Wall clock time and date at job start Wed Apr 1 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99784 * 2 1 4 4 C 1.53006 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30304 * 126.33648 * 270.15910 * 5 4 3 7 7 N 1.28522 * 110.07385 * 180.30809 * 6 5 4 8 8 C 1.31291 * 109.85787 * 359.71685 * 7 6 5 9 9 S 1.76200 * 126.48325 * 179.97438 * 8 7 6 10 10 C 1.80996 * 100.00335 * 0.02957 * 9 8 7 11 11 H 1.09011 * 109.46939 * 304.99741 * 10 9 8 12 12 C 1.53003 * 109.47324 * 64.99388 * 10 9 8 13 13 C 1.50697 * 109.47379 * 185.00175 * 10 9 8 14 14 O 1.21277 * 119.99606 * 339.99417 * 13 10 9 15 15 N 1.34776 * 119.99938 * 159.99843 * 13 10 9 16 16 C 1.46496 * 120.00441 * 359.97438 * 15 13 10 17 17 C 1.46510 * 119.99521 * 179.97438 * 15 13 10 18 18 C 1.50700 * 109.46963 * 89.99962 * 17 15 13 19 19 H 1.07999 * 120.00020 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99624 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99947 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99872 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47200 * 89.99875 * 22 20 18 24 24 H 1.48498 * 109.46980 * 210.00356 * 22 20 18 25 25 H 1.48499 * 109.47188 * 330.00017 * 22 20 18 26 26 N 1.36533 * 107.02826 * 359.97438 * 8 7 6 27 27 N 1.36605 * 127.14037 * 180.02562 * 26 8 7 28 28 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46680 * 299.99677 * 1 2 3 30 30 H 1.08992 * 109.47259 * 59.99657 * 1 2 3 31 31 H 1.08999 * 109.47278 * 60.00406 * 3 2 1 32 32 H 1.09002 * 109.47256 * 300.00635 * 3 2 1 33 33 H 1.08999 * 109.46959 * 59.99905 * 4 3 2 34 34 H 1.08997 * 109.46888 * 300.00123 * 4 3 2 35 35 H 1.08996 * 109.46940 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47147 * 300.00239 * 12 10 9 37 37 H 1.08998 * 109.46848 * 60.00571 * 12 10 9 38 38 H 1.08996 * 109.47431 * 89.99742 * 16 15 13 39 39 H 1.08999 * 109.47213 * 210.00742 * 16 15 13 40 40 H 1.09007 * 109.46985 * 329.99879 * 16 15 13 41 41 H 1.09006 * 109.46718 * 210.00154 * 17 15 13 42 42 H 1.08991 * 109.46942 * 329.99582 * 17 15 13 43 43 H 0.97003 * 119.99959 * 179.97438 * 21 20 18 44 44 H 1.00896 * 111.00330 * 90.02165 * 27 26 8 45 45 H 1.00902 * 111.00023 * 213.98415 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4594 3.2686 -1.0493 7 7 4.9682 4.3925 -0.6889 8 6 5.0041 4.4660 0.6214 9 16 5.6156 5.8130 1.5788 10 6 6.1207 6.9371 0.2532 11 1 6.8106 6.4228 -0.4162 12 6 4.8871 7.3861 -0.5327 13 6 6.8029 8.1416 0.8487 14 8 6.6266 8.4235 2.0150 15 7 7.6089 8.9057 0.0851 16 6 7.8224 8.5650 -1.3236 17 6 8.2717 10.0771 0.6640 18 6 9.6095 9.6706 1.2262 19 1 9.9335 8.6425 1.1594 20 6 10.4199 10.6113 1.8259 21 7 10.0250 11.8631 1.9076 22 14 12.0784 10.1076 2.5221 23 1 13.1186 10.2442 1.4711 24 1 12.4188 10.9829 3.6724 25 1 12.0163 8.6952 2.9764 26 7 4.4779 3.3014 1.1018 27 7 4.3192 2.9463 2.4113 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8568 0.6440 -0.8908 34 1 3.8575 0.6436 0.8891 35 1 5.1914 8.0626 -1.3312 36 1 4.3938 6.5148 -0.9634 37 1 4.1974 7.9003 0.1366 38 1 7.0720 9.0649 -1.9361 39 1 8.8167 8.8902 -1.6295 40 1 7.7372 7.4860 -1.4534 41 1 8.4165 10.8316 -0.1092 42 1 7.6522 10.4880 1.4611 43 1 10.5950 12.5248 2.3298 44 1 3.4189 3.2403 2.7592 45 1 4.4480 1.9532 2.5349 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647093436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:23 Heat of formation + Delta-G solvation = 30.218968 kcal Electronic energy + Delta-G solvation = -27359.946110 eV Core-core repulsion = 23348.936288 eV Total energy + Delta-G solvation = -4011.009822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.26065 -39.17866 -38.56104 -36.83242 -34.92972 -33.85356 -33.24252 -32.23612 -30.19938 -29.53213 -27.79992 -26.99323 -25.97964 -24.46901 -24.24569 -23.06347 -22.42615 -21.57778 -19.25381 -18.28034 -17.93610 -17.18443 -16.97017 -16.76365 -16.49394 -16.42428 -15.84536 -15.45431 -15.14569 -14.66210 -14.62124 -14.21464 -14.05548 -13.82304 -13.26415 -13.08710 -12.73849 -12.44624 -12.23685 -12.21460 -12.02248 -11.99947 -11.88618 -11.74945 -11.69609 -11.38116 -11.21496 -10.92338 -10.89714 -10.59443 -10.31850 -10.23278 -10.16823 -10.11516 -9.84703 -9.64393 -9.05809 -8.44140 -7.74424 -7.61804 -6.05226 -4.09992 0.92979 1.24380 1.89169 2.04245 2.41533 3.01096 3.26201 3.31154 3.37755 3.43095 3.78828 3.84327 4.06744 4.34071 4.44491 4.45872 4.63085 4.78722 4.81033 4.86030 4.94327 5.00161 5.04104 5.13326 5.17104 5.23148 5.29668 5.38435 5.55659 5.64124 5.77708 5.87750 5.94498 6.02886 6.17070 6.29391 6.46510 6.96907 7.01340 7.38830 7.46322 7.90486 8.20523 8.27859 8.30509 8.81003 8.97919 9.54998 11.02888 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.002146 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.248454 B =13045.023204 C =13411.964413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.028 4.028 5 C 0.140 3.860 6 N -0.261 5.261 7 N -0.291 5.291 8 C 0.183 3.817 9 S 0.104 5.896 10 C -0.119 4.119 11 H 0.121 0.879 12 C -0.141 4.141 13 C 0.527 3.473 14 O -0.528 6.528 15 N -0.590 5.590 16 C 0.078 3.922 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 N -0.308 5.308 27 N -0.583 5.583 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.367 0.633 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 -21.979 -4.336 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.068 4.068 5 C -0.131 4.131 6 N -0.102 5.102 7 N -0.137 5.137 8 C -0.190 4.190 9 S 0.333 5.667 10 C -0.252 4.252 11 H 0.139 0.861 12 C -0.200 4.200 13 C 0.310 3.690 14 O -0.406 6.406 15 N -0.321 5.321 16 C -0.066 4.066 17 C 0.127 3.873 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 N -0.091 5.091 27 N -0.215 5.215 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.185 0.815 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -17.456 -20.770 -3.764 27.391 hybrid contribution -0.195 -1.227 0.131 1.249 sum -17.650 -21.996 -3.633 28.435 Atomic orbital electron populations 1.22788 0.80191 1.03153 1.00332 1.87837 1.20357 1.27114 1.95515 1.22414 0.92335 0.85214 1.01144 1.19758 0.93213 0.87648 1.06167 1.25017 1.06284 0.98381 0.83450 1.73953 1.13175 0.99812 1.23233 1.74847 1.20037 1.13051 1.05785 1.27363 1.02917 0.93484 0.95252 1.86585 1.73705 1.03055 1.03328 1.23783 1.02663 0.98364 1.00344 0.86084 1.22000 0.94965 1.03022 1.00058 1.19300 0.80008 0.83217 0.86485 1.90712 1.62981 1.71000 1.15907 1.48053 1.44720 1.29247 1.10105 1.21785 1.02367 1.00000 0.82474 1.19375 0.92245 0.81180 0.94518 1.21422 1.01718 0.95368 1.38159 0.92329 1.24931 0.98566 0.94821 0.95743 1.69932 1.37565 1.01586 1.44208 0.86485 0.83575 0.78645 0.78675 1.20630 1.21071 1.19818 1.44968 1.47557 1.14396 1.02153 1.59606 1.40234 1.24502 0.97123 0.89173 0.93925 0.93660 0.93628 0.91866 0.86739 0.89362 0.90820 0.89987 0.91393 0.93223 0.90383 0.92120 0.94632 0.93605 0.92686 0.81506 0.80649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.74 10.70 -35.23 -0.38 -3.12 16 3 C 0.07 0.43 5.92 37.16 0.22 0.65 16 4 C -0.03 -0.19 6.06 -27.88 -0.17 -0.36 16 5 C 0.14 1.47 7.38 -154.00 -1.14 0.33 16 6 N -0.26 -3.61 12.18 32.99 0.40 -3.21 16 7 N -0.29 -4.37 9.75 30.68 0.30 -4.07 16 8 C 0.18 2.57 7.88 -88.34 -0.70 1.87 16 9 S 0.10 1.62 20.96 -107.50 -2.25 -0.63 16 10 C -0.12 -1.92 1.96 -27.88 -0.05 -1.98 16 11 H 0.12 1.86 6.31 -51.91 -0.33 1.54 16 12 C -0.14 -1.96 8.93 37.16 0.33 -1.63 16 13 C 0.53 10.99 6.85 -10.99 -0.08 10.92 16 14 O -0.53 -13.14 15.62 5.56 0.09 -13.06 16 15 N -0.59 -12.48 2.86 -182.95 -0.52 -13.01 16 16 C 0.08 1.25 9.56 59.84 0.57 1.82 16 17 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 18 C -0.53 -14.94 9.39 -34.44 -0.32 -15.27 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 26 N -0.31 -3.32 3.81 -9.93 -0.04 -3.36 16 27 N -0.58 -4.23 10.41 60.35 0.63 -3.60 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.41 7.40 -51.93 -0.38 0.03 16 35 H 0.07 0.94 6.94 -51.93 -0.36 0.58 16 36 H 0.08 1.11 5.91 -51.93 -0.31 0.81 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 39 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.37 1.85 9.21 -181.37 -1.67 0.18 16 45 H 0.38 1.63 8.26 -181.36 -1.50 0.13 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -36.09 390.30 -9.50 -45.60 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -8.98 Total: -4.25 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.34 Total: 5.62 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 1.50 Total: -52.96 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.29 Total: -16.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.25 Total: -0.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.09 -9.50 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647093436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.817 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds