Wall clock time and date at job start Wed Apr 1 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 N 1.46499 * 109.47033 * 240.00184 * 2 1 3 5 5 C 1.34768 * 120.00430 * 84.99868 * 4 2 1 6 6 O 1.21280 * 119.99783 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00306 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.47231 * 59.99636 * 7 5 4 9 9 C 1.53000 * 109.46936 * 299.99931 * 7 5 4 10 10 N 1.46497 * 109.47198 * 179.97438 * 7 5 4 11 11 C 1.34785 * 120.00212 * 204.99806 * 10 7 5 12 12 O 1.21583 * 119.99543 * 0.02562 * 11 10 7 13 13 N 1.34776 * 119.99769 * 180.02562 * 11 10 7 14 14 C 1.47419 * 125.65218 * 0.02641 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.83904 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47319 * 125.61066 * 180.16584 * 13 11 10 27 27 C 1.50702 * 109.47159 * 120.00219 * 2 1 3 28 28 O 1.20820 * 120.00146 * 119.99989 * 27 2 1 29 29 O 1.34234 * 119.99628 * 299.99585 * 27 2 1 30 30 H 1.09000 * 109.46984 * 299.99773 * 1 2 3 31 31 H 1.08992 * 109.47315 * 60.00111 * 1 2 3 32 32 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99537 * 264.99766 * 4 2 1 34 34 H 1.08998 * 109.47461 * 60.00040 * 9 7 5 35 35 H 1.09000 * 109.46990 * 180.02562 * 9 7 5 36 36 H 1.09005 * 109.47088 * 299.99711 * 9 7 5 37 37 H 0.97000 * 120.00134 * 24.99809 * 10 7 5 38 38 H 1.08994 * 110.36742 * 36.99340 * 14 13 11 39 39 H 1.09008 * 110.36374 * 274.67201 * 14 13 11 40 40 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 41 41 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 42 42 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06766 * 61.74679 * 26 13 11 45 45 H 1.08999 * 109.85130 * 300.49036 * 26 13 11 46 46 H 0.96701 * 116.99482 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6488 -0.7288 -3.5877 8 1 1.9759 -1.5506 -3.8325 9 6 4.0512 -1.2798 -3.3222 10 7 2.6976 0.2124 -4.7093 11 6 2.6178 -0.2431 -5.9753 12 8 2.5049 -1.4352 -6.1865 13 7 2.6633 0.6228 -7.0071 14 6 2.7979 2.0866 -6.8951 15 6 3.4114 2.5328 -8.2456 16 6 2.7075 1.5723 -9.2402 17 8 1.4165 2.0707 -9.5965 18 6 3.5540 1.3633 -10.4693 19 1 4.4916 1.8889 -10.5752 20 6 3.1344 0.4966 -11.4562 21 7 1.9928 -0.1435 -11.3273 22 14 4.1874 0.2317 -12.9762 23 1 5.4143 1.0626 -12.8794 24 1 4.5666 -1.2009 -13.0721 25 1 3.4187 0.6222 -14.1852 26 6 2.5836 0.2627 -8.4334 27 6 2.0324 -0.7105 1.2304 28 8 2.7270 -1.6928 1.1196 29 8 1.7081 -0.2518 2.4496 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 4.0146 -1.9802 -2.4879 35 1 4.4144 -1.7934 -4.2125 36 1 4.7242 -0.4580 -3.0775 37 1 2.7873 1.1634 -4.5408 38 1 3.4643 2.3443 -6.0720 39 1 1.8206 2.5475 -6.7517 40 1 4.4908 2.3810 -8.2536 41 1 3.1630 3.5716 -8.4635 42 1 0.9195 1.4885 -10.1874 43 1 1.6974 -0.7530 -12.0218 44 1 1.6269 -0.2145 -8.6458 45 1 3.4012 -0.4104 -8.6914 46 1 2.0542 -0.7406 3.2088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571112948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:42 Heat of formation + Delta-G solvation = -198.571404 kcal Electronic energy + Delta-G solvation = -30641.987214 eV Core-core repulsion = 26146.010675 eV Total energy + Delta-G solvation = -4495.976539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24985 -40.29742 -39.33460 -37.44515 -36.83760 -35.65590 -34.80584 -34.25088 -32.17468 -31.89532 -30.41633 -29.33475 -27.70419 -25.87579 -25.24268 -24.31609 -22.68069 -21.68178 -20.71982 -19.68130 -19.57478 -18.70706 -18.39355 -17.36604 -17.06902 -16.86811 -16.32049 -16.04417 -15.67680 -15.50226 -14.98943 -14.87793 -14.56665 -14.22859 -14.04509 -13.86299 -13.49151 -13.17954 -12.91400 -12.88045 -12.85292 -12.64150 -12.47406 -12.24966 -12.12112 -12.10021 -11.71239 -11.63168 -11.41340 -11.09090 -11.05166 -10.78337 -10.61817 -10.45647 -10.19562 -10.14270 -9.74756 -9.66114 -9.30607 -8.97295 -8.65894 -8.28957 -7.76977 -6.26872 -4.35031 1.53239 1.95743 2.23107 2.72623 3.17354 3.22762 3.30607 3.34085 3.69232 4.21154 4.27817 4.38527 4.42735 4.53915 4.56536 4.95044 5.01110 5.04924 5.12153 5.23233 5.42360 5.44741 5.65184 5.65410 5.74877 5.79597 5.83685 5.84972 6.06498 6.08322 6.12013 6.54253 6.58248 6.75571 6.90870 6.96606 6.98886 7.22369 7.26946 7.34429 7.63007 7.71853 7.75658 8.04998 8.50770 8.68789 9.08292 9.32938 9.43018 10.81003 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.002102 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.271864 B =13315.360654 C =13664.391388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 H 0.130 0.870 4 N -0.717 5.717 5 C 0.522 3.478 6 O -0.527 6.527 7 C 0.150 3.850 8 H 0.117 0.883 9 C -0.161 4.161 10 N -0.736 5.736 11 C 0.720 3.280 12 O -0.597 6.597 13 N -0.627 5.627 14 C 0.103 3.897 15 C -0.116 4.116 16 C 0.247 3.753 17 O -0.585 6.585 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.069 3.931 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.123 3.877 27 C 0.480 3.520 28 O -0.508 6.508 29 O -0.508 6.508 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.403 0.597 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.270 0.730 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 -0.139 24.996 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.147 0.853 4 N -0.374 5.374 5 C 0.308 3.692 6 O -0.402 6.402 7 C 0.040 3.960 8 H 0.135 0.865 9 C -0.220 4.220 10 N -0.396 5.396 11 C 0.422 3.578 12 O -0.477 6.477 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.154 4.154 16 C 0.206 3.794 17 O -0.394 6.394 18 C -0.574 4.574 19 H 0.085 0.915 20 C -0.134 4.134 21 N -0.533 5.533 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.001 3.999 27 C 0.321 3.679 28 O -0.396 6.396 29 O -0.320 6.320 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.235 0.765 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.858 0.099 24.754 24.769 hybrid contribution 0.727 -1.118 -0.437 1.403 sum -0.131 -1.018 24.317 24.339 Atomic orbital electron populations 1.22158 0.91397 1.03591 1.04725 1.20297 0.96515 0.97936 0.80491 0.85291 1.45767 1.68473 1.15068 1.08120 1.20849 0.76725 0.87324 0.84317 1.90721 1.49128 1.15778 1.84573 1.20418 0.99155 0.92659 0.83729 0.86550 1.22197 0.94958 1.01457 1.03368 1.44847 1.80970 1.10371 1.03369 1.15397 0.78160 0.84726 0.79552 1.90880 1.58798 1.14047 1.83928 1.48000 1.75083 1.06355 1.06935 1.22258 0.99959 0.81037 0.98804 1.22725 0.99537 1.00249 0.92848 1.19512 0.82200 0.86695 0.90952 1.86093 1.30994 1.51935 1.70420 1.21550 1.06673 1.26061 1.03128 0.91470 1.25083 0.95205 0.94441 0.98626 1.69659 1.20611 1.28260 1.34800 0.86346 0.80328 0.78046 0.82160 1.19608 1.20789 1.20774 1.22955 1.01725 1.00428 0.74802 1.23393 0.76891 0.82451 0.85205 1.90751 1.35612 1.26081 1.87117 1.84496 1.72024 1.58929 1.16523 0.89923 0.89938 0.91584 0.74939 0.91258 0.90075 0.91929 0.76039 0.92499 0.91843 0.90535 0.90541 0.76514 0.92028 0.91836 0.91696 0.72456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.42 37.16 0.35 -0.64 16 2 C 0.15 1.10 3.09 -69.08 -0.21 0.89 16 3 H 0.13 0.95 7.58 -51.93 -0.39 0.56 16 4 N -0.72 -6.01 4.84 -54.93 -0.27 -6.27 16 5 C 0.52 5.84 7.19 -10.99 -0.08 5.76 16 6 O -0.53 -7.26 15.50 5.56 0.09 -7.17 16 7 C 0.15 1.88 2.98 -69.08 -0.21 1.67 16 8 H 0.12 1.51 7.57 -51.93 -0.39 1.12 16 9 C -0.16 -1.73 9.38 37.16 0.35 -1.38 16 10 N -0.74 -11.47 4.91 -59.82 -0.29 -11.77 16 11 C 0.72 14.48 8.46 -86.91 -0.73 13.74 16 12 O -0.60 -13.86 16.33 5.29 0.09 -13.77 16 13 N -0.63 -13.11 3.33 -176.00 -0.59 -13.70 16 14 C 0.10 1.85 6.57 -2.53 -0.02 1.83 16 15 C -0.12 -2.31 6.23 -24.59 -0.15 -2.47 16 16 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 17 O -0.59 -14.81 13.08 -35.23 -0.46 -15.27 16 18 C -0.54 -13.99 8.11 -34.44 -0.28 -14.27 16 19 H 0.07 1.73 7.77 -52.49 -0.41 1.32 16 20 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 21 N -0.89 -23.84 10.96 55.43 0.61 -23.23 16 22 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.12 2.99 5.39 -2.90 -0.02 2.98 16 27 C 0.48 3.26 7.69 36.01 0.28 3.54 16 28 O -0.51 -4.78 16.60 -18.74 -0.31 -5.09 16 29 O -0.51 -2.19 13.33 -39.27 -0.52 -2.71 16 30 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.41 3.04 7.21 -40.82 -0.29 2.75 16 34 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 5.95 6.27 -40.82 -0.26 5.69 16 38 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 39 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.38 9.98 7.24 45.56 0.33 10.31 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.06 1.69 8.00 -51.93 -0.42 1.28 16 45 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 46 H 0.42 0.12 9.10 45.56 0.41 0.54 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -33.36 387.09 -6.84 -40.21 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -5.10 Total: 18.17 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: -0.89 Total: 19.29 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.54 Total: -54.97 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.12 Total: -44.01 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.36 -6.84 -40.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571112948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.362 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds