Wall clock time and date at job start Wed Apr 1 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46503 * 119.99757 * 2 1 4 4 C 1.52991 * 109.47316 * 270.00230 * 3 2 1 5 5 H 1.09000 * 109.47202 * 305.00102 * 4 3 2 6 6 O 1.42899 * 109.47240 * 65.00225 * 4 3 2 7 7 C 1.52997 * 109.47332 * 185.00205 * 4 3 2 8 8 N 1.46903 * 109.47518 * 179.97438 * 7 4 3 9 9 C 1.46900 * 111.00046 * 179.97438 * 8 7 4 10 10 C 1.50699 * 109.47033 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99856 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00381 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00252 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00106 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99756 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00330 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47275 * 89.99828 * 17 15 13 19 19 H 1.48497 * 109.47541 * 210.00103 * 17 15 13 20 20 H 1.48508 * 109.46978 * 329.99855 * 17 15 13 21 21 C 1.34774 * 119.99844 * 180.02562 * 2 1 3 22 22 O 1.21732 * 119.99555 * 177.47331 * 21 2 1 23 23 C 1.46372 * 119.99918 * 357.74497 * 21 2 1 24 24 C 1.33975 * 119.23348 * 329.02620 * 23 21 2 25 25 O 1.34999 * 121.68993 * 180.02562 * 24 23 21 26 26 C 1.43242 * 116.83466 * 343.36050 * 25 24 23 27 27 C 1.53549 * 108.08977 * 45.23350 * 26 25 24 28 28 O 1.36217 * 119.23370 * 149.30418 * 23 21 2 29 29 H 1.09002 * 109.46578 * 276.19548 * 1 2 3 30 30 H 1.08994 * 109.47168 * 36.18996 * 1 2 3 31 31 H 1.08998 * 109.47009 * 156.19738 * 1 2 3 32 32 H 1.09003 * 109.46870 * 30.00631 * 3 2 1 33 33 H 1.09001 * 109.46593 * 150.00136 * 3 2 1 34 34 H 0.96698 * 114.00022 * 59.99911 * 6 4 3 35 35 H 1.09000 * 109.47001 * 300.00632 * 7 4 3 36 36 H 1.09011 * 109.47019 * 60.00026 * 7 4 3 37 37 H 1.00905 * 110.99549 * 56.04759 * 8 7 4 38 38 H 1.08994 * 109.47127 * 300.00336 * 9 8 7 39 39 H 1.08999 * 109.46669 * 60.00477 * 9 8 7 40 40 H 0.97005 * 119.99729 * 359.97438 * 12 10 9 41 41 H 0.97006 * 120.00153 * 180.02562 * 16 15 13 42 42 H 1.08002 * 119.15973 * 0.37486 * 24 23 21 43 43 H 1.09004 * 109.73956 * 285.58746 * 26 25 24 44 44 H 1.08997 * 109.74597 * 164.88420 * 26 25 24 45 45 H 1.09000 * 109.75808 * 182.22221 * 27 26 25 46 46 H 1.08995 * 109.79699 * 61.49707 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 2.9642 0.9133 -1.9815 6 8 1.2060 1.9937 -2.0813 7 6 3.3238 2.9682 -1.4442 8 7 3.5691 3.3920 -2.8292 9 6 4.4039 4.6001 -2.8701 10 6 4.6330 5.0041 -4.3037 11 8 4.1482 4.3502 -5.2029 12 7 5.3767 6.0919 -4.5867 13 6 5.5847 6.4597 -5.8909 14 1 5.1530 5.8775 -6.6916 15 6 6.3509 7.5815 -6.1826 16 7 6.8758 8.2902 -5.2083 17 14 6.6350 8.0823 -7.9596 18 1 5.5595 9.0115 -8.3900 19 1 7.9512 8.7594 -8.0788 20 1 6.6200 6.8740 -8.8229 21 6 2.1389 -1.1672 -0.0005 22 8 3.3554 -1.1676 -0.0470 23 6 1.4079 -2.4343 0.0488 24 6 0.2338 -2.4877 0.6920 25 8 -0.4815 -3.6301 0.7686 26 6 -0.1373 -4.6716 -0.1526 27 6 1.3925 -4.8015 -0.1755 28 8 1.9398 -3.5332 -0.5555 29 1 -0.3632 0.1109 1.0217 30 1 -0.3633 0.8293 -0.6068 31 1 -0.3633 -0.9402 -0.4147 32 1 1.6084 2.0284 0.5140 33 1 3.1500 1.1384 0.5138 34 1 0.6955 2.6951 -1.6541 35 1 2.8121 3.7654 -0.9051 36 1 4.2746 2.7522 -0.9569 37 1 2.7007 3.5361 -3.3224 38 1 3.8991 5.4085 -2.3414 39 1 5.3620 4.3959 -2.3922 40 1 5.7641 6.6150 -3.8676 41 1 7.4104 9.0736 -5.4120 42 1 -0.1530 -1.5927 1.1564 43 1 -0.5000 -4.4169 -1.1485 44 1 -0.5818 -5.6123 0.1722 45 1 1.6870 -5.5617 -0.8989 46 1 1.7545 -5.0760 0.8153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571573478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:07 Heat of formation + Delta-G solvation = -180.660136 kcal Electronic energy + Delta-G solvation = -29634.189377 eV Core-core repulsion = 25138.989528 eV Total energy + Delta-G solvation = -4495.199849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28664 -40.78959 -40.17631 -38.91051 -38.03356 -36.66570 -36.14872 -35.54536 -33.45021 -33.27358 -31.54581 -29.98431 -28.69027 -27.96074 -26.70568 -25.92707 -24.74579 -22.78327 -21.99583 -21.10739 -20.67646 -19.92870 -19.37119 -18.61111 -18.24021 -17.69277 -17.57859 -17.28001 -16.83514 -16.63627 -16.50688 -16.24885 -15.93645 -15.84049 -15.68313 -15.32440 -15.15511 -15.09434 -14.94331 -14.58101 -14.27753 -14.10389 -13.78397 -13.48254 -13.24534 -13.21503 -13.03329 -12.89492 -12.73786 -12.55507 -12.43181 -12.13176 -12.11940 -11.95164 -11.70477 -11.52159 -11.41111 -11.01624 -10.37181 -10.02809 -9.70947 -9.30203 -9.17951 -8.47724 -5.96678 0.28036 1.37314 1.40982 1.43616 1.54181 1.99059 2.03685 2.17271 2.28575 2.58586 2.90571 3.19229 3.38147 3.43227 3.50102 3.58845 3.86785 3.90741 3.95238 4.02127 4.12711 4.20325 4.22999 4.31801 4.39100 4.44671 4.48325 4.54473 4.57893 4.60814 4.70760 4.76672 4.83142 4.93881 5.08321 5.39253 5.39908 5.73017 5.87559 6.09546 6.13144 6.35502 6.42283 6.59271 6.90057 6.99785 7.11490 7.54650 8.10708 8.69589 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.027753 B = 0.001641 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.656343 B =17059.118297 C =17340.623975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.592 5.592 3 C 0.094 3.906 4 C 0.106 3.894 5 H 0.063 0.937 6 O -0.564 6.564 7 C 0.035 3.965 8 N -0.688 5.688 9 C 0.067 3.933 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.337 4.337 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.269 1.269 19 H -0.269 1.269 20 H -0.276 1.276 21 C 0.564 3.436 22 O -0.579 6.579 23 C -0.112 4.112 24 C 0.026 3.974 25 O -0.305 6.305 26 C 0.012 3.988 27 C 0.010 3.990 28 O -0.327 6.327 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.387 0.613 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.348 0.652 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.223 0.777 43 H 0.087 0.913 44 H 0.156 0.844 45 H 0.142 0.858 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.624 -19.961 20.695 34.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.325 5.325 3 C -0.029 4.029 4 C 0.045 3.955 5 H 0.081 0.919 6 O -0.372 6.372 7 C -0.095 4.095 8 N -0.322 5.322 9 C -0.066 4.066 10 C 0.222 3.778 11 O -0.513 6.513 12 N -0.209 5.209 13 C -0.466 4.466 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.194 1.194 19 H -0.194 1.194 20 H -0.201 1.201 21 C 0.354 3.646 22 O -0.460 6.460 23 C -0.160 4.160 24 C -0.040 4.040 25 O -0.217 6.217 26 C -0.062 4.062 27 C -0.065 4.065 28 O -0.243 6.243 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.237 0.763 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.239 0.761 43 H 0.105 0.895 44 H 0.174 0.826 45 H 0.160 0.840 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.497 -21.181 19.585 34.268 hybrid contribution 0.227 1.371 -0.212 1.406 sum -18.269 -19.810 19.373 33.189 Atomic orbital electron populations 1.22751 0.76816 1.05520 1.04078 1.47522 1.08627 1.04330 1.71972 1.22237 0.99352 0.85126 0.96214 1.22109 0.84324 0.95769 0.93292 0.91863 1.86677 1.32220 1.60357 1.57909 1.22630 1.00962 0.97035 0.88871 1.59908 1.22895 1.34171 1.15217 1.21535 1.00152 0.92633 0.92253 1.20951 0.82550 0.82101 0.92179 1.90500 1.55106 1.55711 1.49934 1.41917 1.45886 1.24927 1.08174 1.19669 1.31469 1.10650 0.84835 0.90516 1.26045 0.95690 0.95556 1.03909 1.69670 1.34425 1.18287 1.33578 0.84917 0.78146 0.78213 0.76969 1.19384 1.19405 1.20060 1.17660 0.86453 0.83884 0.76633 1.90832 1.15544 1.87809 1.51853 1.20232 0.95669 0.89239 1.10876 1.24378 0.88710 0.91564 0.99330 1.86113 1.55769 1.23093 1.56717 1.24015 0.95232 0.92463 0.94501 1.23980 0.94672 0.83881 1.03983 1.86363 1.61310 1.13774 1.62829 0.88186 0.88561 0.89942 0.84983 0.89691 0.76308 0.91478 0.89964 0.83191 0.90854 0.88095 0.76874 0.91235 0.76132 0.89526 0.82608 0.84007 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 8.58 127.77 1.10 1.46 16 2 N -0.59 -9.91 2.84 -851.83 -2.42 -12.32 16 3 C 0.09 1.44 5.07 86.38 0.44 1.88 16 4 C 0.11 2.33 3.48 30.59 0.11 2.44 16 5 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 6 O -0.56 -11.31 11.41 -148.98 -1.70 -13.01 16 7 C 0.03 0.78 5.39 86.30 0.47 1.25 16 8 N -0.69 -23.13 6.13 -517.93 -3.17 -26.30 16 9 C 0.07 2.36 6.17 85.56 0.53 2.88 16 10 C 0.43 21.61 7.82 87.66 0.69 22.29 16 11 O -0.63 -36.67 15.78 -3.07 -0.05 -36.72 16 12 N -0.57 -30.22 5.29 -307.00 -1.62 -31.84 16 13 C -0.34 -19.69 9.68 84.04 0.81 -18.87 16 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 15 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 16 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 17 Si 0.99 43.82 29.55 68.60 2.03 45.84 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 C 0.56 14.48 7.46 86.36 0.64 15.12 16 22 O -0.58 -20.80 16.64 6.40 0.11 -20.69 16 23 C -0.11 -2.41 6.14 23.42 0.14 -2.26 16 24 C 0.03 0.34 8.45 66.85 0.56 0.91 16 25 O -0.31 -3.58 10.47 -69.20 -0.72 -4.31 16 26 C 0.01 0.10 7.30 72.17 0.53 0.62 16 27 C 0.01 0.12 7.31 72.17 0.53 0.65 16 28 O -0.33 -7.95 10.41 -73.43 -0.76 -8.71 16 29 H 0.10 0.04 7.22 -2.39 -0.02 0.02 16 30 H 0.10 0.56 7.03 -2.39 -0.02 0.55 16 31 H 0.08 0.69 5.16 -2.39 -0.01 0.68 16 32 H 0.13 0.81 8.07 -2.39 -0.02 0.79 16 33 H 0.08 1.60 7.46 -2.39 -0.02 1.58 16 34 H 0.39 3.85 9.05 -74.06 -0.67 3.18 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.35 12.41 7.82 -89.69 -0.70 11.70 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.40 19.73 7.90 -92.70 -0.73 19.00 16 41 H 0.28 14.18 8.31 -92.70 -0.77 13.40 16 42 H 0.22 1.37 4.67 -2.91 -0.01 1.35 16 43 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -90.51 384.34 -2.07 -92.58 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -1.05 Total: 37.20 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 7.01 Total: 28.17 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.93 Total: -120.36 kcal Atomic # 8 Polarization: -80.30 SS G_CDS: -3.13 Total: -83.43 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -90.51 -2.07 -92.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571573478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.080 kcal (2) G-P(sol) polarization free energy of solvation -90.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds