Wall clock time and date at job start Wed Apr 1 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30830 * 125.96240 * 2 1 4 4 C 1.33241 * 109.83247 * 180.12218 * 3 2 1 5 5 C 1.50699 * 125.52955 * 179.85240 * 4 3 2 6 6 H 1.09000 * 109.47247 * 344.71776 * 5 4 3 7 7 C 1.53006 * 109.46866 * 104.71607 * 5 4 3 8 8 N 1.46899 * 109.47244 * 224.71575 * 5 4 3 9 9 C 1.46897 * 111.00133 * 155.00305 * 8 5 4 10 10 C 1.52997 * 109.47029 * 180.02562 * 9 8 5 11 11 H 1.09002 * 109.47240 * 59.99963 * 10 9 8 12 12 O 1.42894 * 109.47255 * 299.99433 * 10 9 8 13 13 C 1.53007 * 109.47048 * 179.97438 * 10 9 8 14 14 N 1.46500 * 109.46947 * 185.00000 * 13 10 9 15 15 C 1.34777 * 119.99790 * 179.97438 * 14 13 10 16 16 O 1.21286 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00132 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47233 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00149 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99771 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00300 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00264 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47204 * 89.99785 * 23 21 19 25 25 H 1.48499 * 109.47068 * 209.99989 * 23 21 19 26 26 H 1.48502 * 109.47093 * 329.99571 * 23 21 19 27 27 N 1.30715 * 108.94398 * 359.58831 * 4 3 2 28 28 N 1.34430 * 125.96157 * 179.66167 * 2 1 3 29 29 H 0.96995 * 126.82015 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47113 * 270.31289 * 1 2 3 31 31 H 1.09009 * 109.46849 * 30.30656 * 1 2 3 32 32 H 1.08999 * 109.47196 * 150.30586 * 1 2 3 33 33 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 35 35 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 36 36 H 1.00901 * 110.99931 * 31.04632 * 8 5 4 37 37 H 1.09003 * 109.46826 * 299.99875 * 9 8 5 38 38 H 1.08993 * 109.47326 * 59.99934 * 9 8 5 39 39 H 0.96693 * 114.00360 * 300.00318 * 12 10 9 40 40 H 1.09008 * 109.47114 * 304.99924 * 13 10 9 41 41 H 1.08992 * 109.47043 * 64.99755 * 13 10 9 42 42 H 0.96998 * 120.00666 * 0.02562 * 14 13 10 43 43 H 1.09000 * 109.46649 * 300.00007 * 17 15 14 44 44 H 1.09001 * 109.47376 * 60.00197 * 17 15 14 45 45 H 0.97001 * 120.00431 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0067 6 1 4.4066 2.6262 -0.2780 7 6 5.3679 1.6542 1.3870 8 7 5.7294 1.1543 -0.9830 9 6 6.5683 2.2636 -1.4559 10 6 7.5865 1.7370 -2.4692 11 1 7.0613 1.2926 -3.3146 12 8 8.4101 0.7487 -1.8472 13 6 8.4598 2.8925 -2.9623 14 7 9.3541 2.4125 -4.0187 15 6 10.2198 3.2620 -4.6063 16 8 10.2587 4.4238 -4.2602 17 6 11.1393 2.7684 -5.6934 18 16 12.1725 4.1354 -6.2766 19 6 13.1206 3.3001 -7.5046 20 1 12.9580 2.2485 -7.6897 21 6 14.0770 3.9932 -8.2335 22 7 14.2755 5.2747 -8.0077 23 14 15.0816 3.1079 -9.5359 24 1 14.3825 3.1934 -10.8433 25 1 16.4187 3.7442 -9.6471 26 1 15.2422 1.6821 -9.1528 27 7 3.6194 -0.6168 0.0045 28 7 2.2964 -1.0881 0.0064 29 1 2.0093 -2.0145 0.0115 30 1 -0.3633 0.0056 1.0277 31 1 -0.3633 0.8873 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 6.2231 2.3301 1.3840 34 1 4.6317 2.0024 2.1113 35 1 5.6986 0.6516 1.6583 36 1 5.2821 0.6842 -1.7557 37 1 5.9401 3.0173 -1.9308 38 1 7.0931 2.7083 -0.6105 39 1 8.9083 1.0747 -1.0852 40 1 7.8244 3.6856 -3.3567 41 1 9.0518 3.2799 -2.1332 42 1 9.3227 1.4834 -4.2958 43 1 11.7750 1.9755 -5.2993 44 1 10.5469 2.3810 -6.5224 45 1 14.9442 5.7591 -8.5167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568548676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:03 Heat of formation + Delta-G solvation = -6.970037 kcal Electronic energy + Delta-G solvation = -26003.104876 eV Core-core repulsion = 21990.482417 eV Total energy + Delta-G solvation = -4012.622459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67029 -39.42719 -38.27652 -36.63029 -34.05087 -33.38085 -32.88063 -32.40744 -31.34458 -29.96476 -28.49858 -28.25299 -25.58249 -25.22481 -23.70796 -22.04839 -21.52565 -20.36942 -20.23736 -18.44804 -17.89331 -17.18563 -16.68159 -16.35244 -16.28414 -15.81817 -15.29071 -15.08795 -14.91119 -14.78198 -14.52730 -14.42093 -13.90277 -13.71343 -13.61866 -13.31059 -13.08868 -12.93954 -12.75659 -12.55544 -12.50405 -12.35601 -12.15026 -11.70647 -11.64757 -11.22093 -11.04361 -11.00148 -10.75300 -10.61865 -10.52799 -10.28831 -9.96276 -9.78754 -9.38000 -9.05029 -8.90709 -8.83350 -8.21310 -6.47641 -6.19551 -3.89929 1.08008 2.11429 2.31183 2.98838 3.12114 3.22751 3.24311 3.30500 3.35528 3.62185 3.82473 4.04548 4.22655 4.22826 4.28975 4.50392 4.65280 4.70116 4.74760 4.78683 4.93136 5.02390 5.13732 5.15569 5.16633 5.21074 5.25783 5.36905 5.48948 5.55850 5.71895 5.73952 5.82508 5.84496 5.93490 5.94353 6.18214 6.42705 6.54901 6.63438 6.86890 7.48262 7.60578 7.61958 7.74658 8.37588 8.63616 9.25868 10.87923 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.001437 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.546133 B =19479.128449 C =19758.636124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.538 5.538 4 C 0.222 3.778 5 C 0.180 3.820 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.665 5.665 9 C 0.028 3.972 10 C 0.102 3.898 11 H 0.102 0.898 12 O -0.544 6.544 13 C 0.091 3.909 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.285 5.285 28 N -0.485 5.485 29 H 0.441 0.559 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.346 0.654 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.377 0.623 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.777 -13.255 19.152 37.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.003 3.997 3 N -0.268 5.268 4 C -0.062 4.062 5 C 0.068 3.932 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.297 5.297 9 C -0.103 4.103 10 C 0.042 3.958 11 H 0.120 0.880 12 O -0.349 6.349 13 C -0.035 4.035 14 N -0.388 5.388 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.114 5.114 28 N -0.203 5.203 29 H 0.286 0.714 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.224 0.776 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.237 0.763 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.832 -11.731 19.706 36.063 hybrid contribution -0.302 -2.159 -1.530 2.663 sum -28.134 -13.890 18.176 36.261 Atomic orbital electron populations 1.20416 0.83520 1.05153 1.04682 1.24424 0.96688 0.82850 0.95778 1.70362 1.01290 1.29661 1.25460 1.24213 0.92965 0.90356 0.98645 1.19780 0.84714 0.93355 0.95346 0.90928 1.21777 1.00579 1.03386 0.93622 1.60431 1.23690 1.27110 1.18510 1.22695 0.96079 0.92583 0.98899 1.22070 0.90090 0.88871 0.94770 0.88030 1.86606 1.61591 1.37773 1.48915 1.21917 0.93103 0.96698 0.91743 1.45864 1.39681 1.13681 1.39549 1.20325 0.79901 0.85735 0.82262 1.90700 1.68223 1.17416 1.63140 1.23526 1.01237 1.06608 0.98989 1.85372 1.42145 1.09471 1.46451 1.22879 1.24023 0.98304 1.23163 0.90911 1.24984 0.96428 0.94953 0.97178 1.70018 1.32825 1.07646 1.39851 0.86168 0.79022 0.79452 0.80862 1.20290 1.20752 1.19685 1.78163 0.95868 1.12158 1.25198 1.48132 1.04542 1.10150 1.57493 0.71366 0.88892 0.88250 0.89750 0.91352 0.92282 0.91299 0.83539 0.93557 0.89713 0.77598 0.90861 0.91149 0.76327 0.89134 0.89236 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.51 36.01 0.38 0.24 16 2 C 0.28 1.79 8.24 -155.70 -1.28 0.51 16 3 N -0.54 -5.09 11.19 -8.16 -0.09 -5.18 16 4 C 0.22 2.14 6.64 -156.85 -1.04 1.10 16 5 C 0.18 1.48 3.16 -68.86 -0.22 1.27 16 6 H 0.07 0.58 7.80 -51.93 -0.40 0.18 16 7 C -0.13 -1.01 9.40 37.16 0.35 -0.66 16 8 N -0.66 -5.42 6.16 -107.95 -0.66 -6.09 16 9 C 0.03 0.20 5.15 -3.83 -0.02 0.18 16 10 C 0.10 0.85 3.20 -26.73 -0.09 0.76 16 11 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 12 O -0.54 -5.13 13.15 -35.23 -0.46 -5.59 16 13 C 0.09 0.99 5.31 -4.04 -0.02 0.97 16 14 N -0.73 -9.91 5.50 -60.29 -0.33 -10.24 16 15 C 0.53 10.05 7.85 -10.99 -0.09 9.96 16 16 O -0.52 -11.88 15.86 5.55 0.09 -11.80 16 17 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 N -0.29 -2.78 12.78 32.42 0.41 -2.36 16 28 N -0.48 -3.05 7.45 32.62 0.24 -2.81 16 29 H 0.44 1.20 8.96 -182.34 -1.63 -0.44 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.10 0.18 8.14 -51.92 -0.42 -0.24 16 32 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.07 0.44 7.45 -51.93 -0.39 0.05 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.35 3.06 8.35 -39.29 -0.33 2.73 16 37 H 0.05 0.31 8.06 -51.93 -0.42 -0.10 16 38 H 0.08 0.55 7.43 -51.93 -0.39 0.16 16 39 H 0.38 2.67 9.05 45.56 0.41 3.08 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 4.63 8.47 -40.82 -0.35 4.28 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -38.81 400.46 -10.14 -48.95 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.26 Total: 3.73 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.61 Total: -1.71 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.30 Total: -52.32 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.38 Total: -17.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.81 -10.14 -48.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.984 kcal (2) G-P(sol) polarization free energy of solvation -38.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds