 2020 01:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30012 * 127.33214 * 2 1 4 4 O 1.20659 * 112.29990 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15441 * 359.71627 * 4 3 2 6 6 C 1.50699 * 126.82761 * 180.31276 * 5 4 3 7 7 F 1.39896 * 109.47323 * 120.16909 * 6 5 4 8 8 F 1.39907 * 109.47162 * 240.16468 * 6 5 4 9 9 C 1.37355 * 106.34112 * 0.45009 * 5 4 3 10 10 C 1.47405 * 128.56428 * 179.85821 * 9 5 4 11 11 O 1.21606 * 119.99939 * 269.68073 * 10 9 5 12 12 N 1.34774 * 120.00123 * 89.67621 * 10 9 5 13 13 C 1.48121 * 127.03198 * 0.03994 * 12 10 9 14 14 C 1.54949 * 103.25094 * 140.67458 * 13 12 10 15 15 H 1.09001 * 110.73768 * 279.03790 * 14 13 12 16 16 C 1.53007 * 110.73679 * 155.71832 * 14 13 12 17 17 C 1.54614 * 102.83925 * 37.37633 * 14 13 12 18 18 H 1.09006 * 110.40916 * 97.08789 * 17 14 13 19 19 C 1.52996 * 110.32857 * 219.25578 * 17 14 13 20 20 N 1.46498 * 109.47059 * 182.07465 * 19 17 14 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 C 1.47485 * 127.03731 * 180.02562 * 12 10 9 30 30 H 1.08998 * 109.46818 * 269.95924 * 1 2 3 31 31 H 1.08996 * 109.46888 * 29.95873 * 1 2 3 32 32 H 1.08997 * 109.46951 * 149.96089 * 1 2 3 33 33 H 1.08998 * 109.47673 * 0.16221 * 6 5 4 34 34 H 1.08990 * 110.66372 * 259.11514 * 13 12 10 35 35 H 1.08998 * 110.66272 * 22.07080 * 13 12 10 36 36 H 1.09000 * 109.46468 * 306.57991 * 16 14 13 37 37 H 1.08990 * 109.47381 * 66.57962 * 16 14 13 38 38 H 1.08996 * 109.46739 * 186.58514 * 16 14 13 39 39 H 1.09004 * 109.47066 * 62.07733 * 19 17 14 40 40 H 1.08994 * 109.46974 * 302.07880 * 19 17 14 41 41 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 42 42 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.91158 * 86.11841 * 29 12 10 44 44 H 1.09001 * 110.07043 * 324.93101 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0052 6 6 4.9712 -1.3245 0.0128 7 9 5.0576 -2.1256 1.1565 8 9 5.0694 -2.1284 -1.1280 9 6 2.3992 -1.1696 -0.0006 10 6 2.0401 -2.5992 -0.0008 11 8 1.8917 -3.1887 -1.0540 12 7 1.8764 -3.2531 1.1663 13 6 2.0169 -2.6926 2.5302 14 6 0.8624 -3.3680 3.3124 15 1 -0.0816 -2.8559 3.1260 16 6 1.1728 -3.4070 4.8101 17 6 0.8364 -4.7964 2.7212 18 1 1.3924 -5.4825 3.3602 19 6 -0.6067 -5.2770 2.5558 20 7 -0.6087 -6.6488 2.0417 21 6 -1.7954 -7.2945 1.8179 22 1 -2.7300 -6.7907 2.0163 23 6 -1.7972 -8.5963 1.3362 24 7 -0.6582 -9.2103 1.0949 25 14 -3.4160 -9.4768 1.0303 26 1 -4.2082 -8.7217 0.0265 27 1 -3.1466 -10.8455 0.5211 28 1 -4.1802 -9.5633 2.3007 29 6 1.5204 -4.6729 1.3468 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5144 33 1 5.7835 -0.5977 0.0161 34 1 2.9817 -2.9625 2.9594 35 1 1.8931 -1.6098 2.5157 36 1 2.1467 -3.8706 4.9673 37 1 1.1860 -2.3912 5.2050 38 1 0.4069 -3.9870 5.3249 39 1 -1.1286 -4.6256 1.8548 40 1 -1.1115 -5.2502 3.5215 41 1 0.2307 -7.1014 1.8638 42 1 -0.6595 -10.1199 0.7580 43 1 2.4204 -5.2872 1.3231 44 1 0.8344 -4.9893 0.5610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501123342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:59 Heat of formation + Delta-G solvation = -78.427558 kcal Electronic energy + Delta-G solvation = -31185.728643 eV Core-core repulsion = 26583.874416 eV Total energy + Delta-G solvation = -4601.854227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.29269 -48.31960 -46.27935 -41.33371 -39.26917 -36.49091 -35.91890 -34.47834 -33.96484 -33.10834 -30.80589 -29.97869 -28.49005 -27.42893 -27.20197 -25.62357 -24.66187 -22.65306 -22.01953 -21.25070 -20.79544 -19.47783 -19.30909 -19.05867 -18.54685 -18.28312 -18.15322 -17.52158 -17.14090 -16.68770 -16.16163 -15.74185 -15.35501 -15.22006 -15.15733 -15.09328 -14.72708 -14.65716 -14.44169 -14.37493 -14.14568 -14.02848 -13.78930 -13.72796 -13.34334 -13.21559 -12.93675 -12.75534 -12.72575 -12.57271 -12.47863 -12.21222 -11.95339 -11.93550 -11.65311 -11.51349 -11.41268 -11.17937 -11.11539 -10.94267 -9.95551 -9.00944 -7.95605 -5.24566 -0.31824 0.53626 0.95035 1.08495 1.45915 1.49258 1.55219 1.66726 2.55178 2.64984 2.73489 2.87485 3.13169 3.36591 3.38790 3.42362 3.48620 3.62413 3.67916 3.76163 3.91713 4.13879 4.18555 4.23492 4.38307 4.42808 4.48062 4.52761 4.56157 4.60971 4.73540 4.81760 4.87854 4.92677 4.96009 5.05436 5.17724 5.23673 5.34896 5.47514 5.53105 6.23318 6.26334 6.73065 6.77860 7.32879 8.08350 8.30940 9.27645 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002946 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.041527 B = 9503.602011 C = 9602.175602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.056 3.944 3 N -0.343 5.343 4 O 0.140 5.860 5 C -0.066 4.066 6 C 0.355 3.645 7 F -0.184 7.184 8 F -0.195 7.195 9 C -0.207 4.207 10 C 0.603 3.397 11 O -0.567 6.567 12 N -0.599 5.599 13 C 0.106 3.894 14 C -0.087 4.087 15 H 0.087 0.913 16 C -0.135 4.135 17 C -0.091 4.091 18 H 0.094 0.906 19 C 0.164 3.836 20 N -0.745 5.745 21 C -0.248 4.248 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.972 3.028 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.274 1.274 29 C 0.117 3.883 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.208 0.792 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.010 0.990 40 H 0.033 0.967 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.349 24.851 5.640 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 N -0.045 5.045 4 O 0.073 5.927 5 C -0.131 4.131 6 C 0.300 3.700 7 F -0.165 7.165 8 F -0.176 7.176 9 C -0.214 4.214 10 C 0.390 3.610 11 O -0.447 6.447 12 N -0.331 5.331 13 C -0.015 4.015 14 C -0.106 4.106 15 H 0.106 0.894 16 C -0.192 4.192 17 C -0.110 4.110 18 H 0.112 0.888 19 C 0.038 3.962 20 N -0.388 5.388 21 C -0.380 4.380 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.801 3.199 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.200 1.200 29 C -0.006 4.006 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.225 0.775 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.051 0.949 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.880 25.848 5.006 28.884 hybrid contribution -0.830 -2.244 -0.834 2.534 sum 11.050 23.604 4.172 26.394 Atomic orbital electron populations 1.20425 0.83075 1.04894 1.05588 1.25129 0.99868 0.85048 1.00410 1.73606 0.89155 1.22739 1.18998 1.84554 1.21337 1.20194 1.66601 1.25316 0.97347 0.85654 1.04779 1.20032 0.92781 0.85712 0.71454 1.93087 1.96599 1.76256 1.50561 1.93113 1.96518 1.76353 1.51610 1.21984 0.94052 0.94678 1.10659 1.16736 0.77235 0.84431 0.82569 1.90871 1.52668 1.68839 1.32277 1.48725 1.66361 1.11706 1.06263 1.22928 1.00115 0.99318 0.79134 1.22262 0.98701 0.92976 0.96709 0.89429 1.21713 1.02373 1.03271 0.91865 1.22277 0.95841 0.98486 0.94392 0.88779 1.20822 0.94376 0.84956 0.96061 1.42573 1.05282 1.12241 1.78704 1.19584 0.87270 0.95765 1.35350 0.90717 1.25561 1.00049 0.98235 1.02789 1.69808 1.26102 1.13145 1.52821 0.85233 0.79320 0.77227 0.78114 1.20746 1.22147 1.19981 1.22046 0.99272 0.80833 0.98450 0.87197 0.87860 0.90763 0.77524 0.88564 0.88823 0.91546 0.90171 0.92269 0.97203 0.94946 0.79396 0.94011 0.91529 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.49 71.24 0.75 -0.64 16 2 C 0.06 1.20 7.59 45.16 0.34 1.54 16 3 N -0.34 -6.87 12.01 -44.78 -0.54 -7.41 16 4 O 0.14 2.39 11.06 76.97 0.85 3.24 16 5 C -0.07 -1.22 6.98 25.48 0.18 -1.04 16 6 C 0.35 5.01 5.68 71.24 0.40 5.41 16 7 F -0.18 -3.15 17.32 44.97 0.78 -2.37 16 8 F -0.19 -4.34 17.32 44.97 0.78 -3.56 16 9 C -0.21 -5.09 5.07 -18.75 -0.10 -5.18 16 10 C 0.60 19.53 7.70 86.66 0.67 20.20 16 11 O -0.57 -24.23 17.45 -4.05 -0.07 -24.30 16 12 N -0.60 -17.25 3.29 -813.25 -2.68 -19.93 16 13 C 0.11 2.07 6.38 86.73 0.55 2.62 16 14 C -0.09 -1.77 3.21 -9.58 -0.03 -1.80 16 15 H 0.09 1.79 7.86 -2.39 -0.02 1.77 16 16 C -0.13 -2.05 9.16 71.98 0.66 -1.39 16 17 C -0.09 -2.69 2.64 -9.90 -0.03 -2.71 16 18 H 0.09 2.75 7.85 -2.38 -0.02 2.73 16 19 C 0.16 6.37 5.34 86.38 0.46 6.83 16 20 N -0.75 -38.05 5.33 -343.46 -1.83 -39.88 16 21 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 24 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 25 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 28 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 29 C 0.12 3.97 6.31 86.54 0.55 4.52 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.21 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.10 1.62 8.02 -2.39 -0.02 1.60 16 35 H 0.09 1.48 7.40 -2.39 -0.02 1.47 16 36 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.37 20.33 7.51 -92.71 -0.70 19.63 16 42 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 44 H 0.05 2.15 7.48 -2.39 -0.02 2.14 16 Total: -1.00 -78.68 383.40 5.67 -73.01 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.34 Total: 20.99 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.72 Total: 11.29 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -4.76 Total: -127.24 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.78 Total: -21.06 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.56 Total: -5.93 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -78.68 5.67 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501123342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.413 kcal (2) G-P(sol) polarization free energy of solvation -78.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds