Wall clock time and date at job start Wed Apr 1 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.96271 * 2 1 4 4 C 1.33238 * 109.82505 * 180.19275 * 3 2 1 5 5 C 1.50707 * 125.52279 * 179.85745 * 4 3 2 6 6 H 1.09003 * 109.46635 * 344.71030 * 5 4 3 7 7 C 1.52992 * 109.47627 * 104.71303 * 5 4 3 8 8 N 1.46907 * 109.47042 * 224.71902 * 5 4 3 9 9 C 1.46891 * 111.00158 * 86.64718 * 8 5 4 10 10 H 1.08998 * 109.47822 * 323.64163 * 9 8 5 11 11 C 1.53004 * 109.47360 * 83.64369 * 9 8 5 12 12 O 1.42901 * 109.46950 * 64.66450 * 11 9 8 13 13 C 1.53005 * 109.47135 * 203.64273 * 9 8 5 14 14 N 1.46492 * 109.47094 * 54.99855 * 13 9 8 15 15 C 1.34777 * 120.00252 * 180.02562 * 14 13 9 16 16 O 1.21292 * 119.99541 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00503 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47418 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99923 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00580 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99952 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99608 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47169 * 89.99804 * 23 21 19 25 25 H 1.48501 * 109.47066 * 209.99581 * 23 21 19 26 26 H 1.48502 * 109.46947 * 329.99933 * 23 21 19 27 27 N 1.30710 * 108.95110 * 359.58918 * 4 3 2 28 28 N 1.34431 * 125.96209 * 179.74992 * 2 1 3 29 29 H 0.97000 * 126.82384 * 359.92862 * 28 2 1 30 30 H 1.08998 * 109.47159 * 270.27524 * 1 2 3 31 31 H 1.08997 * 109.46724 * 30.27187 * 1 2 3 32 32 H 1.09002 * 109.47103 * 150.27292 * 1 2 3 33 33 H 1.08993 * 109.47241 * 184.84789 * 7 5 4 34 34 H 1.08998 * 109.46906 * 304.85126 * 7 5 4 35 35 H 1.09000 * 109.47048 * 64.84504 * 7 5 4 36 36 H 1.00892 * 110.99849 * 210.60616 * 8 5 4 37 37 H 1.08991 * 109.47222 * 184.66731 * 11 9 8 38 38 H 1.09002 * 109.46576 * 304.66429 * 11 9 8 39 39 H 0.96698 * 113.99408 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.47235 * 175.00537 * 13 9 8 41 41 H 1.09004 * 109.46590 * 294.99998 * 13 9 8 42 42 H 0.96999 * 120.00413 * 0.02562 * 14 13 9 43 43 H 1.08999 * 109.47273 * 300.00069 * 17 15 14 44 44 H 1.09004 * 109.47397 * 60.00048 * 17 15 14 45 45 H 0.97008 * 119.99578 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5552 0.6887 -0.0042 5 6 4.7373 1.6235 -0.0086 6 1 4.4063 2.6263 -0.2789 7 6 5.3694 1.6532 1.3843 8 7 5.7286 1.1550 -0.9864 9 6 5.4353 1.6803 -2.3264 10 1 4.3560 1.7184 -2.4738 11 6 6.0183 3.0886 -2.4610 12 8 7.4433 3.0243 -2.3763 13 6 6.0621 0.7661 -3.3811 14 7 5.5945 -0.6072 -3.1769 15 6 6.0186 -1.5919 -3.9935 16 8 6.7871 -1.3410 -4.8978 17 6 5.5373 -3.0044 -3.7838 18 16 6.2788 -4.0861 -5.0314 19 6 5.5655 -5.6276 -4.5628 20 1 4.8907 -5.6767 -3.7210 21 6 5.8708 -6.7788 -5.2756 22 7 6.6928 -6.7188 -6.3019 23 14 5.1141 -8.4129 -4.7793 24 1 3.8309 -8.6041 -5.5021 25 1 6.0464 -9.5157 -5.1257 26 1 4.8633 -8.4180 -3.3156 27 7 3.6194 -0.6168 0.0019 28 7 2.2965 -1.0881 0.0047 29 1 2.0094 -2.0146 0.0098 30 1 -0.3633 0.0049 1.0276 31 1 -0.3633 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5096 33 1 6.1697 2.3928 1.4044 34 1 4.6115 1.9178 2.1216 35 1 5.7772 0.6701 1.6192 36 1 6.6640 1.3999 -0.6986 37 1 5.7302 3.5106 -3.4237 38 1 5.6346 3.7187 -1.6586 39 1 7.8810 3.8831 -2.4535 40 1 5.7707 1.1051 -4.3752 41 1 7.1478 0.7976 -3.2902 42 1 4.9797 -0.8078 -2.4540 43 1 5.8279 -3.3435 -2.7895 44 1 4.4516 -3.0358 -3.8755 45 1 6.9065 -7.5235 -6.7998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571422501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:10 Heat of formation + Delta-G solvation = -4.168767 kcal Electronic energy + Delta-G solvation = -27785.670027 eV Core-core repulsion = 23773.169041 eV Total energy + Delta-G solvation = -4012.500986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.36536 -39.32688 -38.26079 -36.31668 -34.50792 -32.90431 -32.56736 -32.36532 -31.46166 -29.29360 -28.21040 -27.87361 -25.61943 -25.15821 -24.42259 -21.44304 -21.03495 -20.17918 -20.00444 -18.15264 -17.89170 -17.68282 -16.34253 -16.15282 -16.09973 -15.65641 -15.36475 -14.83254 -14.76239 -14.68159 -14.51276 -14.25668 -13.82043 -13.62494 -13.42899 -13.25833 -13.14440 -12.81991 -12.51372 -12.35180 -12.26132 -12.02655 -11.93411 -11.82869 -11.48271 -11.31541 -11.02068 -10.95877 -10.71320 -10.40252 -10.28992 -10.24162 -9.74179 -9.66215 -9.19650 -9.00869 -8.78404 -8.54666 -8.13179 -6.40678 -6.15291 -3.84315 1.40068 2.43668 2.59704 3.16842 3.25204 3.31472 3.33164 3.38548 3.46210 3.75420 3.95053 4.04976 4.26823 4.32625 4.52886 4.61543 4.70500 4.79094 4.81880 4.97609 5.03900 5.14546 5.18110 5.19402 5.25141 5.32682 5.38396 5.39962 5.48066 5.74001 5.81166 5.87369 6.02198 6.03919 6.13815 6.20347 6.28875 6.61008 6.84025 6.91758 7.13986 7.26229 7.65448 7.90961 8.04997 8.41546 8.87513 9.29664 10.92200 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.003002 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.434849 B = 9323.844555 C =11464.087763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.278 3.722 3 N -0.543 5.543 4 C 0.229 3.771 5 C 0.178 3.822 6 H 0.073 0.927 7 C -0.150 4.150 8 N -0.668 5.668 9 C 0.079 3.921 10 H 0.092 0.908 11 C 0.049 3.951 12 O -0.564 6.564 13 C 0.138 3.862 14 N -0.724 5.724 15 C 0.529 3.471 16 O -0.525 6.525 17 C -0.149 4.149 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.273 1.273 27 N -0.277 5.277 28 N -0.484 5.484 29 H 0.441 0.559 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.364 0.636 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.381 0.619 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.403 0.597 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 22.230 16.871 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 N -0.273 5.273 4 C -0.055 4.055 5 C 0.066 3.934 6 H 0.091 0.909 7 C -0.208 4.208 8 N -0.302 5.302 9 C -0.031 4.031 10 H 0.110 0.890 11 C -0.032 4.032 12 O -0.370 6.370 13 C 0.013 3.987 14 N -0.379 5.379 15 C 0.315 3.685 16 O -0.401 6.401 17 C -0.299 4.299 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.198 1.198 27 N -0.105 5.105 28 N -0.202 5.202 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.187 0.813 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.228 0.772 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.238 0.762 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.316 21.299 15.188 27.769 hybrid contribution -1.816 -0.575 1.737 2.578 sum -11.132 20.724 16.925 28.980 Atomic orbital electron populations 1.20387 0.83823 1.05086 1.04420 1.24336 0.96549 0.83027 0.96135 1.70307 1.01368 1.29684 1.25986 1.24103 0.92506 0.90387 0.98485 1.19611 0.87286 0.92948 0.93577 0.90949 1.21937 1.00907 1.03566 0.94440 1.60169 1.06399 1.63134 1.00541 1.21999 0.99850 0.91298 0.90001 0.89035 1.22800 0.82029 0.97742 1.00594 1.86499 1.18353 1.35521 1.96615 1.21094 1.00166 0.81277 0.96167 1.45822 1.50318 1.07270 1.34464 1.20239 0.80543 0.86402 0.81327 1.90684 1.34361 1.83426 1.31609 1.23484 1.04237 0.95607 1.06619 1.85357 1.61313 1.00044 1.36646 1.22877 1.32756 0.93719 1.18836 0.91090 1.24983 0.95066 0.98939 0.94633 1.70029 1.32898 1.29307 1.18096 0.86184 0.78857 0.81726 0.78813 1.20355 1.20758 1.19752 1.78186 0.95507 1.12214 1.24610 1.48190 1.04681 1.10189 1.57144 0.71297 0.89135 0.88478 0.89741 0.91384 0.91564 0.90831 0.81346 0.92624 0.93245 0.77159 0.91822 0.90456 0.76163 0.89346 0.89881 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.28 2.46 8.24 -155.69 -1.28 1.17 16 3 N -0.54 -5.99 11.19 -8.16 -0.09 -6.08 16 4 C 0.23 2.60 6.73 -156.86 -1.06 1.54 16 5 C 0.18 1.62 2.95 -68.86 -0.20 1.41 16 6 H 0.07 0.59 7.00 -51.93 -0.36 0.23 16 7 C -0.15 -1.13 9.14 37.15 0.34 -0.80 16 8 N -0.67 -6.64 5.47 -100.95 -0.55 -7.19 16 9 C 0.08 0.79 2.39 -67.71 -0.16 0.63 16 10 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 11 C 0.05 0.35 6.69 37.16 0.25 0.60 16 12 O -0.56 -4.45 12.06 -35.23 -0.42 -4.87 16 13 C 0.14 1.93 5.26 -4.04 -0.02 1.91 16 14 N -0.72 -12.00 5.39 -60.30 -0.32 -12.32 16 15 C 0.53 11.25 7.85 -10.99 -0.09 11.17 16 16 O -0.53 -13.09 15.86 5.55 0.09 -13.00 16 17 C -0.15 -3.34 6.16 36.00 0.22 -3.12 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.76 9.50 30.94 0.29 -15.47 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.83 13.22 55.49 0.73 -26.10 16 23 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 N -0.28 -3.40 12.78 32.42 0.41 -2.99 16 28 N -0.48 -4.57 7.45 32.62 0.24 -4.32 16 29 H 0.44 2.98 8.96 -182.34 -1.63 1.34 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.36 3.51 7.55 -39.30 -0.30 3.21 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.28 7.30 -51.93 -0.38 -0.10 16 39 H 0.38 1.36 9.12 45.56 0.42 1.78 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.22 7.40 -51.93 -0.38 0.83 16 42 H 0.40 6.28 8.14 -40.82 -0.33 5.95 16 43 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 44 H 0.08 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -39.42 396.47 -9.75 -49.17 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.15 Total: 7.66 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.42 Total: 1.14 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.42 Total: -59.01 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.34 Total: -17.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.42 -9.75 -49.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571422501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.999 kcal (2) G-P(sol) polarization free energy of solvation -39.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds