Wall clock time and date at job start Wed Apr 1 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 N 1.46504 * 109.47066 * 184.99885 * 4 2 1 6 6 C 1.46498 * 120.00281 * 270.00319 * 5 4 2 7 7 C 1.34778 * 119.99724 * 89.99750 * 5 4 2 8 8 O 1.21284 * 120.00257 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99892 * 180.02562 * 7 5 4 10 10 S 1.81002 * 109.47042 * 180.02562 * 9 7 5 11 11 C 1.76194 * 99.99794 * 179.97438 * 10 9 7 12 12 H 1.08006 * 120.00253 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00001 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46660 * 89.99936 * 15 13 11 17 17 H 1.48498 * 109.47281 * 209.99616 * 15 13 11 18 18 H 1.48495 * 109.47072 * 330.00198 * 15 13 11 19 19 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 20 20 C 1.46901 * 110.99793 * 275.00325 * 19 2 1 21 21 C 1.50701 * 109.46921 * 179.97438 * 20 19 2 22 22 N 1.30726 * 125.53911 * 359.69549 * 21 20 19 23 23 C 1.34451 * 109.94829 * 179.88681 * 22 21 20 24 24 O 1.21718 * 125.92770 * 180.15199 * 23 22 21 25 25 N 1.35002 * 108.14548 * 0.37392 * 23 22 21 26 26 C 1.46496 * 126.85969 * 179.81556 * 25 23 22 27 27 N 1.35147 * 125.53888 * 179.97438 * 21 20 19 28 28 H 0.97007 * 126.64779 * 359.93442 * 27 21 20 29 29 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 30 30 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 32 32 H 1.09000 * 109.46986 * 305.00035 * 4 2 1 33 33 H 1.08994 * 109.46981 * 65.00265 * 4 2 1 34 34 H 1.08997 * 109.47226 * 89.99861 * 6 5 4 35 35 H 1.08997 * 109.46757 * 210.00104 * 6 5 4 36 36 H 1.09001 * 109.46470 * 329.99513 * 6 5 4 37 37 H 1.09002 * 109.46522 * 300.00118 * 9 7 5 38 38 H 1.08995 * 109.46930 * 60.00029 * 9 7 5 39 39 H 0.96990 * 120.00469 * 180.02562 * 14 13 11 40 40 H 1.00898 * 110.99995 * 38.95403 * 19 2 1 41 41 H 1.09002 * 109.47401 * 59.99808 * 20 19 2 42 42 H 1.09001 * 109.46874 * 299.99821 * 20 19 2 43 43 H 1.08998 * 109.47197 * 269.95717 * 26 25 23 44 44 H 1.09007 * 109.46912 * 29.95602 * 26 25 23 45 45 H 1.09004 * 109.47208 * 149.95311 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0757 -1.8986 -0.6114 8 8 3.3851 -2.7768 -0.1393 9 6 5.5777 -2.0065 -0.5505 10 16 6.0387 -3.5472 0.2801 11 6 7.7946 -3.4175 0.2126 12 1 8.2552 -2.5570 -0.2498 13 6 8.5859 -4.4207 0.7548 14 7 9.8977 -4.3236 0.7049 15 14 7.7893 -5.9087 1.5552 16 1 7.5805 -6.9672 0.5347 17 1 8.6738 -6.4253 2.6303 18 1 6.4804 -5.5166 2.1366 19 7 2.0196 -0.6925 1.1995 20 6 2.0823 0.2227 2.3469 21 6 2.5872 -0.5217 3.5561 22 7 2.9143 -1.7870 3.5876 23 6 3.3258 -2.1238 4.8225 24 8 3.6997 -3.2273 5.1746 25 7 3.2477 -1.0267 5.6055 26 6 3.5932 -0.9347 7.0261 27 7 2.7704 0.0091 4.7854 28 1 2.6046 0.9275 5.0501 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6053 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 4.5400 0.9848 -0.9982 35 1 5.2734 -0.1926 -2.1136 36 1 3.8103 0.6987 -2.5963 37 1 5.9833 -2.0040 -1.5622 38 1 5.9805 -1.1594 0.0046 39 1 10.4507 -5.0248 1.0834 40 1 1.4495 -1.4979 1.4101 41 1 1.0869 0.6164 2.5525 42 1 2.7587 1.0463 2.1182 43 1 2.7133 -1.1588 7.6292 44 1 4.3827 -1.6505 7.2552 45 1 3.9406 0.0737 7.2510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571378087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:05 Heat of formation + Delta-G solvation = 8.948536 kcal Electronic energy + Delta-G solvation = -28574.593567 eV Core-core repulsion = 24562.661389 eV Total energy + Delta-G solvation = -4011.932177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.27150 -40.57497 -38.66579 -37.94136 -36.04893 -35.09197 -34.66553 -32.83543 -32.14549 -30.68826 -28.34834 -28.01192 -27.79725 -26.36979 -26.00809 -22.80869 -22.28333 -21.73654 -20.49733 -19.50814 -19.33230 -17.86432 -17.72042 -17.31759 -17.17756 -16.95039 -16.65066 -16.55534 -16.13254 -15.65985 -15.53731 -15.34961 -14.94037 -14.48857 -14.38584 -14.21191 -13.88638 -13.72685 -13.61608 -13.43214 -13.34438 -13.26055 -13.12092 -13.02419 -12.92856 -12.70503 -12.49479 -12.19093 -12.17754 -11.89767 -11.71885 -11.16982 -11.09835 -10.88437 -10.50988 -10.38391 -9.63213 -9.44694 -8.98245 -8.89362 -8.53036 -6.17641 0.35955 0.42648 1.03470 1.24730 1.50146 1.61021 2.00465 2.24563 2.35867 2.40828 2.55391 2.79580 2.85937 3.18387 3.49467 3.90217 3.95254 4.07742 4.12781 4.28722 4.33711 4.34797 4.42058 4.45119 4.51566 4.57459 4.59536 4.60402 4.73500 4.84983 4.86296 4.94654 5.00141 5.08399 5.10542 5.17166 5.43442 5.70837 5.89567 6.09439 6.16644 6.38838 6.52603 6.62060 6.94971 6.99534 7.16087 7.57763 8.59643 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.007651 B = 0.004887 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.574572 B = 5727.992166 C = 8545.629043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 H 0.108 0.892 4 C 0.124 3.876 5 N -0.601 5.601 6 C 0.075 3.925 7 C 0.543 3.457 8 O -0.537 6.537 9 C -0.099 4.099 10 S -0.182 6.182 11 C -0.522 4.522 12 H 0.063 0.937 13 C 0.053 3.947 14 N -0.916 5.916 15 Si 0.903 3.097 16 H -0.256 1.256 17 H -0.259 1.259 18 H -0.254 1.254 19 N -0.686 5.686 20 C 0.136 3.864 21 C 0.399 3.601 22 N -0.592 5.592 23 C 0.609 3.391 24 O -0.602 6.602 25 N -0.446 5.446 26 C 0.103 3.897 27 N -0.468 5.468 28 H 0.469 0.531 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.276 0.724 40 H 0.347 0.653 41 H 0.110 0.890 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.511 25.163 2.681 34.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.033 4.033 3 H 0.126 0.874 4 C 0.001 3.999 5 N -0.335 5.335 6 C -0.067 4.067 7 C 0.328 3.672 8 O -0.413 6.413 9 C -0.251 4.251 10 S 0.045 5.955 11 C -0.670 4.670 12 H 0.081 0.919 13 C -0.152 4.152 14 N -0.555 5.555 15 Si 0.727 3.273 16 H -0.180 1.180 17 H -0.184 1.184 18 H -0.178 1.178 19 N -0.319 5.319 20 C 0.005 3.995 21 C 0.124 3.876 22 N -0.342 5.342 23 C 0.307 3.693 24 O -0.479 6.479 25 N -0.275 5.275 26 C -0.037 4.037 27 N -0.203 5.203 28 H 0.322 0.678 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.166 0.834 41 H 0.128 0.872 42 H 0.152 0.848 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.347 22.520 3.226 32.598 hybrid contribution 0.630 0.706 1.088 1.442 sum -22.716 23.226 4.315 32.774 Atomic orbital electron populations 1.22394 0.95123 1.02039 1.03797 1.22054 0.93592 0.98501 0.89193 0.87448 1.21702 0.78479 1.01299 0.98408 1.47454 1.07183 1.20480 1.58367 1.21980 0.95358 0.89936 0.99419 1.19466 0.87879 0.82291 0.77523 1.90679 1.64328 1.40709 1.45580 1.23232 0.97538 1.00415 1.03870 1.85058 1.04643 1.28458 1.77384 1.22512 0.90654 1.10217 1.43592 0.91872 1.25363 0.94713 1.00052 0.95072 1.69995 1.04275 1.35495 1.45692 0.86021 0.80299 0.80949 0.80074 1.17995 1.18376 1.17838 1.60081 1.60064 1.08792 1.02949 1.20898 1.02413 0.93436 0.82800 1.24661 0.87017 0.89184 0.86694 1.71939 1.28405 1.14426 1.19413 1.18736 0.81966 0.84322 0.84255 1.90893 1.55682 1.22845 1.78437 1.49527 1.63678 1.04516 1.09756 1.22144 1.02493 1.05926 0.73095 1.44695 1.61786 1.08278 1.05516 0.67812 0.90014 0.93822 0.91071 0.92840 0.86765 0.91640 0.92387 0.87920 0.88200 0.88729 0.91467 0.83356 0.87229 0.84817 0.89437 0.90377 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.16 71.98 0.66 -0.67 16 2 C 0.08 0.90 2.89 44.91 0.13 1.03 16 3 H 0.11 0.67 7.80 -2.39 -0.02 0.66 16 4 C 0.12 2.10 5.24 86.38 0.45 2.55 16 5 N -0.60 -14.13 2.78 -846.75 -2.35 -16.48 16 6 C 0.08 1.18 10.29 127.77 1.31 2.49 16 7 C 0.54 20.14 7.03 87.66 0.62 20.75 16 8 O -0.54 -24.50 14.59 -3.04 -0.04 -24.54 16 9 C -0.10 -4.24 4.71 71.24 0.34 -3.90 16 10 S -0.18 -10.45 18.55 -56.49 -1.05 -11.50 16 11 C -0.52 -33.16 10.04 67.95 0.68 -32.47 16 12 H 0.06 4.15 8.03 -2.91 -0.02 4.13 16 13 C 0.05 3.41 5.50 84.86 0.47 3.88 16 14 N -0.92 -59.40 13.97 21.65 0.30 -59.10 16 15 Si 0.90 51.05 27.74 68.60 1.90 52.95 16 16 H -0.26 -13.77 7.11 99.48 0.71 -13.07 16 17 H -0.26 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.25 -15.33 6.74 99.48 0.67 -14.66 16 19 N -0.69 -13.58 4.28 -495.56 -2.12 -15.70 16 20 C 0.14 1.54 6.11 85.56 0.52 2.06 16 21 C 0.40 8.59 7.97 138.03 1.10 9.69 16 22 N -0.59 -22.39 10.69 -316.05 -3.38 -25.76 16 23 C 0.61 24.96 8.97 179.09 1.61 26.57 16 24 O -0.60 -31.75 17.91 -4.41 -0.08 -31.83 16 25 N -0.45 -11.23 4.06 -500.00 -2.03 -13.26 16 26 C 0.10 1.64 11.46 127.77 1.46 3.10 16 27 N -0.47 -6.91 7.36 -50.37 -0.37 -7.28 16 28 H 0.47 1.21 8.96 -213.07 -1.91 -0.70 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.04 0.53 8.13 -2.39 -0.02 0.51 16 31 H 0.07 0.33 7.45 -2.39 -0.02 0.31 16 32 H 0.05 1.26 7.42 -2.39 -0.02 1.24 16 33 H 0.11 1.03 7.89 -2.39 -0.02 1.02 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.10 6.44 -2.39 -0.02 1.09 16 36 H 0.10 0.85 7.89 -2.39 -0.02 0.84 16 37 H 0.10 3.95 7.40 -2.39 -0.02 3.93 16 38 H 0.09 3.87 8.11 -2.40 -0.02 3.85 16 39 H 0.28 16.60 8.31 -92.72 -0.77 15.83 16 40 H 0.35 8.91 8.31 -89.70 -0.74 8.17 16 41 H 0.11 0.29 7.44 -2.39 -0.02 0.27 16 42 H 0.13 0.81 8.06 -2.39 -0.02 0.79 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.62 8.12 -2.38 -0.02 1.60 16 45 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -110.12 390.57 -1.53 -111.64 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -1.66 Total: 5.79 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 9.35 Total: 35.07 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -9.95 Total: -137.59 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.12 Total: -56.37 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 1.90 Total: 52.95 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.05 Total: -11.50 kcal Total: -110.12 -1.53 -111.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571378087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.592 kcal (2) G-P(sol) polarization free energy of solvation -110.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds