Wall clock time and date at job start Wed Apr 1 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00099 * 2 1 4 4 C 1.52997 * 109.47294 * 89.99713 * 3 2 1 5 5 H 1.09001 * 109.46832 * 60.00150 * 4 3 2 6 6 O 1.42895 * 109.47503 * 299.99916 * 4 3 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 8 8 N 1.46895 * 109.47221 * 185.00300 * 7 4 3 9 9 C 1.46896 * 111.00108 * 180.02562 * 8 7 4 10 10 C 1.50700 * 109.47209 * 179.97438 * 9 8 7 11 11 N 1.30834 * 125.96105 * 269.68799 * 10 9 8 12 12 C 1.33243 * 109.82896 * 179.86659 * 11 10 9 13 13 N 1.30711 * 108.94598 * 0.40408 * 12 11 10 14 14 N 1.34421 * 125.96228 * 89.99992 * 10 9 8 15 15 C 1.46502 * 126.82160 * 0.02562 * 14 10 9 16 16 C 1.34779 * 119.99671 * 179.97438 * 2 1 3 17 17 O 1.21289 * 119.99834 * 180.02562 * 16 2 1 18 18 C 1.50696 * 120.00404 * 359.97438 * 16 2 1 19 19 S 1.80998 * 109.47275 * 180.02562 * 18 16 2 20 20 C 1.76204 * 100.00116 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99560 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00259 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99624 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00224 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47198 * 59.99568 * 24 22 20 26 26 H 1.48497 * 109.47292 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47083 * 299.99656 * 24 22 20 28 28 H 1.09003 * 109.46953 * 90.00231 * 1 2 3 29 29 H 1.09003 * 109.47246 * 210.00399 * 1 2 3 30 30 H 1.08997 * 109.47278 * 330.00222 * 1 2 3 31 31 H 1.09001 * 109.47054 * 329.99445 * 3 2 1 32 32 H 1.09004 * 109.47074 * 209.99959 * 3 2 1 33 33 H 0.96696 * 113.99976 * 300.00825 * 6 4 3 34 34 H 1.08997 * 109.47395 * 305.00572 * 7 4 3 35 35 H 1.09004 * 109.46579 * 64.99848 * 7 4 3 36 36 H 1.00910 * 110.99920 * 303.95616 * 8 7 4 37 37 H 1.09001 * 109.47414 * 300.00100 * 9 8 7 38 38 H 1.09003 * 109.46964 * 59.99930 * 9 8 7 39 39 H 1.07997 * 125.52469 * 180.13102 * 12 11 10 40 40 H 1.08999 * 109.47273 * 89.99976 * 15 14 10 41 41 H 1.09000 * 109.46996 * 209.99715 * 15 14 10 42 42 H 1.09000 * 109.47089 * 329.99675 * 15 14 10 43 43 H 1.08999 * 109.47009 * 299.99913 * 18 16 2 44 44 H 1.09000 * 109.46926 * 59.99842 * 18 16 2 45 45 H 0.97002 * 119.99643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8814 2.1161 7 6 3.2181 3.0352 1.4424 8 7 3.5675 3.3989 2.8221 9 6 4.3047 4.6688 2.8611 10 6 4.6445 5.0087 4.2894 11 7 3.9067 5.7144 5.1077 12 6 4.5125 5.8145 6.2902 13 7 5.6531 5.1784 6.2379 14 7 5.7612 4.6448 4.9433 15 6 6.8709 3.8503 4.4108 16 6 2.1389 -1.1673 0.0005 17 8 3.3517 -1.1673 0.0010 18 6 1.3854 -2.4723 0.0017 19 16 2.5615 -3.8481 0.0029 20 6 1.4414 -5.2083 0.0034 21 1 0.3763 -5.0305 0.0033 22 6 1.9281 -6.5081 0.0048 23 7 3.2266 -6.7247 0.0054 24 14 0.7407 -7.9501 0.0046 25 1 -0.1131 -7.8880 -1.2088 26 1 1.5067 -9.2222 0.0057 27 1 -0.1157 -7.8863 1.2161 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6085 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6268 2.5440 1.7125 34 1 4.1288 2.9285 0.8531 35 1 2.5935 3.8157 1.0079 36 1 2.7445 3.4407 3.4045 37 1 5.2229 4.5740 2.2815 38 1 3.6873 5.4605 2.4366 39 1 4.1259 6.3401 7.1508 40 1 7.6111 4.5139 3.9637 41 1 7.3325 3.2833 5.2192 42 1 6.4948 3.1626 3.6533 43 1 0.7591 -2.5295 0.8920 44 1 0.7584 -2.5306 -0.8880 45 1 3.5667 -7.6331 0.0061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507466658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:30 Heat of formation + Delta-G solvation = 14.030922 kcal Electronic energy + Delta-G solvation = -26791.479850 eV Core-core repulsion = 22779.768062 eV Total energy + Delta-G solvation = -4011.711789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42210 -39.77721 -38.14608 -36.06944 -34.90250 -34.31563 -32.42357 -32.20537 -30.92959 -29.10271 -27.88071 -27.08243 -25.99242 -25.45853 -23.98827 -22.34601 -22.04513 -20.75224 -19.35234 -17.71884 -17.69176 -16.93275 -16.67991 -16.49303 -16.26877 -15.78930 -15.68745 -15.07273 -14.84945 -14.79631 -14.70690 -14.62902 -13.94713 -13.66604 -13.48178 -13.37712 -13.07064 -12.89768 -12.72527 -12.60202 -12.55008 -12.34478 -11.99131 -11.94705 -11.76808 -11.28530 -11.04141 -11.03591 -10.76458 -10.57293 -10.37403 -10.08093 -9.95122 -9.81341 -9.38990 -9.05430 -9.00768 -8.48743 -8.23089 -6.49675 -6.21176 -3.91725 1.21405 1.97618 2.55481 2.88453 3.03116 3.23794 3.25508 3.29220 3.48975 3.61980 3.90683 4.13824 4.15111 4.20943 4.34859 4.55471 4.71591 4.75580 4.77232 4.83206 4.87258 4.93894 5.11145 5.12717 5.13640 5.14893 5.19847 5.24834 5.43491 5.54484 5.65552 5.73305 5.88070 5.91625 5.93278 6.10024 6.14821 6.28815 6.43942 6.58874 6.82444 7.37175 7.49976 7.59823 7.75198 8.35463 8.53003 9.24021 10.86195 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.001889 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.261481 B =14822.961208 C =15665.996764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.616 5.616 3 C 0.090 3.910 4 C 0.091 3.909 5 H 0.115 0.885 6 O -0.551 6.551 7 C 0.033 3.967 8 N -0.680 5.680 9 C 0.137 3.863 10 C 0.281 3.719 11 N -0.543 5.543 12 C 0.198 3.802 13 N -0.321 5.321 14 N -0.365 5.365 15 C 0.092 3.908 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.365 0.635 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.358 0.642 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.218 0.782 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 26.939 3.363 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.352 5.352 3 C -0.035 4.035 4 C 0.030 3.970 5 H 0.133 0.867 6 O -0.356 6.356 7 C -0.097 4.097 8 N -0.314 5.314 9 C 0.005 3.995 10 C 0.004 3.996 11 N -0.272 5.272 12 C -0.105 4.105 13 N -0.149 5.149 14 N -0.156 5.156 15 C -0.050 4.050 16 C 0.322 3.678 17 O -0.392 6.392 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.212 0.788 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.178 0.822 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.165 25.983 4.245 26.417 hybrid contribution -3.034 0.083 -0.598 3.094 sum -0.869 26.067 3.646 26.335 Atomic orbital electron populations 1.21761 0.79401 1.03515 1.01183 1.47670 1.06898 1.05087 1.75528 1.21970 0.99074 0.86025 0.96419 1.22505 0.84710 0.96199 0.93547 0.86683 1.86725 1.29010 1.63262 1.56557 1.22634 1.00729 0.96907 0.89444 1.60362 1.30127 1.29886 1.11020 1.20346 1.00433 0.92287 0.86410 1.24083 0.84899 0.93932 0.96706 1.70457 1.31920 1.22438 1.02335 1.25943 0.89711 0.98177 0.96665 1.78072 1.21805 1.17774 0.97236 1.50201 1.17011 1.39726 1.08652 1.22062 0.87114 0.95064 1.00734 1.20365 0.87925 0.84624 0.74891 1.90688 1.13708 1.86830 1.47948 1.23546 1.04557 0.97182 1.04726 1.85361 1.08093 0.93350 1.96711 1.22817 0.94281 0.92218 1.59013 0.90995 1.24991 0.95684 0.98369 0.94546 1.70013 1.11735 1.21743 1.46815 0.86224 0.80191 0.80289 0.78802 1.19953 1.20820 1.19922 0.93079 0.90688 0.91178 0.90624 0.88772 0.78829 0.89358 0.94279 0.82184 0.88605 0.91191 0.76608 0.90234 0.88754 0.87997 0.89185 0.89332 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.98 59.85 0.60 1.44 16 2 N -0.62 -8.07 2.80 -181.57 -0.51 -8.58 16 3 C 0.09 0.88 5.10 -4.05 -0.02 0.86 16 4 C 0.09 0.85 3.47 -26.73 -0.09 0.76 16 5 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -5.02 11.58 -35.23 -0.41 -5.42 16 7 C 0.03 0.21 5.36 -3.82 -0.02 0.19 16 8 N -0.68 -5.27 6.49 -115.06 -0.75 -6.01 16 9 C 0.14 0.90 5.80 -4.98 -0.03 0.87 16 10 C 0.28 2.67 7.49 -155.70 -1.17 1.50 16 11 N -0.54 -5.90 11.19 -11.97 -0.13 -6.04 16 12 C 0.20 1.98 13.03 -91.81 -1.20 0.78 16 13 N -0.32 -3.61 12.70 29.29 0.37 -3.24 16 14 N -0.37 -3.54 4.04 -65.10 -0.26 -3.80 16 15 C 0.09 0.57 11.16 59.85 0.67 1.24 16 16 C 0.53 9.87 7.69 -10.99 -0.08 9.79 16 17 O -0.52 -11.34 15.44 5.55 0.09 -11.26 16 18 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.07 0.52 6.88 -51.93 -0.36 0.16 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 33 H 0.37 1.82 8.79 45.56 0.40 2.22 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.36 3.19 8.28 -39.29 -0.33 2.87 16 37 H 0.10 0.46 7.76 -51.93 -0.40 0.05 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.55 7.72 -51.93 -0.40 0.15 16 43 H 0.09 1.73 7.40 -51.92 -0.38 1.34 16 44 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -38.37 395.74 -9.07 -47.45 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.96 Total: 2.25 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.98 Total: 1.61 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.55 Total: -53.08 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.32 Total: -16.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.37 -9.07 -47.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507466658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.477 kcal (2) G-P(sol) polarization free energy of solvation -38.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds