Wall clock time and date at job start Wed Apr 1 2020 02:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47316 * 2 1 4 4 C 1.50699 * 109.47169 * 239.99940 * 2 1 3 5 5 H 1.08003 * 119.99868 * 245.18830 * 4 2 1 6 6 C 1.37875 * 120.00361 * 65.19179 * 4 2 1 7 7 N 1.31515 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00393 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47234 * 59.99597 * 8 6 4 10 10 H 1.48498 * 109.47224 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47082 * 300.00089 * 8 6 4 12 12 N 1.46499 * 109.47007 * 119.99881 * 2 1 3 13 13 C 1.46498 * 120.00077 * 55.32446 * 12 2 1 14 14 S 1.65602 * 120.00041 * 235.32865 * 12 2 1 15 15 O 1.42099 * 106.40204 * 162.37599 * 14 12 2 16 16 O 1.42098 * 106.40214 * 29.45136 * 14 12 2 17 17 N 1.65603 * 107.21393 * 275.91286 * 14 12 2 18 18 C 1.46499 * 120.00548 * 296.70988 * 17 14 12 19 19 H 1.08995 * 109.43121 * 24.25464 * 18 17 14 20 20 C 1.53122 * 109.48970 * 144.18617 * 18 17 14 21 21 C 1.53437 * 109.58648 * 190.05844 * 20 18 17 22 22 C 1.50539 * 108.32575 * 310.29377 * 21 20 18 23 23 C 1.35587 * 124.30044 * 16.41096 * 22 21 20 24 24 N 1.32910 * 106.67604 * 180.23919 * 23 22 21 25 25 N 1.29019 * 108.63484 * 359.90629 * 24 23 22 26 26 N 1.29109 * 110.26053 * 0.02562 * 25 24 23 27 27 C 1.46500 * 126.00921 * 180.02562 * 26 25 24 28 28 C 1.50598 * 124.16280 * 0.25789 * 23 22 21 29 29 H 1.08993 * 109.47518 * 300.00346 * 1 2 3 30 30 H 1.09002 * 109.47045 * 60.00071 * 1 2 3 31 31 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00461 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47310 * 270.00031 * 13 12 2 34 34 H 1.09007 * 109.47077 * 30.00586 * 13 12 2 35 35 H 1.08998 * 109.47561 * 149.99661 * 13 12 2 36 36 H 0.97002 * 119.99661 * 116.71351 * 17 14 12 37 37 H 1.08996 * 109.43119 * 70.03275 * 20 18 17 38 38 H 1.08995 * 109.43437 * 310.09309 * 20 18 17 39 39 H 1.08997 * 109.69008 * 190.58673 * 21 20 18 40 40 H 1.08997 * 109.69489 * 70.00203 * 21 20 18 41 41 H 1.08992 * 109.46997 * 270.04009 * 27 26 25 42 42 H 1.09001 * 109.46451 * 30.04176 * 27 26 25 43 43 H 1.08996 * 109.46797 * 150.04016 * 27 26 25 44 44 H 1.08995 * 109.69109 * 136.19367 * 28 23 22 45 45 H 1.09007 * 109.69221 * 256.73072 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5824 -1.6348 -1.1335 6 6 1.7898 -0.1803 -2.4799 7 7 1.1196 0.9451 -2.5980 8 14 2.4119 -1.0613 -4.0051 9 1 1.8157 -2.4198 -4.0699 10 1 2.0237 -0.2916 -5.2143 11 1 3.8915 -1.1725 -3.9436 12 7 2.0183 -0.6906 1.1962 13 6 1.5819 -2.0598 1.4810 14 16 3.0635 0.0765 2.2265 15 8 3.0233 -0.6455 3.4497 16 8 2.7727 1.4643 2.1331 17 7 4.5895 -0.1237 1.6152 18 6 5.1642 -1.4667 1.5052 19 1 4.3610 -2.2013 1.4479 20 6 6.0239 -1.5525 0.2409 21 6 6.4206 -3.0127 -0.0132 22 6 6.9756 -3.5818 1.2652 23 6 6.8056 -3.0215 2.4881 24 7 7.4394 -3.8026 3.3569 25 7 7.9690 -4.7885 2.7149 26 7 7.7111 -4.6908 1.4536 27 6 8.1444 -5.6243 0.4110 28 6 6.0321 -1.7536 2.7373 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.9493 1.3183 -3.4769 33 1 0.6769 -2.0339 2.0879 34 1 1.3766 -2.5779 0.5442 35 1 2.3677 -2.5863 2.0226 36 1 5.1028 0.6484 1.3301 37 1 6.9225 -0.9497 0.3719 38 1 5.4557 -1.1772 -0.6101 39 1 7.1792 -3.0565 -0.7946 40 1 5.5439 -3.5836 -0.3192 41 1 9.1114 -5.3085 0.0197 42 1 8.2327 -6.6252 0.8335 43 1 7.4115 -5.6337 -0.3957 44 1 5.3962 -1.8776 3.6138 45 1 6.7241 -0.9271 2.8997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645920590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:32 Heat of formation + Delta-G solvation = 17.802810 kcal Electronic energy + Delta-G solvation = -29786.245593 eV Core-core repulsion = 25774.697366 eV Total energy + Delta-G solvation = -4011.548227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.46666 -37.97662 -36.61680 -36.17132 -35.24846 -35.03826 -33.39554 -32.64254 -30.38053 -29.17463 -28.87431 -27.89983 -25.62330 -25.17103 -24.04033 -22.55963 -21.46248 -20.84007 -19.94960 -18.84521 -17.29946 -17.19174 -16.93321 -16.76255 -16.42612 -15.77993 -15.09677 -14.88436 -14.38544 -14.20744 -13.95571 -13.88845 -13.51336 -13.42571 -13.30948 -13.02804 -12.80975 -12.50213 -12.29308 -12.05130 -11.83844 -11.76112 -11.53970 -11.46522 -11.39751 -11.31384 -11.22953 -11.07421 -10.94129 -10.80871 -10.66273 -10.47030 -10.32896 -10.12456 -10.03054 -9.45054 -9.23829 -8.89117 -8.55410 -8.01879 -6.16222 -4.24228 1.24128 1.46098 2.19831 2.49799 3.16474 3.22903 3.25085 3.42405 3.98725 4.18203 4.27706 4.30782 4.60647 4.63447 4.65752 4.72228 4.92468 4.95891 5.03037 5.15280 5.17996 5.22786 5.39504 5.52275 5.57172 5.71081 5.73856 5.91143 6.02732 6.09470 6.11087 6.21801 6.30359 6.38792 6.47497 6.58476 6.79355 6.81321 7.06347 7.22697 7.46937 7.55480 7.72415 7.94398 8.18577 8.44300 8.78636 9.41661 10.89955 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.004590 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.281225 B = 6098.539300 C = 7824.158954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.061 0.939 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.104 3.896 14 S 2.781 3.219 15 O -0.995 6.995 16 O -0.982 6.982 17 N -1.120 6.120 18 C 0.167 3.833 19 H 0.088 0.912 20 C -0.123 4.123 21 C -0.043 4.043 22 C -0.020 4.020 23 C -0.009 4.009 24 N -0.260 5.260 25 N -0.102 5.102 26 N -0.287 5.287 27 C 0.081 3.919 28 C -0.053 4.053 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.089 -9.349 1.456 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.043 4.043 14 S 2.790 3.210 15 O -0.978 6.978 16 O -0.966 6.966 17 N -0.876 5.876 18 C 0.058 3.942 19 H 0.106 0.894 20 C -0.162 4.162 21 C -0.083 4.083 22 C -0.154 4.154 23 C -0.150 4.150 24 N -0.125 5.125 25 N -0.080 5.080 26 N -0.079 5.079 27 C -0.060 4.060 28 C -0.094 4.094 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.398 -9.778 3.288 15.373 hybrid contribution 0.244 -0.010 -2.402 2.414 sum 11.642 -9.788 0.886 15.236 Atomic orbital electron populations 1.21995 0.98087 0.99555 1.00392 1.18713 0.91813 0.92820 0.80108 0.92170 1.21318 1.35937 1.08962 0.90300 0.91987 1.24928 0.95073 0.94885 0.98891 1.69897 1.39433 1.18842 1.24142 0.86646 0.79116 0.79639 0.82431 1.20351 1.21323 1.20271 1.57719 1.60124 1.24490 1.41002 1.21232 0.98760 0.82980 1.01290 1.01866 0.72632 0.73163 0.73323 1.93557 1.86743 1.74585 1.42964 1.93598 1.83440 1.32363 1.87185 1.56062 1.35446 1.13148 1.82955 1.20582 0.96135 0.83870 0.93640 0.89363 1.21921 1.00626 0.94648 0.99016 1.20184 1.00806 0.96456 0.90838 1.21977 1.02244 0.91250 0.99902 1.21581 1.03928 1.00403 0.89087 1.74803 1.10348 1.00744 1.26570 1.78563 1.21848 1.19751 0.87829 1.46811 1.34764 1.18198 1.08133 1.22248 1.02253 0.93002 0.88539 1.20558 0.97529 0.91339 1.00000 0.96621 0.89834 0.94751 0.92547 0.93804 0.90379 0.93002 0.75282 0.90772 0.88119 0.89743 0.89010 0.89134 0.88049 0.88229 0.88413 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.95 37.16 0.33 -2.84 16 2 C 0.27 6.14 2.53 -69.08 -0.17 5.96 16 3 H 0.06 1.55 7.01 -51.93 -0.36 1.19 16 4 C -0.53 -12.34 8.07 -34.44 -0.28 -12.62 16 5 H 0.06 1.38 7.48 -52.48 -0.39 0.98 16 6 C 0.07 1.61 5.32 -17.82 -0.09 1.51 16 7 N -0.89 -23.21 11.71 55.43 0.65 -22.56 16 8 Si 0.89 18.87 29.54 -169.99 -5.02 13.85 16 9 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 N -0.99 -19.20 3.12 -115.86 -0.36 -19.56 16 13 C 0.10 1.74 8.93 59.85 0.53 2.27 16 14 S 2.78 51.82 5.98 -107.50 -0.64 51.18 16 15 O -1.00 -19.55 16.64 -57.17 -0.95 -20.50 16 16 O -0.98 -21.62 16.85 -57.17 -0.96 -22.58 16 17 N -1.12 -16.37 5.52 -4.65 -0.03 -16.39 16 18 C 0.17 2.18 2.68 -67.65 -0.18 2.00 16 19 H 0.09 1.20 6.70 -51.93 -0.35 0.85 16 20 C -0.12 -1.34 5.44 -26.44 -0.14 -1.48 16 21 C -0.04 -0.40 5.95 -27.74 -0.16 -0.57 16 22 C -0.02 -0.23 6.76 -82.49 -0.56 -0.79 16 23 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 24 N -0.26 -4.17 12.40 33.16 0.41 -3.76 16 25 N -0.10 -1.47 13.19 60.35 0.80 -0.68 16 26 N -0.29 -3.18 3.73 -64.01 -0.24 -3.42 16 27 C 0.08 0.45 11.27 59.85 0.67 1.12 16 28 C -0.05 -0.71 5.91 -27.71 -0.16 -0.88 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 2.06 6.49 -51.93 -0.34 1.72 16 31 H 0.03 0.72 7.57 -51.93 -0.39 0.32 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.29 7.28 -51.93 -0.38 0.92 16 35 H 0.05 0.77 6.62 -51.93 -0.34 0.42 16 36 H 0.41 5.27 8.85 -34.47 -0.30 4.97 16 37 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.36 7.96 -51.93 -0.41 -0.06 16 44 H 0.10 1.44 7.97 -51.93 -0.41 1.03 16 45 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -33.04 374.40 -8.14 -41.19 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.63 Total: 4.63 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.81 Total: -7.04 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: 1.23 Total: -66.38 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.91 Total: -43.08 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.64 Total: 51.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.04 -8.14 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645920590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.988 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds