Wall clock time and date at job start Wed Apr 1 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30213 * 126.79305 * 2 1 4 4 O 1.20923 * 111.64864 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79752 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01454 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47370 * 89.97067 * 8 7 5 10 10 O 1.21283 * 120.00274 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99883 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99842 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47099 * 325.00523 * 12 11 9 14 14 C 1.52995 * 109.47262 * 204.99822 * 12 11 9 15 15 N 1.46510 * 109.46728 * 55.00342 * 14 12 11 16 16 C 1.36935 * 119.99838 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00390 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99251 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00367 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47247 * 59.99598 * 20 18 16 22 22 H 1.48500 * 109.47274 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46939 * 299.99394 * 20 18 16 24 24 C 1.53004 * 109.46843 * 85.00088 * 12 11 9 25 25 C 1.53000 * 109.47031 * 60.00167 * 24 12 11 26 26 C 1.53000 * 109.46823 * 179.97438 * 24 12 11 27 27 C 1.52999 * 109.47297 * 300.00041 * 24 12 11 28 28 H 1.08997 * 109.47781 * 90.01477 * 1 2 3 29 29 H 1.09000 * 109.47426 * 210.02529 * 1 2 3 30 30 H 1.09005 * 109.46928 * 330.01776 * 1 2 3 31 31 H 1.08997 * 109.47168 * 209.97514 * 8 7 5 32 32 H 1.09003 * 109.47020 * 329.96899 * 8 7 5 33 33 H 0.96999 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.08995 * 109.47478 * 174.99957 * 14 12 11 35 35 H 1.09000 * 109.47453 * 295.00949 * 14 12 11 36 36 H 0.96995 * 120.00369 * 359.97438 * 15 14 12 37 37 H 0.97006 * 119.99818 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.47660 * 59.99589 * 25 24 12 39 39 H 1.08996 * 109.47121 * 180.02562 * 25 24 12 40 40 H 1.09006 * 109.47169 * 299.99503 * 25 24 12 41 41 H 1.09000 * 109.47017 * 60.00498 * 26 24 12 42 42 H 1.09005 * 109.46494 * 180.02562 * 26 24 12 43 43 H 1.09000 * 109.47417 * 299.99894 * 26 24 12 44 44 H 1.09006 * 109.47097 * 59.99738 * 27 24 12 45 45 H 1.08996 * 109.47366 * 179.97438 * 27 24 12 46 46 H 1.09006 * 109.47051 * 300.00332 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4837 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9578 -2.5858 -0.0005 9 6 1.8270 -3.0715 1.4201 10 8 2.0338 -2.3115 2.3423 11 7 1.4792 -4.3503 1.6656 12 6 1.3526 -4.8226 3.0467 13 1 2.0987 -4.3290 3.6694 14 6 1.5724 -6.3361 3.0902 15 7 2.8636 -6.6598 2.4782 16 6 3.2779 -7.9628 2.4026 17 1 2.6531 -8.7518 2.7945 18 6 4.5015 -8.2695 1.8232 19 7 5.2631 -7.3079 1.3461 20 14 5.0671 -10.0468 1.7208 21 1 4.0878 -10.8331 0.9284 22 1 6.3970 -10.1060 1.0626 23 1 5.1660 -10.6144 3.0895 24 6 -0.0469 -4.4952 3.5713 25 6 -1.0942 -5.1881 2.6972 26 6 -0.1793 -4.9891 5.0133 27 6 -0.2668 -2.9818 3.5278 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 1.0035 -2.7027 -0.5138 32 1 2.7211 -3.1694 -0.5152 33 1 1.3135 -4.9581 0.9281 34 1 1.5664 -6.6745 4.1263 35 1 0.7744 -6.8351 2.5403 36 1 3.4245 -5.9513 2.1258 37 1 6.1180 -7.5223 0.9408 38 1 -0.9376 -6.2663 2.7281 39 1 -2.0912 -4.9545 3.0707 40 1 -1.0000 -4.8366 1.6697 41 1 0.5668 -4.4958 5.6363 42 1 -1.1766 -4.7563 5.3869 43 1 -0.0229 -6.0674 5.0439 44 1 -0.1725 -2.6303 2.5002 45 1 -1.2639 -2.7485 3.9011 46 1 0.4794 -2.4881 4.1505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571634375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:30 Heat of formation + Delta-G solvation = 23.072858 kcal Electronic energy + Delta-G solvation = -29134.716899 eV Core-core repulsion = 25089.060741 eV Total energy + Delta-G solvation = -4045.656158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.11115 -40.09299 -37.62024 -37.15734 -35.34324 -34.45666 -33.24406 -32.43496 -31.09529 -29.26011 -28.73059 -27.62506 -27.15357 -26.49487 -23.83883 -22.46779 -21.56989 -21.42261 -20.23899 -18.59733 -17.98128 -17.79476 -17.23310 -16.61617 -15.97665 -15.71410 -15.26756 -14.68233 -14.27236 -13.94331 -13.90007 -13.60444 -13.47627 -13.44337 -13.26737 -13.05106 -12.84833 -12.76668 -12.41107 -12.32382 -12.15820 -11.95686 -11.84006 -11.76527 -11.39612 -11.22901 -11.09679 -10.94737 -10.82885 -10.75301 -10.53082 -10.27969 -10.13499 -9.96809 -9.76831 -9.63704 -9.18964 -8.91828 -8.59286 -6.97868 -5.81309 -3.10625 1.04262 1.17840 1.95028 2.88881 3.39830 3.42020 3.45404 3.45972 3.61523 3.91708 4.41627 4.53408 4.70071 4.78947 4.92669 4.97761 5.07667 5.19063 5.26144 5.28890 5.45115 5.48878 5.50897 5.55479 5.56536 5.70301 5.76986 5.86830 5.89436 5.91352 6.01265 6.06595 6.10183 6.14837 6.28772 6.44201 6.44387 6.49103 6.61924 6.72214 6.95520 7.64459 7.83798 7.97096 8.36748 8.52285 9.48718 10.04831 10.40253 11.40840 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.004031 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.452721 B = 6945.198571 C = 9284.312963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 N -0.352 5.352 4 O 0.106 5.894 5 C 0.013 3.987 6 Cl 0.059 6.941 7 C -0.146 4.146 8 C -0.072 4.072 9 C 0.517 3.483 10 O -0.533 6.533 11 N -0.706 5.706 12 C 0.150 3.850 13 H 0.086 0.914 14 C 0.142 3.858 15 N -0.731 5.731 16 C -0.243 4.243 17 H 0.069 0.931 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.076 4.076 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.128 4.128 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.404 0.596 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.040 0.960 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 12.098 -3.491 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 N -0.059 5.059 4 O 0.040 5.960 5 C -0.077 4.077 6 Cl 0.087 6.913 7 C -0.152 4.152 8 C -0.112 4.112 9 C 0.303 3.697 10 O -0.410 6.410 11 N -0.357 5.357 12 C 0.046 3.954 13 H 0.104 0.896 14 C 0.014 3.986 15 N -0.376 5.376 16 C -0.374 4.374 17 H 0.087 0.913 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.078 4.078 25 C -0.198 4.198 26 C -0.199 4.199 27 C -0.185 4.185 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.239 0.761 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.504 13.695 -2.807 18.105 hybrid contribution 0.802 -1.991 -0.520 2.209 sum -10.702 11.704 -3.328 16.205 Atomic orbital electron populations 1.20196 0.85445 1.04272 1.03363 1.23197 0.98918 0.87848 1.01621 1.73891 0.88567 1.22990 1.20494 1.84881 1.22067 1.20758 1.68264 1.24608 0.91502 0.84754 1.06814 1.98501 1.27810 1.68442 1.96516 1.20084 0.90045 0.96753 1.08286 1.20012 1.04941 0.89645 0.96589 1.20115 0.76815 0.82414 0.90394 1.90712 1.49573 1.55041 1.45699 1.45882 1.69561 1.10924 1.09324 1.21260 0.95848 0.95941 0.82391 0.89612 1.21093 0.89957 0.90321 0.97235 1.42343 1.17672 1.06252 1.71295 1.19154 1.01094 0.84545 1.32586 0.91282 1.24719 0.97219 0.97314 1.01387 1.69653 1.12579 1.30594 1.45041 0.86293 0.77729 0.84661 0.77620 1.21289 1.21720 1.21291 1.20897 0.95165 0.96033 0.95677 1.21907 0.97664 1.00913 0.99309 1.21886 1.01243 1.01669 0.95070 1.21873 1.00244 0.94407 1.01984 0.89882 0.89799 0.90210 0.87260 0.86807 0.76147 0.94819 0.95385 0.78044 0.93479 0.91908 0.93272 0.92894 0.92610 0.92946 0.91902 0.93010 0.94094 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.00 0.37 -0.29 16 2 C 0.04 0.54 7.32 -82.13 -0.60 -0.06 16 3 N -0.35 -4.98 12.07 33.44 0.40 -4.58 16 4 O 0.11 1.51 11.20 17.12 0.19 1.70 16 5 C 0.01 0.18 8.12 29.82 0.24 0.43 16 6 Cl 0.06 0.79 29.23 -51.86 -1.52 -0.72 16 7 C -0.15 -1.90 4.82 -104.38 -0.50 -2.41 16 8 C -0.07 -0.83 6.10 -29.04 -0.18 -1.00 16 9 C 0.52 7.48 6.18 -10.99 -0.07 7.41 16 10 O -0.53 -9.34 13.15 5.55 0.07 -9.27 16 11 N -0.71 -10.08 3.64 -53.80 -0.20 -10.27 16 12 C 0.15 2.35 1.69 -67.93 -0.11 2.24 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 14 C 0.14 2.59 5.10 -4.04 -0.02 2.57 16 15 N -0.73 -17.24 5.43 -59.90 -0.33 -17.57 16 16 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 17 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 20 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.08 -0.98 0.62 -154.51 -0.10 -1.07 16 25 C -0.14 -1.60 7.97 37.16 0.30 -1.30 16 26 C -0.14 -1.73 8.12 37.16 0.30 -1.42 16 27 C -0.13 -1.66 7.00 37.16 0.26 -1.40 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.40 5.41 8.60 -40.82 -0.35 5.06 16 34 H 0.03 0.64 6.71 -51.93 -0.35 0.29 16 35 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 36 H 0.39 9.73 7.33 -40.82 -0.30 9.43 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 44 H 0.05 0.68 5.77 -51.93 -0.30 0.39 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.92 7.53 -51.93 -0.39 0.53 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -31.27 387.16 -7.00 -38.28 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.82 Total: 9.54 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.35 Total: -3.30 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.61 Total: -58.77 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.26 Total: -7.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -1.52 Total: -0.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.27 -7.00 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571634375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.349 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds