Wall clock time and date at job start Wed Apr 1 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 N 1.46499 * 109.47033 * 240.00184 * 2 1 3 5 5 C 1.34768 * 120.00430 * 84.99868 * 4 2 1 6 6 O 1.21280 * 119.99783 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00306 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.47231 * 59.99636 * 7 5 4 9 9 C 1.53000 * 109.46936 * 299.99931 * 7 5 4 10 10 N 1.46497 * 109.47198 * 179.97438 * 7 5 4 11 11 C 1.34785 * 120.00212 * 204.99806 * 10 7 5 12 12 O 1.21583 * 119.99543 * 0.02562 * 11 10 7 13 13 N 1.34776 * 119.99769 * 180.02562 * 11 10 7 14 14 C 1.47419 * 125.65218 * 0.02641 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.83904 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47319 * 125.61066 * 180.16584 * 13 11 10 27 27 C 1.50702 * 109.47159 * 120.00219 * 2 1 3 28 28 O 1.20820 * 120.00146 * 119.99989 * 27 2 1 29 29 O 1.34234 * 119.99628 * 299.99585 * 27 2 1 30 30 H 1.09000 * 109.46984 * 299.99773 * 1 2 3 31 31 H 1.08992 * 109.47315 * 60.00111 * 1 2 3 32 32 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99537 * 264.99766 * 4 2 1 34 34 H 1.08998 * 109.47461 * 60.00040 * 9 7 5 35 35 H 1.09000 * 109.46990 * 180.02562 * 9 7 5 36 36 H 1.09005 * 109.47088 * 299.99711 * 9 7 5 37 37 H 0.97000 * 120.00134 * 24.99809 * 10 7 5 38 38 H 1.08994 * 110.36742 * 36.99340 * 14 13 11 39 39 H 1.09008 * 110.36374 * 274.67201 * 14 13 11 40 40 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 41 41 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 42 42 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.06766 * 61.74679 * 26 13 11 45 45 H 1.08999 * 109.85130 * 300.49036 * 26 13 11 46 46 H 0.96701 * 116.99482 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6488 -0.7288 -3.5877 8 1 1.9759 -1.5506 -3.8325 9 6 4.0512 -1.2798 -3.3222 10 7 2.6976 0.2124 -4.7093 11 6 2.6178 -0.2431 -5.9753 12 8 2.5049 -1.4352 -6.1865 13 7 2.6633 0.6228 -7.0071 14 6 2.7979 2.0866 -6.8951 15 6 3.4114 2.5328 -8.2456 16 6 2.7075 1.5723 -9.2402 17 8 1.4165 2.0707 -9.5965 18 6 3.5540 1.3633 -10.4693 19 1 4.4916 1.8889 -10.5752 20 6 3.1344 0.4966 -11.4562 21 7 1.9928 -0.1435 -11.3273 22 14 4.1874 0.2317 -12.9762 23 1 5.4143 1.0626 -12.8794 24 1 4.5666 -1.2009 -13.0721 25 1 3.4187 0.6222 -14.1852 26 6 2.5836 0.2627 -8.4334 27 6 2.0324 -0.7105 1.2304 28 8 2.7270 -1.6928 1.1196 29 8 1.7081 -0.2518 2.4496 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 4.0146 -1.9802 -2.4879 35 1 4.4144 -1.7934 -4.2125 36 1 4.7242 -0.4580 -3.0775 37 1 2.7873 1.1634 -4.5408 38 1 3.4643 2.3443 -6.0720 39 1 1.8206 2.5475 -6.7517 40 1 4.4908 2.3810 -8.2536 41 1 3.1630 3.5716 -8.4635 42 1 0.9195 1.4885 -10.1874 43 1 1.6974 -0.7530 -12.0218 44 1 1.6269 -0.2145 -8.6458 45 1 3.4012 -0.4104 -8.6914 46 1 2.0542 -0.7406 3.2088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571112948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:41 Heat of formation + Delta-G solvation = -226.919023 kcal Electronic energy + Delta-G solvation = -30643.216459 eV Core-core repulsion = 26146.010675 eV Total energy + Delta-G solvation = -4497.205784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97736 -41.38911 -40.57508 -39.12607 -37.34400 -36.45330 -36.11038 -35.98808 -34.18909 -32.92317 -31.72135 -30.60059 -29.49073 -27.02663 -26.44663 -25.40825 -24.18163 -22.44227 -21.55329 -21.38798 -21.07506 -19.76740 -19.11492 -19.01286 -18.42905 -17.74260 -17.33925 -17.17024 -16.86789 -16.69839 -16.47452 -16.10588 -16.06499 -15.59222 -15.01973 -14.87469 -14.74654 -14.69371 -14.53434 -14.07201 -13.86742 -13.62781 -13.48883 -13.40968 -13.29216 -13.25246 -12.86450 -12.75877 -12.71927 -12.61703 -12.51191 -12.31028 -12.24219 -12.08121 -11.66080 -11.35372 -11.18192 -11.15508 -10.64098 -10.50195 -10.35043 -10.27859 -9.45323 -8.25372 -6.40813 1.01189 1.19308 1.32618 1.41544 1.44621 1.55339 1.73692 2.09271 2.26117 2.39119 2.99390 3.01344 3.38775 3.80966 3.85547 3.96668 3.97675 4.04375 4.08870 4.11224 4.18075 4.37008 4.56582 4.62060 4.62851 4.71705 4.72998 4.74950 5.04874 5.10820 5.13277 5.16143 5.16836 5.22492 5.32854 5.37808 5.48356 5.49725 5.76336 6.01055 6.12639 6.18628 6.65898 6.81985 6.90534 6.99464 7.29971 7.37864 7.49763 8.81137 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.002102 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.271864 B =13315.360654 C =13664.391388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.150 3.850 3 H 0.130 0.870 4 N -0.704 5.704 5 C 0.532 3.468 6 O -0.553 6.553 7 C 0.144 3.856 8 H 0.111 0.889 9 C -0.153 4.153 10 N -0.720 5.720 11 C 0.717 3.283 12 O -0.634 6.634 13 N -0.634 5.634 14 C 0.107 3.893 15 C -0.109 4.109 16 C 0.232 3.768 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.278 1.278 26 C 0.142 3.858 27 C 0.491 3.509 28 O -0.536 6.536 29 O -0.500 6.500 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.419 0.581 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.377 0.623 43 H 0.270 0.730 44 H 0.029 0.971 45 H 0.034 0.966 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 0.732 27.190 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.148 0.852 4 N -0.360 5.360 5 C 0.317 3.683 6 O -0.430 6.430 7 C 0.035 3.965 8 H 0.128 0.872 9 C -0.212 4.212 10 N -0.378 5.378 11 C 0.419 3.581 12 O -0.516 6.516 13 N -0.370 5.370 14 C -0.015 4.015 15 C -0.147 4.147 16 C 0.191 3.809 17 O -0.397 6.397 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.176 4.176 21 N -0.556 5.556 22 Si 0.790 3.210 23 H -0.189 1.189 24 H -0.210 1.210 25 H -0.204 1.204 26 C 0.018 3.982 27 C 0.333 3.667 28 O -0.426 6.426 29 O -0.314 6.314 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.258 0.742 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.248 0.752 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.226 0.774 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -0.090 0.994 27.051 27.069 hybrid contribution 0.449 -1.410 -0.988 1.779 sum 0.358 -0.416 26.062 26.068 Atomic orbital electron populations 1.22120 0.90504 1.03953 1.04786 1.20421 0.97170 0.97844 0.80172 0.85204 1.45627 1.67324 1.15273 1.07802 1.20430 0.76560 0.86773 0.84498 1.90716 1.50589 1.16742 1.84974 1.20643 1.00423 0.92070 0.83405 0.87162 1.22131 0.93597 1.02052 1.03382 1.44697 1.79477 1.11244 1.02429 1.15532 0.77889 0.84078 0.80574 1.90848 1.60358 1.15708 1.84706 1.47937 1.75496 1.07814 1.05776 1.22376 1.01014 0.78938 0.99126 1.22719 0.99663 0.99959 0.92372 1.19733 0.81811 0.87889 0.91427 1.86084 1.31544 1.51816 1.70225 1.21863 1.07038 1.26262 1.04128 0.91377 1.25830 0.96272 0.94244 1.01299 1.69763 1.21755 1.28549 1.35491 0.85407 0.79025 0.77682 0.78914 1.18860 1.20979 1.20369 1.22440 0.98479 0.99915 0.77357 1.23136 0.76143 0.81684 0.85702 1.90752 1.36991 1.27301 1.87580 1.84450 1.71617 1.58893 1.16408 0.88176 0.91537 0.91081 0.74181 0.88365 0.92366 0.91141 0.75213 0.88498 0.91443 0.89664 0.89185 0.77359 0.92044 0.95256 0.94742 0.70192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.42 71.98 0.68 -0.95 16 2 C 0.15 1.84 3.09 44.25 0.14 1.98 16 3 H 0.13 1.65 7.58 -2.39 -0.02 1.63 16 4 N -0.70 -10.55 4.84 -446.11 -2.16 -12.71 16 5 C 0.53 11.11 7.19 87.66 0.63 11.74 16 6 O -0.55 -14.39 15.50 -3.03 -0.05 -14.44 16 7 C 0.14 3.45 2.98 44.25 0.13 3.58 16 8 H 0.11 2.83 7.57 -2.39 -0.02 2.81 16 9 C -0.15 -3.07 9.38 71.98 0.68 -2.40 16 10 N -0.72 -21.80 4.91 -461.42 -2.27 -24.06 16 11 C 0.72 29.01 8.46 179.05 1.51 30.53 16 12 O -0.63 -30.23 16.33 -3.98 -0.06 -30.29 16 13 N -0.63 -26.59 3.33 -829.01 -2.76 -29.36 16 14 C 0.11 3.69 6.57 86.85 0.57 4.26 16 15 C -0.11 -4.23 6.23 31.98 0.20 -4.03 16 16 C 0.23 11.36 0.85 -10.35 -0.01 11.35 16 17 O -0.59 -30.25 13.08 -148.98 -1.95 -32.20 16 18 C -0.55 -29.22 8.11 25.60 0.21 -29.01 16 19 H 0.07 3.49 7.77 -2.91 -0.02 3.46 16 20 C 0.02 1.28 5.27 84.66 0.45 1.73 16 21 N -0.92 -50.17 10.96 21.45 0.24 -49.94 16 22 Si 0.96 42.29 29.54 68.60 2.03 44.31 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.14 7.16 5.39 86.67 0.47 7.62 16 27 C 0.49 5.55 7.69 71.24 0.55 6.09 16 28 O -0.54 -8.99 16.60 21.98 0.36 -8.63 16 29 O -0.50 -2.89 13.33 -51.46 -0.69 -3.58 16 30 H 0.10 0.70 8.11 -2.39 -0.02 0.68 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 5.38 7.21 -92.71 -0.67 4.71 16 34 H 0.10 1.39 7.56 -2.39 -0.02 1.37 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.41 11.36 6.27 -92.71 -0.58 10.78 16 38 H 0.10 2.58 7.30 -2.39 -0.02 2.56 16 39 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.08 3.13 8.03 -2.38 -0.02 3.11 16 41 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 42 H 0.38 20.26 7.24 -74.06 -0.54 19.72 16 43 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 44 H 0.03 1.64 8.00 -2.39 -0.02 1.62 16 45 H 0.03 1.90 7.81 -2.39 -0.02 1.89 16 46 H 0.43 -1.01 9.10 -74.06 -0.67 -1.69 16 Total: -1.00 -73.51 387.09 -2.51 -76.02 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -1.40 Total: 42.37 kcal Atomic # 6 Polarization: 36.30 SS G_CDS: 6.20 Total: 42.50 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -6.96 Total: -116.06 kcal Atomic # 8 Polarization: -86.75 SS G_CDS: -2.38 Total: -89.13 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -73.51 -2.51 -76.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571112948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.901 kcal (2) G-P(sol) polarization free energy of solvation -73.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds