Wall clock time and date at job start Wed Apr 1 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30018 * 127.33896 * 2 1 4 4 O 1.20651 * 112.30184 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15967 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.83208 * 179.97438 * 5 4 3 7 7 F 1.39900 * 109.46715 * 30.02814 * 6 5 4 8 8 F 1.39897 * 109.47068 * 150.02725 * 6 5 4 9 9 C 1.37362 * 106.34398 * 0.26530 * 5 4 3 10 10 C 1.47394 * 128.56757 * 179.69636 * 9 5 4 11 11 O 1.21614 * 119.99478 * 90.00002 * 10 9 5 12 12 N 1.34777 * 120.00214 * 269.99917 * 10 9 5 13 13 C 1.46503 * 119.99631 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99659 * 180.02562 * 12 10 9 15 15 H 1.08997 * 109.47770 * 0.02562 * 14 12 10 16 16 C 1.53004 * 109.46789 * 120.00154 * 14 12 10 17 17 N 1.46497 * 109.47178 * 304.99562 * 16 14 12 18 18 C 1.36935 * 119.99835 * 179.97438 * 17 16 14 19 19 H 1.08007 * 120.00610 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00157 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99382 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46823 * 120.00550 * 22 20 18 25 25 H 1.48497 * 109.47057 * 240.00483 * 22 20 18 26 26 C 1.53005 * 109.46988 * 239.99781 * 14 12 10 27 27 C 1.53001 * 117.49748 * 248.75222 * 26 14 12 28 28 C 1.53002 * 117.49803 * 180.09256 * 26 14 12 29 29 H 1.09004 * 109.46677 * 90.02448 * 1 2 3 30 30 H 1.08994 * 109.47312 * 210.02394 * 1 2 3 31 31 H 1.08995 * 109.46826 * 330.02869 * 1 2 3 32 32 H 1.09000 * 109.47161 * 270.02970 * 6 5 4 33 33 H 1.09003 * 109.46915 * 90.00366 * 13 12 10 34 34 H 1.09001 * 109.46692 * 209.99827 * 13 12 10 35 35 H 1.09000 * 109.47297 * 330.00054 * 13 12 10 36 36 H 1.09007 * 109.47015 * 64.99995 * 16 14 12 37 37 H 1.09001 * 109.46920 * 184.99467 * 16 14 12 38 38 H 0.96999 * 120.00219 * 0.02562 * 17 16 14 39 39 H 0.97007 * 119.99367 * 179.97438 * 21 20 18 40 40 H 1.09001 * 115.54656 * 34.42396 * 26 14 12 41 41 H 1.09001 * 117.49985 * 359.97438 * 27 26 14 42 42 H 1.08999 * 117.49429 * 145.02725 * 27 26 14 43 43 H 1.09004 * 117.49508 * 214.98377 * 28 26 14 44 44 H 1.09002 * 117.49893 * 359.97334 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0015 6 6 4.9712 -1.3248 0.0018 7 9 5.9288 -0.5466 0.6610 8 9 4.8315 -2.5504 0.6617 9 6 2.3991 -1.1697 -0.0045 10 6 2.0401 -2.5992 -0.0123 11 8 1.8892 -3.1939 1.0377 12 7 1.8790 -3.2473 -1.1830 13 6 2.0613 -2.5309 -2.4479 14 6 1.5215 -4.6679 -1.1906 15 1 1.4295 -5.0250 -0.1649 16 6 0.1876 -4.8543 -1.9165 17 7 -0.8287 -3.9996 -1.2978 18 6 -2.1092 -3.9976 -1.7828 19 1 -2.3702 -4.6264 -2.6213 20 6 -3.0724 -3.1881 -1.1962 21 7 -2.7545 -2.4222 -0.1741 22 14 -4.8195 -3.1859 -1.8575 23 1 -4.9169 -4.1276 -3.0016 24 1 -5.7549 -3.6115 -0.7855 25 1 -5.1755 -1.8173 -2.3105 26 6 2.6106 -5.4640 -1.9126 27 6 2.2521 -6.0875 -3.2630 28 6 2.4197 -6.9776 -2.0288 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 5.2899 -1.4996 -1.0258 33 1 3.1031 -2.6040 -2.7599 34 1 1.4214 -2.9732 -3.2114 35 1 1.7950 -1.4825 -2.3133 36 1 0.3033 -4.5804 -2.9653 37 1 -0.1222 -5.8969 -1.8454 38 1 -0.5943 -3.4346 -0.5450 39 1 -3.4275 -1.8563 0.2355 40 1 3.6275 -5.0934 -1.7833 41 1 1.2402 -5.9310 -3.6368 42 1 3.0333 -6.1277 -4.0220 43 1 3.3111 -7.6028 -1.9765 44 1 1.5184 -7.4063 -1.5906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507012357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:39 Heat of formation + Delta-G solvation = -18.353799 kcal Electronic energy + Delta-G solvation = -32133.702894 eV Core-core repulsion = 27534.453661 eV Total energy + Delta-G solvation = -4599.249233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.39766 -47.42165 -45.00627 -39.97443 -37.83510 -35.09653 -34.59741 -34.05858 -33.01131 -31.15004 -28.67714 -28.35860 -27.20619 -26.51566 -24.87191 -23.74820 -22.60848 -21.98374 -20.93253 -20.28282 -18.82708 -18.46220 -17.99108 -17.47073 -17.34926 -17.15391 -16.94990 -16.48425 -15.78544 -15.23555 -14.89441 -14.49235 -14.23691 -14.03845 -13.73379 -13.69577 -13.35071 -13.29923 -13.15349 -12.97066 -12.92746 -12.78056 -12.46910 -12.30408 -12.13481 -11.79075 -11.59714 -11.38285 -11.23493 -11.11514 -10.86684 -10.80633 -10.46611 -10.12540 -10.02289 -9.86405 -9.85220 -9.76390 -9.60084 -8.93112 -8.44319 -6.96895 -5.80811 -3.09467 0.90577 1.87713 2.19711 2.56195 3.04578 3.39016 3.44771 3.45437 3.47346 3.69927 3.90289 4.05882 4.31112 4.44327 4.52610 4.56638 4.79956 4.86210 5.01788 5.03361 5.07574 5.22400 5.35006 5.47069 5.50249 5.64851 5.70882 5.74626 5.85764 5.88588 5.92129 5.93842 6.05519 6.19339 6.21168 6.30505 6.37980 6.58550 6.63917 6.82200 7.48444 7.65115 8.05602 8.26039 8.37116 9.49302 10.05308 10.41411 11.41251 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004797 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.900412 B = 5835.684393 C = 7923.279120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 N -0.346 5.346 4 O 0.120 5.880 5 C -0.096 4.096 6 C 0.367 3.633 7 F -0.185 7.185 8 F -0.172 7.172 9 C -0.177 4.177 10 C 0.596 3.404 11 O -0.509 6.509 12 N -0.581 5.581 13 C 0.083 3.917 14 C 0.162 3.838 15 H 0.106 0.894 16 C 0.142 3.858 17 N -0.727 5.727 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.159 4.159 27 C -0.183 4.183 28 C -0.172 4.172 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.822 0.444 -5.495 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 N -0.050 5.050 4 O 0.054 5.946 5 C -0.161 4.161 6 C 0.312 3.688 7 F -0.166 7.166 8 F -0.153 7.153 9 C -0.184 4.184 10 C 0.381 3.619 11 O -0.384 6.384 12 N -0.313 5.313 13 C -0.060 4.060 14 C 0.059 3.941 15 H 0.124 0.876 16 C 0.014 3.986 17 N -0.372 5.372 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.205 4.205 21 N -0.575 5.575 22 Si 0.735 3.265 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.179 4.179 27 C -0.220 4.220 28 C -0.209 4.209 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.393 1.385 -4.996 17.194 hybrid contribution -1.010 -0.442 -0.020 1.103 sum 15.383 0.943 -5.016 16.208 Atomic orbital electron populations 1.20385 0.82703 1.05531 1.04994 1.25188 0.99558 0.85217 0.99118 1.73621 0.88815 1.23092 1.19451 1.84581 1.21908 1.20471 1.67614 1.24955 0.96760 0.86219 1.08133 1.19491 0.79993 0.75021 0.94305 1.93071 1.64644 1.75109 1.83750 1.93151 1.95680 1.42843 1.83660 1.22157 0.91765 0.96462 1.08042 1.16777 0.77383 0.83530 0.84195 1.90854 1.49586 1.66801 1.31148 1.47479 1.68022 1.10508 1.05318 1.21704 1.00697 0.97141 0.86431 1.20923 0.93047 0.78284 1.01829 0.87579 1.21131 0.87067 0.95092 0.95303 1.42295 1.06245 1.49820 1.38814 1.19214 0.86163 1.20018 1.11701 0.91306 1.24683 0.97919 0.99605 0.98290 1.69652 1.33182 1.29938 1.24690 0.86176 0.85269 0.77112 0.77930 1.20716 1.21936 1.21959 1.22554 0.99656 0.95230 1.00445 1.23203 1.03552 1.04196 0.91028 1.22960 1.03413 0.92245 1.02287 0.88960 0.87346 0.90383 0.83807 0.93247 0.89671 0.91738 0.95478 0.95186 0.78061 0.93608 0.87834 0.87478 0.89233 0.88972 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.49 36.01 0.38 -0.98 16 2 C 0.07 1.16 7.38 -79.76 -0.59 0.57 16 3 N -0.35 -5.43 12.01 34.78 0.42 -5.01 16 4 O 0.12 1.68 11.06 18.66 0.21 1.88 16 5 C -0.10 -1.27 7.13 -34.62 -0.25 -1.52 16 6 C 0.37 3.74 5.81 36.01 0.21 3.95 16 7 F -0.18 -2.00 17.32 2.25 0.04 -1.96 16 8 F -0.17 -2.26 16.12 2.25 0.04 -2.22 16 9 C -0.18 -2.83 4.37 -102.89 -0.45 -3.28 16 10 C 0.60 10.67 6.16 -12.53 -0.08 10.59 16 11 O -0.51 -11.03 16.43 5.27 0.09 -10.95 16 12 N -0.58 -9.11 2.24 -175.21 -0.39 -9.50 16 13 C 0.08 1.06 9.63 59.85 0.58 1.64 16 14 C 0.16 2.61 2.59 -67.93 -0.18 2.43 16 15 H 0.11 2.00 6.90 -51.93 -0.36 1.64 16 16 C 0.14 2.64 4.14 -4.04 -0.02 2.62 16 17 N -0.73 -17.36 5.43 -59.90 -0.33 -17.69 16 18 C -0.24 -6.33 9.99 -15.06 -0.15 -6.48 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 22 Si 0.90 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C -0.16 -1.96 5.48 -90.62 -0.50 -2.46 16 27 C -0.18 -1.99 9.59 -26.69 -0.26 -2.25 16 28 C -0.17 -1.91 9.94 -26.69 -0.27 -2.18 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.11 2.21 8.14 -51.93 -0.42 1.79 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 35 H 0.06 0.85 6.71 -51.93 -0.35 0.50 16 36 H 0.03 0.49 5.34 -51.93 -0.28 0.21 16 37 H 0.03 0.57 7.44 -51.93 -0.39 0.19 16 38 H 0.39 9.96 7.06 -40.82 -0.29 9.67 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.11 1.29 5.80 -51.93 -0.30 0.99 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.18 7.66 -51.93 -0.40 0.79 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -31.40 377.47 -5.82 -37.23 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.62 Total: 9.02 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.66 Total: 2.33 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.42 Total: -57.59 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.29 Total: -9.06 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.40 -5.82 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507012357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.874 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds