Wall clock time and date at job start Wed Apr 1 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 N 1.46504 * 109.47066 * 184.99885 * 4 2 1 6 6 C 1.46498 * 120.00281 * 270.00319 * 5 4 2 7 7 C 1.34778 * 119.99724 * 89.99750 * 5 4 2 8 8 O 1.21284 * 120.00257 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99892 * 180.02562 * 7 5 4 10 10 S 1.81002 * 109.47042 * 180.02562 * 9 7 5 11 11 C 1.76194 * 99.99794 * 179.97438 * 10 9 7 12 12 H 1.08006 * 120.00253 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00001 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46660 * 89.99936 * 15 13 11 17 17 H 1.48498 * 109.47281 * 209.99616 * 15 13 11 18 18 H 1.48495 * 109.47072 * 330.00198 * 15 13 11 19 19 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 20 20 C 1.46901 * 110.99793 * 275.00325 * 19 2 1 21 21 C 1.50701 * 109.46921 * 179.97438 * 20 19 2 22 22 N 1.30726 * 125.53911 * 359.69549 * 21 20 19 23 23 C 1.34451 * 109.94829 * 179.88681 * 22 21 20 24 24 O 1.21718 * 125.92770 * 180.15199 * 23 22 21 25 25 N 1.35002 * 108.14548 * 0.37392 * 23 22 21 26 26 C 1.46496 * 126.85969 * 179.81556 * 25 23 22 27 27 N 1.35147 * 125.53888 * 179.97438 * 21 20 19 28 28 H 0.97007 * 126.64779 * 359.93442 * 27 21 20 29 29 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 30 30 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 32 32 H 1.09000 * 109.46986 * 305.00035 * 4 2 1 33 33 H 1.08994 * 109.46981 * 65.00265 * 4 2 1 34 34 H 1.08997 * 109.47226 * 89.99861 * 6 5 4 35 35 H 1.08997 * 109.46757 * 210.00104 * 6 5 4 36 36 H 1.09001 * 109.46470 * 329.99513 * 6 5 4 37 37 H 1.09002 * 109.46522 * 300.00118 * 9 7 5 38 38 H 1.08995 * 109.46930 * 60.00029 * 9 7 5 39 39 H 0.96990 * 120.00469 * 180.02562 * 14 13 11 40 40 H 1.00898 * 110.99995 * 38.95403 * 19 2 1 41 41 H 1.09002 * 109.47401 * 59.99808 * 20 19 2 42 42 H 1.09001 * 109.46874 * 299.99821 * 20 19 2 43 43 H 1.08998 * 109.47197 * 269.95717 * 26 25 23 44 44 H 1.09007 * 109.46912 * 29.95602 * 26 25 23 45 45 H 1.09004 * 109.47208 * 149.95311 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0757 -1.8986 -0.6114 8 8 3.3851 -2.7768 -0.1393 9 6 5.5777 -2.0065 -0.5505 10 16 6.0387 -3.5472 0.2801 11 6 7.7946 -3.4175 0.2126 12 1 8.2552 -2.5570 -0.2498 13 6 8.5859 -4.4207 0.7548 14 7 9.8977 -4.3236 0.7049 15 14 7.7893 -5.9087 1.5552 16 1 7.5805 -6.9672 0.5347 17 1 8.6738 -6.4253 2.6303 18 1 6.4804 -5.5166 2.1366 19 7 2.0196 -0.6925 1.1995 20 6 2.0823 0.2227 2.3469 21 6 2.5872 -0.5217 3.5561 22 7 2.9143 -1.7870 3.5876 23 6 3.3258 -2.1238 4.8225 24 8 3.6997 -3.2273 5.1746 25 7 3.2477 -1.0267 5.6055 26 6 3.5932 -0.9347 7.0261 27 7 2.7704 0.0091 4.7854 28 1 2.6046 0.9275 5.0501 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6053 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 4.5400 0.9848 -0.9982 35 1 5.2734 -0.1926 -2.1136 36 1 3.8103 0.6987 -2.5963 37 1 5.9833 -2.0040 -1.5622 38 1 5.9805 -1.1594 0.0046 39 1 10.4507 -5.0248 1.0834 40 1 1.4495 -1.4979 1.4101 41 1 1.0869 0.6164 2.5525 42 1 2.7587 1.0463 2.1182 43 1 2.7133 -1.1588 7.6292 44 1 4.3827 -1.6505 7.2552 45 1 3.9406 0.0737 7.2510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571378087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:05 Heat of formation + Delta-G solvation = 47.450187 kcal Electronic energy + Delta-G solvation = -28572.924010 eV Core-core repulsion = 24562.661389 eV Total energy + Delta-G solvation = -4010.262621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19565 -39.38507 -37.53236 -36.85291 -34.94151 -34.10656 -32.24391 -31.85165 -31.24909 -29.31299 -27.56620 -27.12079 -25.60549 -25.44284 -24.99855 -21.79508 -21.36637 -20.88674 -19.10426 -18.47313 -17.44872 -16.74447 -16.54241 -16.17290 -16.00005 -15.53806 -15.44602 -15.15498 -14.78729 -14.69379 -14.43648 -13.66170 -13.59668 -13.32904 -13.15260 -13.00892 -12.95593 -12.85752 -12.63651 -12.55767 -12.29980 -12.28222 -12.06285 -11.73348 -11.47131 -11.09713 -11.01236 -10.90190 -10.80333 -10.34280 -10.07843 -9.65452 -9.63713 -9.02235 -8.79964 -8.59286 -8.46764 -8.18941 -8.13048 -6.62843 -6.10948 -3.77897 1.26204 1.39011 3.01450 3.39136 3.41430 3.50168 3.51588 3.62032 3.77716 3.83600 3.94920 4.16303 4.54987 4.63650 4.67049 4.73701 4.88613 4.90933 4.95157 4.98685 5.04883 5.17473 5.26513 5.28966 5.29215 5.31384 5.48074 5.50027 5.59945 5.62954 5.78463 5.79611 5.80836 5.97136 6.02601 6.07637 6.26649 6.73280 6.90901 7.06755 7.35273 7.82441 8.06509 8.12271 8.38824 8.58038 8.93477 9.37316 10.98290 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.007651 B = 0.004887 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.574572 B = 5727.992166 C = 8545.629043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 H 0.078 0.922 4 C 0.131 3.869 5 N -0.617 5.617 6 C 0.084 3.916 7 C 0.542 3.458 8 O -0.493 6.493 9 C -0.118 4.118 10 S -0.132 6.132 11 C -0.519 4.519 12 H 0.084 0.916 13 C 0.096 3.904 14 N -0.887 5.887 15 Si 0.851 3.149 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.229 1.229 19 N -0.650 5.650 20 C 0.133 3.867 21 C 0.388 3.612 22 N -0.523 5.523 23 C 0.634 3.366 24 O -0.523 6.523 25 N -0.451 5.451 26 C 0.112 3.888 27 N -0.507 5.507 28 H 0.440 0.560 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.364 0.636 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.251 20.681 3.243 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.097 0.903 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.060 4.060 7 C 0.329 3.671 8 O -0.365 6.365 9 C -0.268 4.268 10 S 0.095 5.905 11 C -0.666 4.666 12 H 0.102 0.898 13 C -0.112 4.112 14 N -0.524 5.524 15 Si 0.676 3.324 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.153 1.153 19 N -0.284 5.284 20 C 0.001 3.999 21 C 0.113 3.887 22 N -0.270 5.270 23 C 0.333 3.667 24 O -0.393 6.393 25 N -0.283 5.283 26 C -0.030 4.030 27 N -0.240 5.240 28 H 0.287 0.713 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.186 0.814 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.063 17.843 3.780 27.862 hybrid contribution 0.024 1.800 1.011 2.065 sum -21.040 19.643 4.791 29.180 Atomic orbital electron populations 1.22492 0.96886 1.02797 1.02128 1.22065 0.92332 0.98149 0.91652 0.90350 1.21348 0.81015 1.01727 0.95203 1.47543 1.05402 1.21826 1.60569 1.21696 0.95867 0.90788 0.97677 1.19908 0.89463 0.80927 0.76802 1.90680 1.64088 1.38622 1.43110 1.23260 0.94697 1.04607 1.04270 1.84975 1.06716 1.23143 1.75704 1.22391 0.88948 1.11029 1.44276 0.89751 1.24674 0.94192 0.97828 0.94482 1.69948 1.03423 1.34318 1.44702 0.86798 0.82082 0.83258 0.80284 1.19325 1.20188 1.15274 1.60133 1.59320 1.08048 1.00890 1.20509 0.99599 0.94344 0.85483 1.23836 0.89192 0.90626 0.85072 1.72076 1.25136 1.10704 1.19066 1.18498 0.81308 0.83881 0.83017 1.90993 1.51740 1.19672 1.76876 1.49584 1.65450 1.04685 1.08621 1.21792 1.01929 1.03832 0.75434 1.44695 1.64350 1.08106 1.06865 0.71325 0.91783 0.91781 0.92741 0.89847 0.90746 0.93358 0.90966 0.91892 0.89526 0.89375 0.92207 0.81413 0.91997 0.87719 0.91529 0.88255 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.16 37.15 0.34 -0.71 16 2 C 0.07 0.54 2.89 -67.71 -0.20 0.35 16 3 H 0.08 0.50 7.80 -51.93 -0.40 0.09 16 4 C 0.13 1.30 5.24 -4.04 -0.02 1.28 16 5 N -0.62 -8.01 2.78 -181.57 -0.50 -8.51 16 6 C 0.08 0.82 10.29 59.85 0.62 1.43 16 7 C 0.54 10.11 7.03 -10.98 -0.08 10.04 16 8 O -0.49 -10.89 14.59 5.55 0.08 -10.81 16 9 C -0.12 -2.49 4.71 36.01 0.17 -2.32 16 10 S -0.13 -3.66 18.55 -107.50 -1.99 -5.65 16 11 C -0.52 -15.99 10.04 30.94 0.31 -15.68 16 12 H 0.08 2.68 8.03 -52.48 -0.42 2.26 16 13 C 0.10 3.01 5.50 -17.43 -0.10 2.92 16 14 N -0.89 -28.30 13.97 55.49 0.78 -27.52 16 15 Si 0.85 23.92 27.74 -169.99 -4.72 19.20 16 16 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.23 -6.69 6.74 56.52 0.38 -6.31 16 19 N -0.65 -7.11 4.28 -107.99 -0.46 -7.57 16 20 C 0.13 1.02 6.11 -4.97 -0.03 0.99 16 21 C 0.39 4.51 7.97 -155.13 -1.24 3.28 16 22 N -0.52 -9.53 10.69 -13.83 -0.15 -9.68 16 23 C 0.63 12.26 8.97 -87.01 -0.78 11.48 16 24 O -0.52 -12.61 17.91 5.17 0.09 -12.52 16 25 N -0.45 -5.80 4.06 -72.07 -0.29 -6.09 16 26 C 0.11 0.95 11.46 59.84 0.69 1.64 16 27 N -0.51 -4.46 7.36 32.73 0.24 -4.22 16 28 H 0.44 1.63 8.96 -182.31 -1.63 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.05 0.26 7.45 -51.93 -0.39 -0.13 16 32 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 33 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 36 H 0.06 0.44 7.89 -51.93 -0.41 0.03 16 37 H 0.09 1.71 7.40 -51.91 -0.38 1.33 16 38 H 0.09 1.81 8.11 -51.92 -0.42 1.39 16 39 H 0.27 7.99 8.31 -40.82 -0.34 7.65 16 40 H 0.36 4.68 8.31 -39.29 -0.33 4.35 16 41 H 0.06 0.27 7.44 -51.93 -0.39 -0.12 16 42 H 0.10 0.62 8.06 -51.93 -0.42 0.20 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.98 8.12 -51.92 -0.42 0.56 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -45.05 390.57 -9.37 -54.42 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.01 Total: -1.63 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -0.32 Total: 14.69 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.39 Total: -63.59 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.72 Total: 19.20 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -45.05 -9.37 -54.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571378087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.871 kcal (2) G-P(sol) polarization free energy of solvation -45.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds