Wall clock time and date at job start Wed Apr 1 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30018 * 127.33896 * 2 1 4 4 O 1.20651 * 112.30184 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15967 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.83208 * 179.97438 * 5 4 3 7 7 F 1.39900 * 109.46715 * 30.02814 * 6 5 4 8 8 F 1.39897 * 109.47068 * 150.02725 * 6 5 4 9 9 C 1.37362 * 106.34398 * 0.26530 * 5 4 3 10 10 C 1.47394 * 128.56757 * 179.69636 * 9 5 4 11 11 O 1.21614 * 119.99478 * 90.00002 * 10 9 5 12 12 N 1.34777 * 120.00214 * 269.99917 * 10 9 5 13 13 C 1.46503 * 119.99631 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99659 * 180.02562 * 12 10 9 15 15 H 1.08997 * 109.47770 * 0.02562 * 14 12 10 16 16 C 1.53004 * 109.46789 * 120.00154 * 14 12 10 17 17 N 1.46497 * 109.47178 * 304.99562 * 16 14 12 18 18 C 1.36935 * 119.99835 * 179.97438 * 17 16 14 19 19 H 1.08007 * 120.00610 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00157 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99382 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46823 * 120.00550 * 22 20 18 25 25 H 1.48497 * 109.47057 * 240.00483 * 22 20 18 26 26 C 1.53005 * 109.46988 * 239.99781 * 14 12 10 27 27 C 1.53001 * 117.49748 * 248.75222 * 26 14 12 28 28 C 1.53002 * 117.49803 * 180.09256 * 26 14 12 29 29 H 1.09004 * 109.46677 * 90.02448 * 1 2 3 30 30 H 1.08994 * 109.47312 * 210.02394 * 1 2 3 31 31 H 1.08995 * 109.46826 * 330.02869 * 1 2 3 32 32 H 1.09000 * 109.47161 * 270.02970 * 6 5 4 33 33 H 1.09003 * 109.46915 * 90.00366 * 13 12 10 34 34 H 1.09001 * 109.46692 * 209.99827 * 13 12 10 35 35 H 1.09000 * 109.47297 * 330.00054 * 13 12 10 36 36 H 1.09007 * 109.47015 * 64.99995 * 16 14 12 37 37 H 1.09001 * 109.46920 * 184.99467 * 16 14 12 38 38 H 0.96999 * 120.00219 * 0.02562 * 17 16 14 39 39 H 0.97007 * 119.99367 * 179.97438 * 21 20 18 40 40 H 1.09001 * 115.54656 * 34.42396 * 26 14 12 41 41 H 1.09001 * 117.49985 * 359.97438 * 27 26 14 42 42 H 1.08999 * 117.49429 * 145.02725 * 27 26 14 43 43 H 1.09004 * 117.49508 * 214.98377 * 28 26 14 44 44 H 1.09002 * 117.49893 * 359.97334 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0015 6 6 4.9712 -1.3248 0.0018 7 9 5.9288 -0.5466 0.6610 8 9 4.8315 -2.5504 0.6617 9 6 2.3991 -1.1697 -0.0045 10 6 2.0401 -2.5992 -0.0123 11 8 1.8892 -3.1939 1.0377 12 7 1.8790 -3.2473 -1.1830 13 6 2.0613 -2.5309 -2.4479 14 6 1.5215 -4.6679 -1.1906 15 1 1.4295 -5.0250 -0.1649 16 6 0.1876 -4.8543 -1.9165 17 7 -0.8287 -3.9996 -1.2978 18 6 -2.1092 -3.9976 -1.7828 19 1 -2.3702 -4.6264 -2.6213 20 6 -3.0724 -3.1881 -1.1962 21 7 -2.7545 -2.4222 -0.1741 22 14 -4.8195 -3.1859 -1.8575 23 1 -4.9169 -4.1276 -3.0016 24 1 -5.7549 -3.6115 -0.7855 25 1 -5.1755 -1.8173 -2.3105 26 6 2.6106 -5.4640 -1.9126 27 6 2.2521 -6.0875 -3.2630 28 6 2.4197 -6.9776 -2.0288 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 5.2899 -1.4996 -1.0258 33 1 3.1031 -2.6040 -2.7599 34 1 1.4214 -2.9732 -3.2114 35 1 1.7950 -1.4825 -2.3133 36 1 0.3033 -4.5804 -2.9653 37 1 -0.1222 -5.8969 -1.8454 38 1 -0.5943 -3.4346 -0.5450 39 1 -3.4275 -1.8563 0.2355 40 1 3.6275 -5.0934 -1.7833 41 1 1.2402 -5.9310 -3.6368 42 1 3.0333 -6.1277 -4.0220 43 1 3.3111 -7.6028 -1.9765 44 1 1.5184 -7.4063 -1.5906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507012357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:39 Heat of formation + Delta-G solvation = -37.394699 kcal Electronic energy + Delta-G solvation = -32134.528569 eV Core-core repulsion = 27534.453661 eV Total energy + Delta-G solvation = -4600.074909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.26458 -48.29714 -46.23234 -41.28234 -39.04311 -36.42435 -36.00382 -35.62461 -34.19126 -32.98628 -30.09559 -29.74366 -28.23838 -27.71539 -26.42000 -25.14447 -23.98786 -23.06387 -22.09060 -21.43170 -20.13582 -19.54248 -19.14870 -19.02394 -18.36247 -18.33836 -18.13107 -17.76771 -17.03722 -16.63286 -16.25657 -15.96726 -15.36594 -15.09589 -15.04229 -14.91676 -14.64861 -14.58827 -14.55715 -14.42105 -14.19762 -13.94167 -13.82094 -13.65782 -13.27498 -13.02913 -12.93458 -12.74239 -12.72163 -12.55944 -12.32327 -12.18298 -11.95711 -11.74143 -11.59518 -11.15757 -11.08707 -10.97940 -10.93710 -10.76193 -9.71025 -8.94564 -7.88248 -5.17360 -0.21725 0.58996 1.08623 1.28755 1.47423 1.49393 1.57569 1.82876 2.50271 2.57188 2.79431 2.87610 2.97449 3.26957 3.41568 3.44460 3.60595 3.70571 3.80570 3.90628 3.95622 4.12778 4.15245 4.23804 4.29529 4.33867 4.43930 4.52911 4.56650 4.61695 4.74075 4.83885 4.88522 4.96730 5.10136 5.13471 5.15286 5.26217 5.38255 5.51399 5.55840 6.21467 6.31088 6.86847 6.93697 7.38441 8.11505 8.36235 9.33494 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004797 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.900412 B = 5835.684393 C = 7923.279120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.055 3.945 3 N -0.350 5.350 4 O 0.134 5.866 5 C -0.070 4.070 6 C 0.366 3.634 7 F -0.186 7.186 8 F -0.190 7.190 9 C -0.201 4.201 10 C 0.596 3.404 11 O -0.562 6.562 12 N -0.575 5.575 13 C 0.078 3.922 14 C 0.169 3.831 15 H 0.070 0.930 16 C 0.144 3.856 17 N -0.740 5.740 18 C -0.242 4.242 19 H 0.074 0.926 20 C -0.064 4.064 21 N -0.954 5.954 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.301 1.301 25 H -0.294 1.294 26 C -0.163 4.163 27 C -0.166 4.166 28 C -0.171 4.171 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.209 0.791 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.028 0.972 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.216 0.152 -7.969 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 N -0.052 5.052 4 O 0.067 5.933 5 C -0.135 4.135 6 C 0.312 3.688 7 F -0.167 7.167 8 F -0.171 7.171 9 C -0.208 4.208 10 C 0.382 3.618 11 O -0.440 6.440 12 N -0.305 5.305 13 C -0.063 4.063 14 C 0.065 3.935 15 H 0.088 0.912 16 C 0.017 3.983 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.092 0.908 20 C -0.257 4.257 21 N -0.604 5.604 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.229 1.229 25 H -0.221 1.221 26 C -0.182 4.182 27 C -0.203 4.203 28 C -0.209 4.209 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.225 0.775 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.204 0.796 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.794 1.074 -7.541 20.279 hybrid contribution -1.701 -0.380 0.740 1.893 sum 17.093 0.695 -6.800 18.409 Atomic orbital electron populations 1.20098 0.83843 1.04163 1.04186 1.25019 0.99195 0.85967 1.00413 1.73600 0.89262 1.22862 1.19482 1.84568 1.21056 1.20914 1.66743 1.25544 0.97457 0.85462 1.05072 1.20265 0.78139 0.73608 0.96776 1.93073 1.64290 1.75179 1.84166 1.93127 1.95648 1.43909 1.84383 1.21953 0.92897 0.95380 1.10610 1.17006 0.76751 0.84077 0.83992 1.90817 1.52172 1.68062 1.32987 1.47562 1.66643 1.10426 1.05889 1.21942 1.03472 0.96294 0.84634 1.20717 0.93386 0.79274 1.00081 0.91179 1.21285 0.87165 0.93837 0.96000 1.42488 1.06754 1.50376 1.38669 1.19549 0.87268 1.19241 1.11336 0.90761 1.25395 1.01301 1.00023 0.98982 1.69816 1.33801 1.30819 1.25975 0.85218 0.81013 0.76997 0.77320 1.19311 1.22896 1.22103 1.22401 0.98841 0.95487 1.01516 1.23227 1.03680 1.02520 0.90858 1.23050 1.03817 0.91718 1.02299 0.89553 0.91144 0.89197 0.77531 0.88645 0.90086 0.92381 0.93675 0.95431 0.79619 0.94265 0.85994 0.88868 0.86318 0.86629 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 10.49 71.24 0.75 -1.63 16 2 C 0.05 1.83 7.38 45.16 0.33 2.16 16 3 N -0.35 -10.72 12.01 -44.77 -0.54 -11.26 16 4 O 0.13 3.51 11.06 77.01 0.85 4.36 16 5 C -0.07 -1.72 7.13 25.48 0.18 -1.53 16 6 C 0.37 6.23 5.81 71.24 0.41 6.64 16 7 F -0.19 -3.45 17.32 44.97 0.78 -2.67 16 8 F -0.19 -4.59 16.12 44.97 0.72 -3.86 16 9 C -0.20 -6.40 4.37 -18.74 -0.08 -6.48 16 10 C 0.60 21.73 6.16 86.65 0.53 22.27 16 11 O -0.56 -25.64 16.43 -4.08 -0.07 -25.71 16 12 N -0.58 -17.79 2.24 -826.49 -1.85 -19.64 16 13 C 0.08 1.83 9.63 127.77 1.23 3.06 16 14 C 0.17 5.43 2.59 45.00 0.12 5.55 16 15 H 0.07 2.78 6.90 -2.39 -0.02 2.77 16 16 C 0.14 5.36 4.14 86.38 0.36 5.71 16 17 N -0.74 -36.31 5.43 -343.44 -1.87 -38.18 16 18 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 19 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 20 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 21 N -0.95 -55.85 13.06 21.65 0.28 -55.57 16 22 Si 0.96 45.08 29.55 68.60 2.03 47.10 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 C -0.16 -3.64 5.48 -10.79 -0.06 -3.70 16 27 C -0.17 -3.07 9.59 30.62 0.29 -2.77 16 28 C -0.17 -3.44 9.94 30.62 0.30 -3.13 16 29 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 30 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.21 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.97 6.53 -2.39 -0.02 1.95 16 35 H 0.06 1.45 6.71 -2.39 -0.02 1.43 16 36 H 0.05 1.55 5.34 -2.38 -0.01 1.54 16 37 H 0.03 1.06 7.44 -2.39 -0.02 1.04 16 38 H 0.37 20.18 7.06 -92.71 -0.65 19.52 16 39 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.09 2.01 5.80 -2.39 -0.01 2.00 16 42 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.08 1.93 7.66 -2.39 -0.02 1.92 16 Total: -1.00 -72.12 377.47 6.42 -65.70 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.41 Total: 28.77 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.68 Total: 10.97 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -3.98 Total: -124.65 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.78 Total: -21.35 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.50 Total: -6.54 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.12 6.42 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507012357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.306 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds