Wall clock time and date at job start Wed Apr 1 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 C 1.50702 * 109.47291 * 120.00163 * 2 1 3 5 5 H 1.07995 * 119.99976 * 119.99516 * 4 2 1 6 6 C 1.37880 * 119.99925 * 299.99924 * 4 2 1 7 7 N 1.31507 * 120.00124 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99727 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47165 * 60.00337 * 8 6 4 10 10 H 1.48498 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47636 * 300.00179 * 8 6 4 12 12 N 1.46499 * 109.47393 * 240.00341 * 2 1 3 13 13 C 1.46507 * 119.99717 * 300.00307 * 12 2 1 14 14 S 1.65599 * 120.00274 * 119.99939 * 12 2 1 15 15 O 1.42099 * 106.40368 * 156.46556 * 14 12 2 16 16 O 1.42103 * 106.40364 * 23.54067 * 14 12 2 17 17 N 1.65605 * 107.21768 * 270.00361 * 14 12 2 18 18 C 1.46501 * 120.00298 * 64.99852 * 17 14 12 19 19 H 1.08999 * 109.44834 * 335.04303 * 18 17 14 20 20 C 1.53231 * 109.43441 * 215.10542 * 18 17 14 21 21 C 1.53437 * 109.48932 * 169.90829 * 20 18 17 22 22 C 1.50536 * 108.35768 * 49.71261 * 21 20 18 23 23 C 1.35584 * 124.30364 * 343.57662 * 22 21 20 24 24 N 1.32913 * 106.67768 * 179.83905 * 23 22 21 25 25 N 1.29025 * 108.63239 * 0.09022 * 24 23 22 26 26 N 1.29103 * 110.25970 * 359.97438 * 25 24 23 27 27 C 1.46502 * 126.00985 * 179.97438 * 26 25 24 28 28 C 1.50596 * 124.16154 * 359.72351 * 23 22 21 29 29 H 1.09005 * 109.47084 * 59.99812 * 1 2 3 30 30 H 1.08990 * 109.47090 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47004 * 299.99898 * 1 2 3 32 32 H 0.96998 * 120.00432 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.46749 * 269.99477 * 13 12 2 34 34 H 1.09000 * 109.47019 * 29.99922 * 13 12 2 35 35 H 1.09006 * 109.46931 * 149.99831 * 13 12 2 36 36 H 0.97004 * 119.99695 * 245.00333 * 17 14 12 37 37 H 1.08993 * 109.50683 * 49.88598 * 20 18 17 38 38 H 1.09007 * 109.46867 * 289.90133 * 20 18 17 39 39 H 1.09002 * 109.69285 * 289.98364 * 21 20 18 40 40 H 1.08996 * 109.69149 * 169.44029 * 21 20 18 41 41 H 1.08997 * 109.46821 * 269.99944 * 27 26 25 42 42 H 1.09005 * 109.46698 * 29.99116 * 27 26 25 43 43 H 1.08999 * 109.47603 * 149.99580 * 27 26 25 44 44 H 1.08998 * 109.69072 * 103.23187 * 28 23 22 45 45 H 1.09001 * 109.69143 * 223.80852 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3214 -1.1204 4.0078 9 1 3.8064 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2862 15 8 3.7118 -0.8787 -2.9815 16 8 3.5795 1.1831 -1.5748 17 7 1.9607 0.8093 -3.3997 18 6 1.0291 1.8621 -2.9874 19 1 0.8111 1.7579 -1.9245 20 6 -0.2703 1.7358 -3.7895 21 6 -1.3335 2.6666 -3.1916 22 6 -0.7275 4.0348 -3.0272 23 6 0.6040 4.2889 -3.0543 24 7 0.7459 5.5989 -2.8798 25 7 -0.4243 6.1266 -2.7501 26 7 -1.3366 5.2169 -2.8325 27 6 -2.7818 5.4348 -2.7321 28 6 1.6624 3.2351 -3.2471 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7088 1.1612 3.4844 33 1 2.4157 -2.7376 -0.9718 34 1 0.6904 -2.3001 -0.9848 35 1 1.6238 -2.2851 -2.5004 36 1 1.9861 0.5191 -4.3250 37 1 -0.6248 0.7059 -3.7485 38 1 -0.0855 2.0148 -4.8270 39 1 -1.6506 2.2862 -2.2206 40 1 -2.1912 2.7229 -3.8618 41 1 -3.0909 5.3473 -1.6905 42 1 -3.0255 6.4312 -3.1008 43 1 -3.3043 4.6882 -3.3301 44 1 2.0414 3.2776 -4.2681 45 1 2.4789 3.4017 -2.5445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645920589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:29 Heat of formation + Delta-G solvation = 21.621804 kcal Electronic energy + Delta-G solvation = -29912.688705 eV Core-core repulsion = 25901.306082 eV Total energy + Delta-G solvation = -4011.382623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.37262 -38.02447 -36.61628 -36.19005 -35.21399 -34.95662 -33.44080 -32.59927 -30.36489 -29.16710 -28.85078 -27.82788 -25.63122 -25.18351 -24.05871 -22.55035 -21.39229 -20.82958 -19.94895 -18.80851 -17.34836 -17.22919 -16.88087 -16.79588 -16.24451 -15.82127 -15.14980 -14.75639 -14.39021 -14.18337 -13.97822 -13.84873 -13.55595 -13.42094 -13.20600 -12.97178 -12.86729 -12.55312 -12.28655 -12.01276 -11.76736 -11.72790 -11.57764 -11.46515 -11.36214 -11.32097 -11.24373 -10.99506 -10.83917 -10.78697 -10.61560 -10.47885 -10.32318 -10.02964 -9.94303 -9.43192 -9.28445 -8.80729 -8.46997 -8.01600 -6.09455 -4.15726 1.17785 1.55744 2.28587 2.60555 3.29525 3.34255 3.37311 3.44409 4.00609 4.18032 4.34342 4.39113 4.58719 4.61715 4.73226 4.74438 4.94709 5.01298 5.04750 5.16555 5.21747 5.26460 5.39010 5.51409 5.55739 5.68747 5.72062 5.82511 5.95907 6.10433 6.12134 6.24784 6.34423 6.39422 6.54703 6.57470 6.69491 6.73325 6.93176 7.12646 7.44388 7.59643 7.75458 7.99907 8.24567 8.54550 8.86202 9.50329 10.96187 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011222 B = 0.004398 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.475221 B = 6365.091362 C = 7719.284703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.111 3.889 14 S 2.776 3.224 15 O -0.996 6.996 16 O -0.969 6.969 17 N -1.128 6.128 18 C 0.155 3.845 19 H 0.101 0.899 20 C -0.117 4.117 21 C -0.043 4.043 22 C -0.022 4.022 23 C -0.006 4.006 24 N -0.258 5.258 25 N -0.100 5.100 26 N -0.286 5.286 27 C 0.081 3.919 28 C -0.053 4.053 29 H 0.011 0.989 30 H 0.035 0.965 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.410 0.590 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 2.291 -14.291 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.834 5.834 13 C -0.036 4.036 14 S 2.785 3.215 15 O -0.980 6.980 16 O -0.952 6.952 17 N -0.884 5.884 18 C 0.047 3.953 19 H 0.119 0.881 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.156 4.156 23 C -0.147 4.147 24 N -0.123 5.123 25 N -0.078 5.078 26 N -0.078 5.078 27 C -0.060 4.060 28 C -0.093 4.093 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.242 0.758 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.900 4.087 -13.734 17.416 hybrid contribution -0.593 -1.547 0.460 1.720 sum -10.493 2.539 -13.274 17.110 Atomic orbital electron populations 1.22182 0.98418 0.99848 1.00490 1.18752 0.91170 0.93023 0.80729 0.92315 1.21277 1.31650 1.13027 0.89996 0.91981 1.24890 0.94935 0.94970 0.98985 1.69829 1.36518 1.22664 1.23905 0.86563 0.79441 0.79535 0.81914 1.20121 1.21253 1.20259 1.57707 1.70108 1.19893 1.35666 1.21130 1.01641 0.82001 0.98786 1.02112 0.73578 0.73258 0.72597 1.93551 1.69502 1.60133 1.74834 1.93620 1.73604 1.55688 1.72297 1.56294 1.57180 1.50834 1.24090 1.20819 0.88192 0.85840 1.00474 0.88100 1.21883 0.93828 1.00162 0.99816 1.20160 0.97997 0.87169 1.02934 1.21839 0.93728 0.90319 1.09696 1.21540 0.93282 0.92942 1.06933 1.74807 1.14428 1.07435 1.15603 1.78565 0.91550 1.16026 1.21648 1.46783 1.09184 1.05464 1.46365 1.22242 0.73628 1.05160 1.04983 1.20514 0.95662 0.89326 1.03845 0.97031 0.94612 0.88866 0.92658 0.93315 0.91004 0.93273 0.75803 0.89388 0.90744 0.88766 0.89861 0.88859 0.88154 0.88469 0.89551 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.83 37.16 0.33 -2.78 16 2 C 0.27 6.17 1.91 -69.08 -0.13 6.03 16 3 H 0.06 1.53 6.74 -51.93 -0.35 1.18 16 4 C -0.52 -13.64 8.37 -34.44 -0.29 -13.93 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.99 -19.40 3.12 -115.85 -0.36 -19.76 16 13 C 0.11 1.86 9.53 59.85 0.57 2.43 16 14 S 2.78 51.85 6.00 -107.50 -0.65 51.21 16 15 O -1.00 -19.94 17.21 -57.17 -0.98 -20.93 16 16 O -0.97 -21.94 16.21 -57.17 -0.93 -22.86 16 17 N -1.13 -15.05 5.53 -4.61 -0.03 -15.08 16 18 C 0.16 2.06 2.65 -67.60 -0.18 1.88 16 19 H 0.10 1.60 5.47 -51.93 -0.28 1.31 16 20 C -0.12 -1.09 5.44 -26.39 -0.14 -1.23 16 21 C -0.04 -0.38 5.97 -27.74 -0.17 -0.55 16 22 C -0.02 -0.28 6.76 -82.50 -0.56 -0.83 16 23 C -0.01 -0.09 7.11 -83.12 -0.59 -0.69 16 24 N -0.26 -4.53 12.40 33.16 0.41 -4.12 16 25 N -0.10 -1.57 13.19 60.35 0.80 -0.78 16 26 N -0.29 -3.46 3.73 -64.00 -0.24 -3.70 16 27 C 0.08 0.51 11.27 59.85 0.67 1.18 16 28 C -0.05 -0.76 5.91 -27.72 -0.16 -0.93 16 29 H 0.01 0.19 6.74 -51.93 -0.35 -0.16 16 30 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 31 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 35 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 36 H 0.41 4.17 8.84 -34.47 -0.30 3.86 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.59 8.12 -51.92 -0.42 0.17 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.33 7.71 -51.93 -0.40 -0.07 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.10 1.73 7.89 -51.93 -0.41 1.32 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -35.50 369.76 -7.94 -43.44 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.40 Total: 2.52 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.74 Total: -7.78 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 1.21 Total: -67.06 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.91 Total: -43.79 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.65 Total: 51.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.50 -7.94 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645920589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.061 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds