Wall clock time and date at job start Wed Apr 1 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30830 * 125.96240 * 2 1 4 4 C 1.33241 * 109.83247 * 180.12218 * 3 2 1 5 5 C 1.50699 * 125.52955 * 179.85240 * 4 3 2 6 6 H 1.09000 * 109.47247 * 344.71776 * 5 4 3 7 7 C 1.53006 * 109.46866 * 104.71607 * 5 4 3 8 8 N 1.46899 * 109.47244 * 224.71575 * 5 4 3 9 9 C 1.46897 * 111.00133 * 155.00305 * 8 5 4 10 10 C 1.52997 * 109.47029 * 180.02562 * 9 8 5 11 11 H 1.09002 * 109.47240 * 59.99963 * 10 9 8 12 12 O 1.42894 * 109.47255 * 299.99433 * 10 9 8 13 13 C 1.53007 * 109.47048 * 179.97438 * 10 9 8 14 14 N 1.46500 * 109.46947 * 185.00000 * 13 10 9 15 15 C 1.34777 * 119.99790 * 179.97438 * 14 13 10 16 16 O 1.21286 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00132 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47233 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00149 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99771 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00300 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00264 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47204 * 89.99785 * 23 21 19 25 25 H 1.48499 * 109.47068 * 209.99989 * 23 21 19 26 26 H 1.48502 * 109.47093 * 329.99571 * 23 21 19 27 27 N 1.30715 * 108.94398 * 359.58831 * 4 3 2 28 28 N 1.34430 * 125.96157 * 179.66167 * 2 1 3 29 29 H 0.96995 * 126.82015 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47113 * 270.31289 * 1 2 3 31 31 H 1.09009 * 109.46849 * 30.30656 * 1 2 3 32 32 H 1.08999 * 109.47196 * 150.30586 * 1 2 3 33 33 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 35 35 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 36 36 H 1.00901 * 110.99931 * 31.04632 * 8 5 4 37 37 H 1.09003 * 109.46826 * 299.99875 * 9 8 5 38 38 H 1.08993 * 109.47326 * 59.99934 * 9 8 5 39 39 H 0.96693 * 114.00360 * 300.00318 * 12 10 9 40 40 H 1.09008 * 109.47114 * 304.99924 * 13 10 9 41 41 H 1.08992 * 109.47043 * 64.99755 * 13 10 9 42 42 H 0.96998 * 120.00666 * 0.02562 * 14 13 10 43 43 H 1.09000 * 109.46649 * 300.00007 * 17 15 14 44 44 H 1.09001 * 109.47376 * 60.00197 * 17 15 14 45 45 H 0.97001 * 120.00431 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0067 6 1 4.4066 2.6262 -0.2780 7 6 5.3679 1.6542 1.3870 8 7 5.7294 1.1543 -0.9830 9 6 6.5683 2.2636 -1.4559 10 6 7.5865 1.7370 -2.4692 11 1 7.0613 1.2926 -3.3146 12 8 8.4101 0.7487 -1.8472 13 6 8.4598 2.8925 -2.9623 14 7 9.3541 2.4125 -4.0187 15 6 10.2198 3.2620 -4.6063 16 8 10.2587 4.4238 -4.2602 17 6 11.1393 2.7684 -5.6934 18 16 12.1725 4.1354 -6.2766 19 6 13.1206 3.3001 -7.5046 20 1 12.9580 2.2485 -7.6897 21 6 14.0770 3.9932 -8.2335 22 7 14.2755 5.2747 -8.0077 23 14 15.0816 3.1079 -9.5359 24 1 14.3825 3.1934 -10.8433 25 1 16.4187 3.7442 -9.6471 26 1 15.2422 1.6821 -9.1528 27 7 3.6194 -0.6168 0.0045 28 7 2.2964 -1.0881 0.0064 29 1 2.0093 -2.0145 0.0115 30 1 -0.3633 0.0056 1.0277 31 1 -0.3633 0.8873 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 6.2231 2.3301 1.3840 34 1 4.6317 2.0024 2.1113 35 1 5.6986 0.6516 1.6583 36 1 5.2821 0.6842 -1.7557 37 1 5.9401 3.0173 -1.9308 38 1 7.0931 2.7083 -0.6105 39 1 8.9083 1.0747 -1.0852 40 1 7.8244 3.6856 -3.3567 41 1 9.0518 3.2799 -2.1332 42 1 9.3227 1.4834 -4.2958 43 1 11.7750 1.9755 -5.2993 44 1 10.5469 2.3810 -6.5224 45 1 14.9442 5.7591 -8.5167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568548676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:02 Heat of formation + Delta-G solvation = -40.697142 kcal Electronic energy + Delta-G solvation = -26004.567393 eV Core-core repulsion = 21990.482417 eV Total energy + Delta-G solvation = -4014.084976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.21759 -40.71599 -39.16644 -37.34138 -35.26529 -34.58111 -33.91174 -33.38614 -32.12499 -31.16872 -29.30224 -28.86453 -27.66930 -26.10328 -24.41719 -22.77714 -22.05518 -21.62914 -20.96483 -19.84606 -18.97375 -18.06664 -17.80708 -17.49096 -16.87761 -16.85950 -16.76483 -16.39153 -16.09739 -15.73380 -15.61156 -15.26950 -14.98020 -14.63452 -14.41769 -14.26661 -14.00860 -13.84416 -13.63317 -13.43103 -13.26226 -13.16213 -13.05541 -12.88836 -12.85877 -12.66668 -12.60673 -12.26990 -11.91792 -11.73925 -11.22483 -11.14005 -11.13449 -11.12709 -10.82323 -10.51466 -10.27915 -10.13199 -9.46903 -8.66329 -8.34393 -6.12486 0.55319 1.27117 1.42836 1.47024 1.57808 1.61269 1.69408 1.73240 2.22343 2.28443 2.74610 2.99789 3.12084 3.32451 3.55152 3.59194 3.82247 3.84877 3.89848 4.07749 4.10423 4.23942 4.29022 4.32935 4.48110 4.51878 4.65430 4.66889 4.68390 4.73979 4.81003 4.89905 5.03917 5.06831 5.19949 5.24634 5.35027 5.40945 5.42316 5.88006 6.17460 6.20168 6.22489 6.48919 6.88134 7.05293 7.06972 7.23809 8.74893 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.001437 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.546133 B =19479.128449 C =19758.636124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.286 3.714 3 N -0.573 5.573 4 C 0.211 3.789 5 C 0.181 3.819 6 H 0.073 0.927 7 C -0.128 4.128 8 N -0.667 5.667 9 C 0.033 3.967 10 C 0.119 3.881 11 H 0.106 0.894 12 O -0.557 6.557 13 C 0.090 3.910 14 N -0.708 5.708 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.131 4.131 18 S -0.149 6.149 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.259 1.259 27 N -0.318 5.318 28 N -0.478 5.478 29 H 0.455 0.545 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.341 0.659 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.387 0.613 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.112 -15.467 19.120 38.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 N -0.304 5.304 4 C -0.072 4.072 5 C 0.069 3.931 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.299 5.299 9 C -0.097 4.097 10 C 0.058 3.942 11 H 0.123 0.877 12 O -0.363 6.363 13 C -0.035 4.035 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.078 5.922 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.183 1.183 27 N -0.147 5.147 28 N -0.198 5.198 29 H 0.303 0.697 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.236 0.764 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.211 -14.014 19.704 37.921 hybrid contribution -0.047 -1.550 -1.416 2.100 sum -29.258 -15.564 18.288 37.852 Atomic orbital electron populations 1.20648 0.80267 1.06511 1.06056 1.25220 0.98217 0.82097 0.93679 1.70362 1.01587 1.31311 1.27168 1.24417 0.93496 0.90549 0.98727 1.19798 0.84579 0.93165 0.95561 0.90875 1.21712 1.00899 1.02764 0.93276 1.60430 1.23724 1.27393 1.18336 1.22643 0.95754 0.92382 0.98950 1.21905 0.89538 0.87616 0.95112 0.87659 1.86587 1.61926 1.38273 1.49534 1.22106 0.92819 0.97809 0.90720 1.45633 1.38101 1.13573 1.38862 1.20032 0.80405 0.85518 0.82102 1.90689 1.69814 1.19357 1.64597 1.23377 1.00804 1.03766 1.00245 1.85525 1.44472 1.14766 1.47458 1.23217 1.24356 0.98715 1.23339 0.89999 1.26111 0.97590 0.95719 0.99584 1.70178 1.33718 1.09564 1.41274 0.84955 0.77047 0.78477 0.77509 1.19285 1.20210 1.18289 1.78054 0.97892 1.12415 1.26363 1.48070 1.03587 1.11067 1.57054 0.69659 0.87307 0.88229 0.87021 0.90234 0.92227 0.92656 0.84063 0.92926 0.88789 0.76413 0.91003 0.91159 0.74737 0.87394 0.87322 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 10.51 71.24 0.75 0.65 16 2 C 0.29 3.30 8.24 138.23 1.14 4.44 16 3 N -0.57 -10.57 11.19 -179.73 -2.01 -12.58 16 4 C 0.21 4.04 6.64 138.63 0.92 4.96 16 5 C 0.18 2.89 3.16 44.17 0.14 3.03 16 6 H 0.07 1.13 7.80 -2.39 -0.02 1.12 16 7 C -0.13 -1.84 9.40 71.98 0.68 -1.16 16 8 N -0.67 -10.24 6.16 -495.46 -3.05 -13.29 16 9 C 0.03 0.41 5.15 86.30 0.44 0.86 16 10 C 0.12 1.74 3.20 30.60 0.10 1.84 16 11 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 12 O -0.56 -9.37 13.15 -148.98 -1.96 -11.33 16 13 C 0.09 1.82 5.31 86.38 0.46 2.28 16 14 N -0.71 -17.91 5.50 -463.04 -2.55 -20.46 16 15 C 0.53 19.81 7.85 87.66 0.69 20.50 16 16 O -0.57 -26.15 15.86 -3.05 -0.05 -26.20 16 17 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 18 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 19 C -0.55 -31.70 9.50 67.95 0.65 -31.05 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.85 5.49 84.86 0.47 1.31 16 22 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 23 Si 1.00 43.96 29.55 68.60 2.03 45.98 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 N -0.32 -6.09 12.78 -51.33 -0.66 -6.74 16 28 N -0.48 -5.54 7.45 -50.71 -0.38 -5.92 16 29 H 0.45 1.88 8.96 -213.10 -1.91 -0.03 16 30 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.08 0.93 7.45 -2.39 -0.02 0.91 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.34 5.78 8.35 -89.69 -0.75 5.03 16 37 H 0.05 0.63 8.06 -2.39 -0.02 0.61 16 38 H 0.09 1.04 7.43 -2.39 -0.02 1.02 16 39 H 0.39 4.73 9.05 -74.06 -0.67 4.06 16 40 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.42 8.50 8.47 -92.71 -0.79 7.72 16 43 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -86.12 400.46 -5.69 -91.81 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -3.05 Total: 21.47 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.86 Total: 2.82 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -8.36 Total: -115.01 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -2.01 Total: -37.53 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -86.12 -5.69 -91.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568548676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.114 kcal (2) G-P(sol) polarization free energy of solvation -86.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds