Wall clock time and date at job start Wed Apr 1 2020 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46660 * 2 1 4 4 C 1.52998 * 109.47091 * 119.99884 * 2 1 3 5 5 N 1.46506 * 109.46508 * 176.70239 * 4 2 1 6 6 C 1.46501 * 119.99935 * 83.70594 * 5 4 2 7 7 C 1.34771 * 119.99881 * 263.69748 * 5 4 2 8 8 O 1.21283 * 120.00483 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00050 * 179.72883 * 7 5 4 10 10 S 1.81002 * 109.47293 * 180.02562 * 9 7 5 11 11 C 1.76202 * 100.00195 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99706 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00179 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00136 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00056 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.47036 * 89.99950 * 15 13 11 17 17 H 1.48498 * 109.47499 * 209.99849 * 15 13 11 18 18 H 1.48500 * 109.47150 * 330.00086 * 15 13 11 19 19 N 1.46894 * 109.47059 * 240.00704 * 2 1 3 20 20 C 1.46895 * 111.00701 * 78.68594 * 19 2 1 21 21 C 1.50694 * 109.47433 * 179.97438 * 20 19 2 22 22 N 1.30734 * 125.54080 * 359.69509 * 21 20 19 23 23 C 1.34448 * 109.94564 * 179.82815 * 22 21 20 24 24 O 1.21718 * 125.92438 * 180.17708 * 23 22 21 25 25 N 1.34997 * 108.15010 * 0.42803 * 23 22 21 26 26 C 1.46500 * 126.86086 * 179.76209 * 25 23 22 27 27 N 1.35157 * 125.53880 * 179.97438 * 21 20 19 28 28 H 0.97001 * 126.65268 * 0.02562 * 27 21 20 29 29 H 1.09004 * 109.47384 * 299.99833 * 1 2 3 30 30 H 1.09005 * 109.47337 * 60.00256 * 1 2 3 31 31 H 1.09002 * 109.46660 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46914 * 56.70683 * 4 2 1 33 33 H 1.08994 * 109.47336 * 296.69637 * 4 2 1 34 34 H 1.09002 * 109.46349 * 265.09000 * 6 5 4 35 35 H 1.09000 * 109.47263 * 25.09119 * 6 5 4 36 36 H 1.08996 * 109.46980 * 145.09858 * 6 5 4 37 37 H 1.08995 * 109.47279 * 300.00205 * 9 7 5 38 38 H 1.09001 * 109.47420 * 60.00288 * 9 7 5 39 39 H 0.96995 * 119.99898 * 179.97438 * 14 13 11 40 40 H 1.00905 * 110.99402 * 202.64160 * 19 2 1 41 41 H 1.09002 * 109.46791 * 300.00003 * 20 19 2 42 42 H 1.09000 * 109.46929 * 59.99424 * 20 19 2 43 43 H 1.09000 * 109.47219 * 269.98021 * 26 25 23 44 44 H 1.09006 * 109.46891 * 29.97730 * 26 25 23 45 45 H 1.08998 * 109.46949 * 149.98024 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5029 -0.7903 1.2100 6 6 4.3026 0.3448 1.6772 7 6 4.1129 -1.8982 0.7444 8 8 3.4509 -2.8378 0.3573 9 6 5.6176 -1.9670 0.6983 10 16 6.1282 -3.5691 0.0285 11 6 7.8792 -3.3812 0.0868 12 1 8.3118 -2.4651 0.4612 13 6 8.7025 -4.4099 -0.3495 14 7 10.0105 -4.2693 -0.3064 15 14 7.9543 -5.9939 -0.9978 16 1 7.7409 -5.8773 -2.4629 17 1 8.8744 -7.1260 -0.7202 18 1 6.6526 -6.2378 -0.3260 19 7 2.0196 -0.6923 -1.1995 20 6 1.9415 0.1793 -2.3793 21 6 2.4517 -0.5634 -3.5872 22 7 2.9015 -1.7909 -3.5906 23 6 3.2710 -2.1406 -4.8351 24 8 3.7269 -3.2188 -5.1683 25 7 3.0537 -1.0865 -5.6501 26 6 3.3176 -1.0195 -7.0895 27 7 2.5235 -0.0669 -4.8423 28 1 2.2603 0.8214 -5.1295 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6292 -1.7303 1.2792 33 1 1.7258 -0.1744 2.1382 34 1 4.5678 0.9758 0.8289 35 1 3.7240 0.9257 2.3954 36 1 5.2109 -0.0228 2.1546 37 1 5.9984 -1.1690 0.0610 38 1 6.0177 -1.8498 1.7055 39 1 10.5859 -4.9884 -0.6110 40 1 2.9599 -1.0319 -1.0624 41 1 0.9054 0.4747 -2.5448 42 1 2.5509 1.0680 -2.2155 43 1 4.3330 -0.6599 -7.2565 44 1 3.2077 -2.0125 -7.5256 45 1 2.6087 -0.3365 -7.5575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571378088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:07 Heat of formation + Delta-G solvation = 8.067045 kcal Electronic energy + Delta-G solvation = -28408.096848 eV Core-core repulsion = 24396.126446 eV Total energy + Delta-G solvation = -4011.970402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.32963 -41.01364 -38.69943 -37.99342 -36.21109 -35.12996 -34.68683 -32.90870 -32.24749 -30.81822 -28.51162 -28.15806 -27.85453 -26.61328 -26.04355 -22.83942 -22.36172 -21.43779 -20.57502 -19.59703 -19.42868 -18.01976 -17.87897 -17.55293 -17.24981 -17.11137 -16.99673 -16.60913 -16.25456 -15.87404 -15.61892 -15.30675 -14.95813 -14.56116 -14.44178 -14.35166 -14.21106 -13.72364 -13.53263 -13.51810 -13.35542 -13.25962 -13.17500 -13.05620 -12.98422 -12.55084 -12.51813 -12.34387 -12.19722 -11.92093 -11.85030 -11.20245 -11.14232 -10.94734 -10.79316 -10.45828 -9.67539 -9.61873 -9.24788 -8.97013 -8.54701 -6.21534 0.32088 0.35778 0.97664 1.28759 1.44569 1.52972 1.65146 2.16229 2.22906 2.29927 2.48585 2.72215 2.84579 3.08879 3.44004 3.70182 3.91669 3.96596 4.05603 4.18086 4.30032 4.32432 4.35348 4.39034 4.43994 4.50602 4.57203 4.59190 4.62959 4.74562 4.80882 4.93678 4.99200 5.01722 5.09076 5.18335 5.52791 5.68768 5.70004 6.08042 6.08404 6.25549 6.33347 6.39043 6.92863 6.94636 7.10475 7.23973 8.57771 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.004527 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.164134 B = 6183.152662 C = 8969.806430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 H 0.077 0.923 4 C 0.109 3.891 5 N -0.614 5.614 6 C 0.070 3.930 7 C 0.525 3.475 8 O -0.538 6.538 9 C -0.103 4.103 10 S -0.185 6.185 11 C -0.522 4.522 12 H 0.066 0.934 13 C 0.054 3.946 14 N -0.914 5.914 15 Si 0.903 3.097 16 H -0.277 1.277 17 H -0.251 1.251 18 H -0.240 1.240 19 N -0.696 5.696 20 C 0.130 3.870 21 C 0.399 3.601 22 N -0.601 5.601 23 C 0.610 3.390 24 O -0.600 6.600 25 N -0.444 5.444 26 C 0.103 3.897 27 N -0.465 5.465 28 H 0.471 0.529 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.277 0.723 40 H 0.343 0.657 41 H 0.149 0.851 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.318 25.415 -3.844 34.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 H 0.095 0.905 4 C -0.013 4.013 5 N -0.349 5.349 6 C -0.072 4.072 7 C 0.312 3.688 8 O -0.414 6.414 9 C -0.254 4.254 10 S 0.042 5.958 11 C -0.670 4.670 12 H 0.084 0.916 13 C -0.152 4.152 14 N -0.552 5.552 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.175 1.175 18 H -0.164 1.164 19 N -0.332 5.332 20 C -0.002 4.002 21 C 0.124 3.876 22 N -0.351 5.351 23 C 0.308 3.692 24 O -0.477 6.477 25 N -0.273 5.273 26 C -0.037 4.037 27 N -0.199 5.199 28 H 0.324 0.676 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.228 22.339 -4.494 33.260 hybrid contribution 2.107 1.144 -0.816 2.533 sum -22.120 23.483 -5.310 32.695 Atomic orbital electron populations 1.21763 0.92328 1.02003 1.03267 1.22037 0.97078 0.96380 0.88040 0.90543 1.21921 0.77836 1.02449 0.99091 1.47870 1.07574 1.15654 1.63792 1.22102 0.96483 0.87724 1.00850 1.19947 0.88689 0.82969 0.77231 1.90787 1.66364 1.37597 1.46687 1.23261 0.96080 1.00631 1.05470 1.85077 1.04798 1.21127 1.84794 1.22462 0.90263 1.05594 1.48687 0.91558 1.25368 0.94605 1.00884 0.94342 1.69988 1.03495 1.34876 1.46890 0.86037 0.80806 0.80783 0.79767 1.20222 1.17480 1.16373 1.60210 1.31681 1.38267 1.03068 1.20990 1.04200 0.92244 0.82721 1.24577 0.87090 0.89189 0.86698 1.71925 1.27840 1.14972 1.20393 1.18681 0.82073 0.84344 0.84106 1.90900 1.52904 1.24220 1.79650 1.49525 1.61213 1.08090 1.08439 1.22177 1.03765 1.05550 0.72209 1.44681 1.59558 1.11624 1.04079 0.67622 0.89958 0.90893 0.93992 0.91852 0.86046 0.91465 0.87082 0.91616 0.87901 0.87136 0.91394 0.83627 0.83378 0.87862 0.90264 0.89742 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.34 71.98 0.67 -0.61 16 2 C 0.07 0.98 2.92 44.92 0.13 1.11 16 3 H 0.08 0.53 7.91 -2.39 -0.02 0.51 16 4 C 0.11 1.92 5.22 86.38 0.45 2.37 16 5 N -0.61 -13.83 2.52 -846.77 -2.14 -15.97 16 6 C 0.07 0.97 10.19 127.77 1.30 2.27 16 7 C 0.52 18.88 6.13 87.66 0.54 19.42 16 8 O -0.54 -24.60 14.66 -3.04 -0.04 -24.64 16 9 C -0.10 -4.19 4.78 71.24 0.34 -3.85 16 10 S -0.18 -10.29 18.55 -56.49 -1.05 -11.34 16 11 C -0.52 -32.38 10.04 67.95 0.68 -31.70 16 12 H 0.07 4.24 8.03 -2.91 -0.02 4.21 16 13 C 0.05 3.37 5.50 84.86 0.47 3.83 16 14 N -0.91 -58.38 13.97 21.65 0.30 -58.08 16 15 Si 0.90 49.97 27.74 68.60 1.90 51.88 16 16 H -0.28 -15.71 7.11 99.48 0.71 -15.00 16 17 H -0.25 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.24 -13.41 6.74 99.48 0.67 -12.74 16 19 N -0.70 -15.12 6.04 -495.61 -2.99 -18.11 16 20 C 0.13 1.57 6.11 85.56 0.52 2.10 16 21 C 0.40 8.64 7.97 138.02 1.10 9.74 16 22 N -0.60 -22.83 10.69 -316.05 -3.38 -26.21 16 23 C 0.61 24.59 8.97 179.09 1.61 26.20 16 24 O -0.60 -31.13 17.91 -4.41 -0.08 -31.21 16 25 N -0.44 -10.78 4.06 -500.00 -2.03 -12.80 16 26 C 0.10 1.51 11.46 127.77 1.46 2.97 16 27 N -0.46 -6.55 7.36 -50.37 -0.37 -6.92 16 28 H 0.47 0.78 8.96 -213.08 -1.91 -1.13 16 29 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.07 0.43 7.09 -2.38 -0.02 0.42 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.62 7.24 -2.39 -0.02 1.60 16 33 H 0.12 1.13 7.96 -2.39 -0.02 1.11 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.70 7.91 -2.39 -0.02 0.68 16 36 H 0.07 1.07 6.64 -2.39 -0.02 1.05 16 37 H 0.10 3.90 8.11 -2.40 -0.02 3.88 16 38 H 0.11 4.08 7.40 -2.39 -0.02 4.06 16 39 H 0.28 16.39 8.31 -92.71 -0.77 15.62 16 40 H 0.34 10.42 5.31 -89.69 -0.48 9.94 16 41 H 0.15 0.62 7.04 -2.39 -0.02 0.60 16 42 H 0.10 0.52 8.07 -2.39 -0.02 0.50 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.54 8.12 -2.38 -0.02 1.52 16 45 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -109.38 387.89 -1.99 -111.37 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -1.39 Total: 8.20 kcal Atomic # 6 Polarization: 24.56 SS G_CDS: 9.28 Total: 33.84 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -10.60 Total: -138.09 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.12 Total: -55.85 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.90 Total: 51.88 kcal Atomic # 16 Polarization: -10.29 SS G_CDS: -1.05 Total: -11.34 kcal Total: -109.38 -1.99 -111.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571378088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.438 kcal (2) G-P(sol) polarization free energy of solvation -109.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds