Wall clock time and date at job start Wed Apr 1 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46503 * 119.99757 * 2 1 4 4 C 1.52991 * 109.47316 * 270.00230 * 3 2 1 5 5 H 1.09000 * 109.47202 * 305.00102 * 4 3 2 6 6 O 1.42899 * 109.47240 * 65.00225 * 4 3 2 7 7 C 1.52997 * 109.47332 * 185.00205 * 4 3 2 8 8 N 1.46903 * 109.47518 * 179.97438 * 7 4 3 9 9 C 1.46900 * 111.00046 * 179.97438 * 8 7 4 10 10 C 1.50699 * 109.47033 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99856 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00381 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00252 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00106 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99756 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00330 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47275 * 89.99828 * 17 15 13 19 19 H 1.48497 * 109.47541 * 210.00103 * 17 15 13 20 20 H 1.48508 * 109.46978 * 329.99855 * 17 15 13 21 21 C 1.34774 * 119.99844 * 180.02562 * 2 1 3 22 22 O 1.21732 * 119.99555 * 177.47331 * 21 2 1 23 23 C 1.46372 * 119.99918 * 357.74497 * 21 2 1 24 24 C 1.33975 * 119.23348 * 329.02620 * 23 21 2 25 25 O 1.34999 * 121.68993 * 180.02562 * 24 23 21 26 26 C 1.43242 * 116.83466 * 343.36050 * 25 24 23 27 27 C 1.53549 * 108.08977 * 45.23350 * 26 25 24 28 28 O 1.36217 * 119.23370 * 149.30418 * 23 21 2 29 29 H 1.09002 * 109.46578 * 276.19548 * 1 2 3 30 30 H 1.08994 * 109.47168 * 36.18996 * 1 2 3 31 31 H 1.08998 * 109.47009 * 156.19738 * 1 2 3 32 32 H 1.09003 * 109.46870 * 30.00631 * 3 2 1 33 33 H 1.09001 * 109.46593 * 150.00136 * 3 2 1 34 34 H 0.96698 * 114.00022 * 59.99911 * 6 4 3 35 35 H 1.09000 * 109.47001 * 300.00632 * 7 4 3 36 36 H 1.09011 * 109.47019 * 60.00026 * 7 4 3 37 37 H 1.00905 * 110.99549 * 56.04759 * 8 7 4 38 38 H 1.08994 * 109.47127 * 300.00336 * 9 8 7 39 39 H 1.08999 * 109.46669 * 60.00477 * 9 8 7 40 40 H 0.97005 * 119.99729 * 359.97438 * 12 10 9 41 41 H 0.97006 * 120.00153 * 180.02562 * 16 15 13 42 42 H 1.08002 * 119.15973 * 0.37486 * 24 23 21 43 43 H 1.09004 * 109.73956 * 285.58746 * 26 25 24 44 44 H 1.08997 * 109.74597 * 164.88420 * 26 25 24 45 45 H 1.09000 * 109.75808 * 182.22221 * 27 26 25 46 46 H 1.08995 * 109.79699 * 61.49707 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 2.9642 0.9133 -1.9815 6 8 1.2060 1.9937 -2.0813 7 6 3.3238 2.9682 -1.4442 8 7 3.5691 3.3920 -2.8292 9 6 4.4039 4.6001 -2.8701 10 6 4.6330 5.0041 -4.3037 11 8 4.1482 4.3502 -5.2029 12 7 5.3767 6.0919 -4.5867 13 6 5.5847 6.4597 -5.8909 14 1 5.1530 5.8775 -6.6916 15 6 6.3509 7.5815 -6.1826 16 7 6.8758 8.2902 -5.2083 17 14 6.6350 8.0823 -7.9596 18 1 5.5595 9.0115 -8.3900 19 1 7.9512 8.7594 -8.0788 20 1 6.6200 6.8740 -8.8229 21 6 2.1389 -1.1672 -0.0005 22 8 3.3554 -1.1676 -0.0470 23 6 1.4079 -2.4343 0.0488 24 6 0.2338 -2.4877 0.6920 25 8 -0.4815 -3.6301 0.7686 26 6 -0.1373 -4.6716 -0.1526 27 6 1.3925 -4.8015 -0.1755 28 8 1.9398 -3.5332 -0.5555 29 1 -0.3632 0.1109 1.0217 30 1 -0.3633 0.8293 -0.6068 31 1 -0.3633 -0.9402 -0.4147 32 1 1.6084 2.0284 0.5140 33 1 3.1500 1.1384 0.5138 34 1 0.6955 2.6951 -1.6541 35 1 2.8121 3.7654 -0.9051 36 1 4.2746 2.7522 -0.9569 37 1 2.7007 3.5361 -3.3224 38 1 3.8991 5.4085 -2.3414 39 1 5.3620 4.3959 -2.3922 40 1 5.7641 6.6150 -3.8676 41 1 7.4104 9.0736 -5.4120 42 1 -0.1530 -1.5927 1.1564 43 1 -0.5000 -4.4169 -1.1485 44 1 -0.5818 -5.6123 0.1722 45 1 1.6870 -5.5617 -0.8989 46 1 1.7545 -5.0760 0.8153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571573478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:08 Heat of formation + Delta-G solvation = -145.709199 kcal Electronic energy + Delta-G solvation = -29632.673790 eV Core-core repulsion = 25138.989528 eV Total energy + Delta-G solvation = -4493.684262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66531 -40.03786 -38.44334 -37.83780 -37.35567 -35.77339 -34.70136 -33.73921 -32.82397 -31.20832 -30.73857 -29.22475 -27.77766 -26.98620 -25.60073 -24.85337 -23.42294 -21.83890 -21.33057 -20.05929 -19.22160 -18.77286 -17.94948 -17.86658 -17.20154 -17.05526 -16.52153 -16.10824 -15.81848 -15.67564 -15.39272 -15.23154 -14.78031 -14.71234 -14.52983 -14.43809 -14.34887 -13.88430 -13.71700 -13.41224 -13.32334 -12.84493 -12.76011 -12.65449 -12.37676 -11.98167 -11.73936 -11.55780 -11.48586 -11.47608 -11.19413 -11.11676 -10.99512 -10.56649 -10.36374 -10.19554 -10.16894 -9.47501 -8.98389 -8.55425 -8.40466 -8.01803 -7.92079 -6.38408 -3.79000 0.95416 2.08390 2.66829 2.76751 3.15883 3.20559 3.28922 3.35584 3.80997 3.94519 4.01867 4.13481 4.23141 4.31534 4.35657 4.39340 4.55386 4.64512 4.77864 4.80570 4.83477 4.95406 4.99254 5.00947 5.11362 5.26081 5.29833 5.31429 5.36619 5.41442 5.65054 5.78714 5.93264 6.00756 6.11586 6.28078 6.30184 6.79316 6.96574 7.22545 7.49140 7.58642 7.74684 7.78819 8.10160 8.65264 9.21584 9.58031 10.09995 10.79405 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.027753 B = 0.001641 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.656343 B =17059.118297 C =17340.623975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.089 3.911 4 C 0.094 3.906 5 H 0.114 0.886 6 O -0.551 6.551 7 C 0.032 3.968 8 N -0.663 5.663 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.575 3.425 22 O -0.516 6.516 23 C -0.069 4.069 24 C -0.014 4.014 25 O -0.302 6.302 26 C 0.013 3.987 27 C 0.018 3.982 28 O -0.286 6.286 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.366 0.634 35 H 0.029 0.971 36 H 0.082 0.918 37 H 0.355 0.645 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.195 0.805 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.402 -20.551 18.931 32.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.334 5.334 3 C -0.034 4.034 4 C 0.033 3.967 5 H 0.132 0.868 6 O -0.355 6.355 7 C -0.099 4.099 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.363 3.637 22 O -0.392 6.392 23 C -0.117 4.117 24 C -0.079 4.079 25 O -0.214 6.214 26 C -0.063 4.063 27 C -0.058 4.058 28 O -0.199 6.199 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.212 0.788 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.211 0.789 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.219 -21.795 17.767 32.462 hybrid contribution -0.339 1.627 0.309 1.690 sum -16.558 -20.168 18.076 31.744 Atomic orbital electron populations 1.22453 0.79353 1.05172 1.01506 1.47402 1.07093 1.05178 1.73701 1.22230 0.98752 0.84259 0.98139 1.22447 0.84405 0.97573 0.92249 0.86838 1.86716 1.32421 1.59233 1.57129 1.22560 1.00197 0.95842 0.91332 1.59953 1.23089 1.34659 1.11978 1.21684 0.98616 0.91063 0.96826 1.19811 0.84357 0.83451 0.89756 1.90536 1.53714 1.54578 1.47633 1.41857 1.45305 1.24194 1.08802 1.19714 1.29538 1.09493 0.84068 0.87920 1.25259 0.96715 0.96267 0.99755 1.69616 1.34694 1.18164 1.31952 0.85850 0.77520 0.78796 0.82073 1.20460 1.20941 1.19403 1.17167 0.86870 0.82358 0.77331 1.90886 1.13015 1.86838 1.48483 1.20302 0.94095 0.89722 1.07619 1.23960 0.90447 0.90856 1.02643 1.86109 1.56094 1.22881 1.56313 1.23755 0.96268 0.91771 0.94464 1.23683 0.93581 0.85182 1.03307 1.86445 1.59561 1.12199 1.61732 0.92000 0.89651 0.89623 0.89628 0.88332 0.78772 0.95287 0.89968 0.82400 0.94005 0.89615 0.77482 0.91923 0.78902 0.89893 0.86022 0.85897 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 8.58 59.85 0.51 0.81 16 2 N -0.60 -5.32 2.84 -183.23 -0.52 -5.84 16 3 C 0.09 0.75 5.07 -4.04 -0.02 0.73 16 4 C 0.09 1.05 3.48 -26.74 -0.09 0.96 16 5 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 6 O -0.55 -5.89 11.41 -35.23 -0.40 -6.29 16 7 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16 8 N -0.66 -11.28 6.13 -115.06 -0.70 -11.98 16 9 C 0.05 0.93 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.79 7.82 -10.99 -0.09 10.70 16 11 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 12 N -0.56 -14.68 5.29 -10.97 -0.06 -14.74 16 13 C -0.30 -8.53 9.68 -14.94 -0.14 -8.67 16 14 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 17 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.57 7.07 7.46 -12.99 -0.10 6.97 16 22 O -0.52 -8.52 16.64 -6.19 -0.10 -8.62 16 23 C -0.07 -0.72 6.14 -37.81 -0.23 -0.96 16 24 C -0.01 -0.10 8.45 29.23 0.25 0.15 16 25 O -0.30 -2.13 10.47 -30.82 -0.32 -2.45 16 26 C 0.01 0.06 7.30 37.44 0.27 0.34 16 27 C 0.02 0.12 7.31 37.44 0.27 0.39 16 28 O -0.29 -3.27 10.41 -44.07 -0.46 -3.73 16 29 H 0.06 0.16 7.22 -51.93 -0.37 -0.21 16 30 H 0.08 0.40 7.03 -51.93 -0.36 0.04 16 31 H 0.09 0.46 5.16 -51.93 -0.27 0.19 16 32 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.10 0.94 7.46 -51.93 -0.39 0.55 16 34 H 0.37 2.38 9.05 45.56 0.41 2.79 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 37 H 0.36 6.34 7.82 -39.29 -0.31 6.03 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.19 0.92 4.67 -52.49 -0.24 0.68 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -38.75 384.34 -6.09 -44.84 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.59 Total: 13.98 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 0.49 Total: 13.16 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.56 Total: -56.74 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.20 Total: -37.46 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.75 -6.09 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571573478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.866 kcal (2) G-P(sol) polarization free energy of solvation -38.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds