Wall clock time and date at job start Wed Apr 1 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46880 * 2 1 4 4 C 1.50692 * 109.47100 * 179.97438 * 3 2 1 5 5 N 1.30306 * 126.33749 * 90.03013 * 4 3 2 6 6 N 1.28521 * 110.07659 * 179.97438 * 5 4 3 7 7 C 1.31287 * 109.86092 * 359.97438 * 6 5 4 8 8 S 1.76199 * 126.48878 * 179.97438 * 7 6 5 9 9 C 1.81005 * 99.99649 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.46977 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99895 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00236 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99380 * 359.97438 * 12 10 9 14 14 H 1.07995 * 120.00467 * 322.48751 * 13 12 10 15 15 C 1.38956 * 119.99642 * 142.48382 * 13 12 10 16 16 N 1.31410 * 119.99768 * 160.73206 * 15 13 12 17 17 Si 1.86799 * 120.00130 * 340.74100 * 15 13 12 18 18 H 1.48498 * 109.47349 * 95.23321 * 17 15 13 19 19 H 1.48499 * 109.47136 * 215.23885 * 17 15 13 20 20 H 1.48504 * 109.46996 * 335.23118 * 17 15 13 21 21 C 1.46496 * 120.00184 * 179.97438 * 12 10 9 22 22 C 1.52998 * 109.46984 * 86.26577 * 21 12 10 23 23 O 1.42900 * 109.47125 * 63.56571 * 22 21 12 24 24 C 1.42896 * 114.00164 * 179.97438 * 23 22 21 25 25 N 1.36538 * 107.02686 * 359.77669 * 7 6 5 26 26 N 1.36602 * 127.14147 * 180.22862 * 25 7 6 27 27 H 1.09004 * 109.47230 * 299.99360 * 1 2 3 28 28 H 1.09000 * 109.47663 * 59.99725 * 1 2 3 29 29 H 1.09001 * 109.46684 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47499 * 119.99759 * 2 1 3 31 31 H 1.08995 * 109.47180 * 240.00946 * 2 1 3 32 32 H 1.09000 * 109.47197 * 300.00560 * 3 2 1 33 33 H 1.09004 * 109.46667 * 60.00295 * 3 2 1 34 34 H 1.09002 * 109.47215 * 299.99484 * 9 8 7 35 35 H 1.09002 * 109.47441 * 60.00060 * 9 8 7 36 36 H 0.97001 * 119.99789 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.46715 * 206.26681 * 21 12 10 38 38 H 1.08994 * 109.46993 * 326.26831 * 21 12 10 39 39 H 1.08998 * 109.47356 * 183.56547 * 22 21 12 40 40 H 1.09002 * 109.47393 * 303.56575 * 22 21 12 41 41 H 1.09002 * 109.47008 * 60.00115 * 24 23 22 42 42 H 1.09007 * 109.47361 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47530 * 299.99770 * 24 23 22 44 44 H 1.00897 * 111.00104 * 270.14590 * 26 25 7 45 45 H 1.00904 * 111.00147 * 34.09831 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3194 1.4431 -1.0487 6 7 5.5531 1.4435 -0.6883 7 6 5.6350 1.4440 0.6220 8 16 7.1141 1.4441 1.5794 9 6 8.3465 1.4426 0.2537 10 6 9.7292 1.4418 0.8531 11 8 9.8677 1.4427 2.0581 12 7 10.8118 1.4412 0.0504 13 6 10.6551 1.4407 -1.3117 14 1 9.8562 0.8713 -1.7632 15 6 11.5242 2.1731 -2.1112 16 7 11.6325 1.8941 -3.3908 17 14 12.5386 3.5539 -1.3671 18 1 13.8823 3.0388 -1.0006 19 1 12.6822 4.6515 -2.3569 20 1 11.8576 4.0691 -0.1521 21 6 12.1559 1.4410 0.6331 22 6 12.5859 0.0016 0.9227 23 8 12.6746 -0.7251 -0.3046 24 6 13.0718 -2.0885 -0.1454 25 7 4.3569 1.4489 1.1025 26 7 3.9681 1.4554 2.4120 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.6765 1.9565 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 8.2172 0.5522 -0.3616 35 1 8.2179 2.3322 -0.3630 36 1 12.2395 2.4051 -3.9488 37 1 12.8559 1.8953 -0.0681 38 1 12.1494 2.0120 1.5615 39 1 13.5589 0.0049 1.4141 40 1 11.8517 -0.4731 1.5737 41 1 12.3480 -2.6067 0.4836 42 1 13.1159 -2.5706 -1.1220 43 1 14.0549 -2.1282 0.3236 44 1 3.8654 0.5151 2.7633 45 1 4.6141 1.9845 2.9784 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629262016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:05 Heat of formation + Delta-G solvation = 9.201461 kcal Electronic energy + Delta-G solvation = -27763.359520 eV Core-core repulsion = 23751.438310 eV Total energy + Delta-G solvation = -4011.921210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.10308 -40.89424 -38.65509 -37.56630 -36.80860 -36.17883 -34.02679 -32.40565 -31.87604 -30.74020 -29.93930 -27.90706 -27.27959 -26.64571 -24.33331 -24.08155 -23.12054 -21.87113 -21.15018 -19.93523 -18.84511 -18.49720 -18.26985 -17.78339 -17.67115 -17.11258 -16.62500 -16.33532 -16.32857 -15.94814 -15.84109 -15.79054 -15.50335 -14.79627 -14.68926 -14.31176 -14.15842 -13.90710 -13.57830 -13.29883 -13.17409 -13.15557 -13.00931 -12.73241 -12.60758 -12.46978 -12.40467 -12.20380 -12.06650 -11.93846 -11.72497 -11.63367 -11.45545 -11.19244 -11.07844 -10.75937 -10.63474 -10.49255 -9.85414 -8.81679 -8.48397 -6.12390 -0.21147 0.43077 0.77153 1.13673 1.18068 1.29495 1.40621 1.57135 1.65923 2.17726 2.46775 2.87638 3.03136 3.07073 3.60779 3.80305 3.89110 4.01547 4.08841 4.09551 4.15078 4.24850 4.27694 4.36510 4.43337 4.45670 4.51568 4.53428 4.57594 4.73062 4.73554 4.83083 4.83342 4.92217 4.98248 5.23525 5.31157 5.34812 5.46009 5.52624 6.00821 6.15841 6.32712 6.36899 6.88454 7.26257 7.42506 7.57888 8.65910 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002730 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.026300 B =10253.517803 C =10656.375268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.024 4.024 4 C 0.223 3.777 5 N -0.324 5.324 6 N -0.319 5.319 7 C 0.102 3.898 8 S 0.082 5.918 9 C -0.101 4.101 10 C 0.490 3.510 11 O -0.600 6.600 12 N -0.448 5.448 13 C -0.333 4.333 14 H 0.076 0.924 15 C 0.034 3.966 16 N -0.893 5.893 17 Si 0.928 3.072 18 H -0.255 1.255 19 H -0.287 1.287 20 H -0.259 1.259 21 C 0.091 3.909 22 C 0.058 3.942 23 O -0.399 6.399 24 C 0.027 3.973 25 N -0.304 5.304 26 N -0.569 5.569 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.279 0.721 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.379 0.621 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -3.381 13.142 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.063 4.063 4 C -0.047 4.047 5 N -0.164 5.164 6 N -0.164 5.164 7 C -0.275 4.275 8 S 0.309 5.691 9 C -0.253 4.253 10 C 0.278 3.722 11 O -0.487 6.487 12 N -0.168 5.168 13 C -0.460 4.460 14 H 0.093 0.907 15 C -0.171 4.171 16 N -0.529 5.529 17 Si 0.754 3.246 18 H -0.181 1.181 19 H -0.214 1.214 20 H -0.183 1.183 21 C -0.031 4.031 22 C -0.019 4.019 23 O -0.319 6.319 24 C -0.069 4.069 25 N -0.086 5.086 26 N -0.202 5.202 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.199 0.801 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.867 -2.902 12.811 19.101 hybrid contribution 1.300 -0.137 -0.087 1.310 sum -12.567 -3.039 12.724 18.140 Atomic orbital electron populations 1.21714 0.92999 1.02600 1.02916 1.21447 0.97726 0.94074 1.01955 1.20339 0.79851 0.99986 1.06162 1.25742 0.97916 1.01204 0.79829 1.74005 0.96578 1.20887 1.24970 1.74732 1.12897 1.20872 1.07870 1.27958 0.93260 1.09641 0.96633 1.85295 0.86915 1.92637 1.04300 1.23307 0.93624 1.08386 0.99954 1.19611 0.85782 0.80710 0.86081 1.90552 1.86752 1.57113 1.14287 1.43567 1.03620 1.63505 1.06059 1.18766 1.18135 1.29862 0.79281 0.90673 1.25841 0.97540 0.98471 0.95220 1.69823 1.36715 1.39186 1.07196 0.86135 0.79932 0.79614 0.78962 1.18102 1.21363 1.18335 1.21994 0.84707 0.97023 0.99399 1.22823 1.00475 0.91970 0.86661 1.88149 1.89770 1.23833 1.30098 1.22861 0.99017 0.82286 1.02754 1.45247 1.02425 1.55943 1.04959 1.59906 1.49795 1.22785 0.87747 0.91200 0.92012 0.91966 0.91840 0.93030 0.87745 0.86906 0.87604 0.87020 0.91155 0.91233 0.88271 0.90071 0.93541 0.93974 0.89656 0.92403 0.80135 0.79640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.11 -1.64 5.92 30.60 0.18 -1.46 16 3 C -0.02 -0.40 5.76 29.85 0.17 -0.23 16 4 C 0.22 6.03 7.43 137.63 1.02 7.05 16 5 N -0.32 -11.80 12.18 -49.53 -0.60 -12.41 16 6 N -0.32 -12.78 11.60 -56.85 -0.66 -13.44 16 7 C 0.10 3.39 8.13 179.55 1.46 4.85 16 8 S 0.08 2.70 21.11 -56.49 -1.19 1.50 16 9 C -0.10 -4.18 4.41 71.24 0.31 -3.87 16 10 C 0.49 22.10 7.63 87.66 0.67 22.76 16 11 O -0.60 -27.25 15.50 -3.07 -0.05 -27.30 16 12 N -0.45 -21.29 2.15 -635.55 -1.37 -22.66 16 13 C -0.33 -17.80 8.75 84.04 0.74 -17.06 16 14 H 0.08 4.42 7.23 -2.91 -0.02 4.40 16 15 C 0.03 1.84 5.34 84.93 0.45 2.29 16 16 N -0.89 -51.23 13.96 21.66 0.30 -50.93 16 17 Si 0.93 41.83 24.82 68.60 1.70 43.53 16 18 H -0.26 -10.69 6.70 99.48 0.67 -10.02 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.47 7.10 99.48 0.71 -10.76 16 21 C 0.09 3.84 4.42 86.38 0.38 4.22 16 22 C 0.06 2.15 6.27 71.98 0.45 2.60 16 23 O -0.40 -16.57 10.30 -148.98 -1.53 -18.10 16 24 C 0.03 0.82 11.01 113.37 1.25 2.07 16 25 N -0.30 -7.73 3.81 -185.33 -0.71 -8.43 16 26 N -0.57 -8.80 10.39 37.02 0.38 -8.42 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 4.59 7.67 -2.39 -0.02 4.57 16 35 H 0.11 4.86 8.10 -2.39 -0.02 4.84 16 36 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.07 3.03 3.21 -2.39 -0.01 3.03 16 38 H 0.10 3.84 7.54 -2.39 -0.02 3.82 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.38 4.04 9.21 -210.56 -1.94 2.10 16 45 H 0.38 5.28 8.81 -210.55 -1.85 3.43 16 Total: -1.00 -72.48 389.49 1.29 -71.19 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -2.80 Total: 22.94 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 7.80 Total: 22.52 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -2.65 Total: -116.28 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.58 Total: -45.40 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.70 Total: 43.53 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.19 Total: 1.50 kcal Total: -72.48 1.29 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629262016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.395 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds