Wall clock time and date at job start Wed Apr 1 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00099 * 2 1 4 4 C 1.52997 * 109.47294 * 89.99713 * 3 2 1 5 5 H 1.09001 * 109.46832 * 60.00150 * 4 3 2 6 6 O 1.42895 * 109.47503 * 299.99916 * 4 3 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 8 8 N 1.46895 * 109.47221 * 185.00300 * 7 4 3 9 9 C 1.46896 * 111.00108 * 180.02562 * 8 7 4 10 10 C 1.50700 * 109.47209 * 179.97438 * 9 8 7 11 11 N 1.30834 * 125.96105 * 269.68799 * 10 9 8 12 12 C 1.33243 * 109.82896 * 179.86659 * 11 10 9 13 13 N 1.30711 * 108.94598 * 0.40408 * 12 11 10 14 14 N 1.34421 * 125.96228 * 89.99992 * 10 9 8 15 15 C 1.46502 * 126.82160 * 0.02562 * 14 10 9 16 16 C 1.34779 * 119.99671 * 179.97438 * 2 1 3 17 17 O 1.21289 * 119.99834 * 180.02562 * 16 2 1 18 18 C 1.50696 * 120.00404 * 359.97438 * 16 2 1 19 19 S 1.80998 * 109.47275 * 180.02562 * 18 16 2 20 20 C 1.76204 * 100.00116 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99560 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00259 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99624 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00224 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47198 * 59.99568 * 24 22 20 26 26 H 1.48497 * 109.47292 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47083 * 299.99656 * 24 22 20 28 28 H 1.09003 * 109.46953 * 90.00231 * 1 2 3 29 29 H 1.09003 * 109.47246 * 210.00399 * 1 2 3 30 30 H 1.08997 * 109.47278 * 330.00222 * 1 2 3 31 31 H 1.09001 * 109.47054 * 329.99445 * 3 2 1 32 32 H 1.09004 * 109.47074 * 209.99959 * 3 2 1 33 33 H 0.96696 * 113.99976 * 300.00825 * 6 4 3 34 34 H 1.08997 * 109.47395 * 305.00572 * 7 4 3 35 35 H 1.09004 * 109.46579 * 64.99848 * 7 4 3 36 36 H 1.00910 * 110.99920 * 303.95616 * 8 7 4 37 37 H 1.09001 * 109.47414 * 300.00100 * 9 8 7 38 38 H 1.09003 * 109.46964 * 59.99930 * 9 8 7 39 39 H 1.07997 * 125.52469 * 180.13102 * 12 11 10 40 40 H 1.08999 * 109.47273 * 89.99976 * 15 14 10 41 41 H 1.09000 * 109.46996 * 209.99715 * 15 14 10 42 42 H 1.09000 * 109.47089 * 329.99675 * 15 14 10 43 43 H 1.08999 * 109.47009 * 299.99913 * 18 16 2 44 44 H 1.09000 * 109.46926 * 59.99842 * 18 16 2 45 45 H 0.97002 * 119.99643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8814 2.1161 7 6 3.2181 3.0352 1.4424 8 7 3.5675 3.3989 2.8221 9 6 4.3047 4.6688 2.8611 10 6 4.6445 5.0087 4.2894 11 7 3.9067 5.7144 5.1077 12 6 4.5125 5.8145 6.2902 13 7 5.6531 5.1784 6.2379 14 7 5.7612 4.6448 4.9433 15 6 6.8709 3.8503 4.4108 16 6 2.1389 -1.1673 0.0005 17 8 3.3517 -1.1673 0.0010 18 6 1.3854 -2.4723 0.0017 19 16 2.5615 -3.8481 0.0029 20 6 1.4414 -5.2083 0.0034 21 1 0.3763 -5.0305 0.0033 22 6 1.9281 -6.5081 0.0048 23 7 3.2266 -6.7247 0.0054 24 14 0.7407 -7.9501 0.0046 25 1 -0.1131 -7.8880 -1.2088 26 1 1.5067 -9.2222 0.0057 27 1 -0.1157 -7.8863 1.2161 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6085 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6268 2.5440 1.7125 34 1 4.1288 2.9285 0.8531 35 1 2.5935 3.8157 1.0079 36 1 2.7445 3.4407 3.4045 37 1 5.2229 4.5740 2.2815 38 1 3.6873 5.4605 2.4366 39 1 4.1259 6.3401 7.1508 40 1 7.6111 4.5139 3.9637 41 1 7.3325 3.2833 5.2192 42 1 6.4948 3.1626 3.6533 43 1 0.7591 -2.5295 0.8920 44 1 0.7584 -2.5306 -0.8880 45 1 3.5667 -7.6331 0.0061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507466658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:30 Heat of formation + Delta-G solvation = -16.640897 kcal Electronic energy + Delta-G solvation = -26792.809880 eV Core-core repulsion = 22779.768062 eV Total energy + Delta-G solvation = -4013.041819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.11481 -40.95598 -39.00983 -36.80889 -35.94938 -34.95649 -34.58484 -32.91454 -31.93060 -30.28007 -28.58677 -27.81564 -27.68593 -26.77735 -24.77889 -23.04294 -22.72829 -21.40903 -20.70938 -19.54658 -18.35298 -18.09445 -17.59140 -17.24322 -17.10147 -16.88287 -16.70912 -16.69901 -15.94736 -15.73213 -15.58535 -15.41488 -15.23681 -14.60889 -14.53745 -14.24276 -14.04682 -13.98041 -13.70829 -13.51759 -13.34122 -13.22730 -13.16401 -12.99721 -12.86896 -12.69162 -12.58979 -12.50193 -12.04734 -11.73176 -11.34027 -11.12960 -11.12196 -10.84880 -10.79560 -10.62630 -10.27444 -9.57692 -9.47852 -8.66972 -8.34612 -6.12823 0.52426 1.26433 1.38069 1.43693 1.46125 1.55738 1.59932 1.84811 2.15571 2.28101 2.92489 2.99195 3.26245 3.30800 3.53490 3.56117 3.74645 3.79797 3.94175 4.11270 4.16652 4.23095 4.26872 4.35036 4.38048 4.40748 4.46971 4.49823 4.60700 4.66433 4.68329 4.77727 4.84356 4.99432 5.12756 5.24513 5.41108 5.42318 5.59171 5.74546 5.88054 6.19286 6.21130 6.28801 6.92495 7.04272 7.06335 7.17798 8.74345 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.001889 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.261481 B =14822.961208 C =15665.996764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.087 3.913 4 C 0.103 3.897 5 H 0.065 0.935 6 O -0.566 6.566 7 C 0.043 3.957 8 N -0.694 5.694 9 C 0.142 3.858 10 C 0.276 3.724 11 N -0.567 5.567 12 C 0.191 3.809 13 N -0.354 5.354 14 N -0.373 5.373 15 C 0.087 3.913 16 C 0.528 3.472 17 O -0.564 6.564 18 C -0.124 4.124 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.387 0.613 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.350 0.650 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.244 0.756 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 28.582 2.438 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C -0.036 4.036 4 C 0.042 3.958 5 H 0.083 0.917 6 O -0.373 6.373 7 C -0.087 4.087 8 N -0.327 5.327 9 C 0.011 3.989 10 C -0.001 4.001 11 N -0.296 5.296 12 C -0.111 4.111 13 N -0.183 5.183 14 N -0.163 5.163 15 C -0.054 4.054 16 C 0.316 3.684 17 O -0.443 6.443 18 C -0.275 4.275 19 S 0.076 5.924 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.260 0.740 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.299 27.682 3.303 27.880 hybrid contribution -2.343 -0.276 -0.298 2.378 sum -2.642 27.406 3.005 27.697 Atomic orbital electron populations 1.22067 0.76992 1.04716 1.02865 1.47673 1.08410 1.04496 1.72966 1.22254 0.99035 0.85226 0.97134 1.22138 0.84892 0.96486 0.92254 0.91690 1.86689 1.29190 1.64379 1.57046 1.22535 1.01158 0.95943 0.89044 1.60319 1.30016 1.30764 1.11648 1.20471 1.01389 0.92088 0.84932 1.24634 0.84578 0.93258 0.97605 1.70461 1.32753 1.23493 1.02900 1.26551 0.89357 0.97816 0.97367 1.78001 1.22789 1.18915 0.98547 1.50433 1.17793 1.39778 1.08295 1.22285 0.86875 0.95435 1.00825 1.20100 0.87309 0.85612 0.75401 1.90669 1.15455 1.87511 1.50633 1.23369 1.02736 0.95426 1.05992 1.85515 1.12654 0.97258 1.97013 1.23160 0.94609 0.92725 1.58992 0.90036 1.26138 0.97637 1.01685 0.93731 1.70182 1.14084 1.22518 1.47917 0.85006 0.77616 0.75884 0.79512 1.18532 1.20342 1.18755 0.91058 0.91809 0.87790 0.85780 0.90350 0.76371 0.88855 0.91007 0.83064 0.86652 0.89814 0.74030 0.88127 0.89006 0.87236 0.88095 0.87606 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.98 127.77 1.28 2.51 16 2 N -0.60 -14.64 2.80 -846.75 -2.37 -17.01 16 3 C 0.09 1.49 5.10 86.38 0.44 1.93 16 4 C 0.10 1.77 3.47 30.60 0.11 1.88 16 5 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 6 O -0.57 -8.84 11.58 -148.98 -1.73 -10.57 16 7 C 0.04 0.45 5.36 86.31 0.46 0.91 16 8 N -0.69 -9.63 6.49 -517.94 -3.36 -12.99 16 9 C 0.14 1.58 5.80 85.56 0.50 2.07 16 10 C 0.28 4.99 7.49 138.23 1.04 6.02 16 11 N -0.57 -11.94 11.19 -191.78 -2.15 -14.09 16 12 C 0.19 3.78 13.03 180.76 2.36 6.13 16 13 N -0.35 -7.97 12.70 -61.25 -0.78 -8.75 16 14 N -0.37 -7.05 4.04 -359.87 -1.45 -8.51 16 15 C 0.09 1.02 11.16 127.77 1.43 2.44 16 16 C 0.53 19.60 7.69 87.66 0.67 20.27 16 17 O -0.56 -25.68 15.44 -3.06 -0.05 -25.73 16 18 C -0.12 -5.04 4.71 71.23 0.34 -4.71 16 19 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 20 C -0.55 -31.55 9.50 67.95 0.65 -30.90 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.74 5.49 84.86 0.47 1.20 16 23 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.22 6.44 -2.39 -0.02 1.21 16 30 H 0.10 1.04 6.88 -2.39 -0.02 1.02 16 31 H 0.12 0.98 8.07 -2.39 -0.02 0.97 16 32 H 0.08 1.67 7.42 -2.38 -0.02 1.65 16 33 H 0.39 2.22 8.79 -74.06 -0.65 1.57 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.35 5.79 8.28 -89.69 -0.74 5.04 16 37 H 0.12 0.81 7.76 -2.39 -0.02 0.79 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.24 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.11 1.10 7.72 -2.39 -0.02 1.08 16 43 H 0.10 3.84 7.40 -2.40 -0.02 3.82 16 44 H 0.11 3.88 8.11 -2.39 -0.02 3.86 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -88.46 395.74 -1.38 -89.84 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.37 Total: 17.88 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 9.72 Total: 9.76 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -9.82 Total: -117.31 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.77 Total: -36.29 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -88.46 -1.38 -89.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507466658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.198 kcal (2) G-P(sol) polarization free energy of solvation -88.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds