Wall clock time and date at job start Wed Apr 1 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99784 * 2 1 4 4 C 1.53006 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30304 * 126.33648 * 270.15910 * 5 4 3 7 7 N 1.28522 * 110.07385 * 180.30809 * 6 5 4 8 8 C 1.31291 * 109.85787 * 359.71685 * 7 6 5 9 9 S 1.76200 * 126.48325 * 179.97438 * 8 7 6 10 10 C 1.80996 * 100.00335 * 0.02957 * 9 8 7 11 11 H 1.09011 * 109.46939 * 304.99741 * 10 9 8 12 12 C 1.53003 * 109.47324 * 64.99388 * 10 9 8 13 13 C 1.50697 * 109.47379 * 185.00175 * 10 9 8 14 14 O 1.21277 * 119.99606 * 339.99417 * 13 10 9 15 15 N 1.34776 * 119.99938 * 159.99843 * 13 10 9 16 16 C 1.46496 * 120.00441 * 359.97438 * 15 13 10 17 17 C 1.46510 * 119.99521 * 179.97438 * 15 13 10 18 18 C 1.50700 * 109.46963 * 89.99962 * 17 15 13 19 19 H 1.07999 * 120.00020 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99624 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99947 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99872 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47200 * 89.99875 * 22 20 18 24 24 H 1.48498 * 109.46980 * 210.00356 * 22 20 18 25 25 H 1.48499 * 109.47188 * 330.00017 * 22 20 18 26 26 N 1.36533 * 107.02826 * 359.97438 * 8 7 6 27 27 N 1.36605 * 127.14037 * 180.02562 * 26 8 7 28 28 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46680 * 299.99677 * 1 2 3 30 30 H 1.08992 * 109.47259 * 59.99657 * 1 2 3 31 31 H 1.08999 * 109.47278 * 60.00406 * 3 2 1 32 32 H 1.09002 * 109.47256 * 300.00635 * 3 2 1 33 33 H 1.08999 * 109.46959 * 59.99905 * 4 3 2 34 34 H 1.08997 * 109.46888 * 300.00123 * 4 3 2 35 35 H 1.08996 * 109.46940 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47147 * 300.00239 * 12 10 9 37 37 H 1.08998 * 109.46848 * 60.00571 * 12 10 9 38 38 H 1.08996 * 109.47431 * 89.99742 * 16 15 13 39 39 H 1.08999 * 109.47213 * 210.00742 * 16 15 13 40 40 H 1.09007 * 109.46985 * 329.99879 * 16 15 13 41 41 H 1.09006 * 109.46718 * 210.00154 * 17 15 13 42 42 H 1.08991 * 109.46942 * 329.99582 * 17 15 13 43 43 H 0.97003 * 119.99959 * 179.97438 * 21 20 18 44 44 H 1.00896 * 111.00330 * 90.02165 * 27 26 8 45 45 H 1.00902 * 111.00023 * 213.98415 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4594 3.2686 -1.0493 7 7 4.9682 4.3925 -0.6889 8 6 5.0041 4.4660 0.6214 9 16 5.6156 5.8130 1.5788 10 6 6.1207 6.9371 0.2532 11 1 6.8106 6.4228 -0.4162 12 6 4.8871 7.3861 -0.5327 13 6 6.8029 8.1416 0.8487 14 8 6.6266 8.4235 2.0150 15 7 7.6089 8.9057 0.0851 16 6 7.8224 8.5650 -1.3236 17 6 8.2717 10.0771 0.6640 18 6 9.6095 9.6706 1.2262 19 1 9.9335 8.6425 1.1594 20 6 10.4199 10.6113 1.8259 21 7 10.0250 11.8631 1.9076 22 14 12.0784 10.1076 2.5221 23 1 13.1186 10.2442 1.4711 24 1 12.4188 10.9829 3.6724 25 1 12.0163 8.6952 2.9764 26 7 4.4779 3.3014 1.1018 27 7 4.3192 2.9463 2.4113 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8568 0.6440 -0.8908 34 1 3.8575 0.6436 0.8891 35 1 5.1914 8.0626 -1.3312 36 1 4.3938 6.5148 -0.9634 37 1 4.1974 7.9003 0.1366 38 1 7.0720 9.0649 -1.9361 39 1 8.8167 8.8902 -1.6295 40 1 7.7372 7.4860 -1.4534 41 1 8.4165 10.8316 -0.1092 42 1 7.6522 10.4880 1.4611 43 1 10.5950 12.5248 2.3298 44 1 3.4189 3.2403 2.7592 45 1 4.4480 1.9532 2.5349 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647093436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:22 Heat of formation + Delta-G solvation = 5.061630 kcal Electronic energy + Delta-G solvation = -27361.037014 eV Core-core repulsion = 23348.936288 eV Total energy + Delta-G solvation = -4012.100726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.18745 -40.85029 -39.02990 -37.62904 -36.70691 -35.07411 -34.48919 -33.89985 -31.03253 -30.33218 -29.69305 -27.50743 -27.41153 -26.07330 -24.87617 -24.24811 -23.97056 -22.35529 -20.55070 -19.44014 -18.72111 -18.67042 -18.20614 -18.13997 -17.52668 -17.12546 -16.95160 -16.48128 -16.45248 -16.05709 -15.83337 -15.50293 -14.97268 -14.69891 -14.60840 -14.42583 -14.09016 -13.61411 -13.54270 -13.41716 -13.22891 -13.10700 -13.03922 -12.85313 -12.79544 -12.63955 -12.52569 -12.37842 -12.22802 -12.20845 -11.88847 -11.71610 -11.28123 -11.15461 -10.77129 -10.75562 -10.63236 -10.57906 -9.51067 -8.78404 -8.22455 -6.36606 -0.18873 0.34876 0.83886 1.06882 1.37600 1.40294 1.45794 1.50609 1.65801 2.21832 2.41868 2.47372 3.07608 3.22862 3.42022 3.44908 3.74459 3.83363 3.89866 3.94040 4.01865 4.16619 4.39872 4.40284 4.47201 4.48805 4.53076 4.60110 4.71033 4.73748 4.79073 4.84426 4.85304 4.94215 4.97870 5.14980 5.21980 5.52234 5.61728 5.78331 6.04653 6.04689 6.29812 6.57631 6.72039 7.18336 7.34510 7.36190 8.84741 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.002146 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.248454 B =13045.023204 C =13411.964413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.071 3.929 4 C -0.025 4.025 5 C 0.163 3.837 6 N -0.298 5.298 7 N -0.308 5.308 8 C 0.171 3.829 9 S 0.082 5.918 10 C -0.103 4.103 11 H 0.132 0.868 12 C -0.132 4.132 13 C 0.521 3.479 14 O -0.578 6.578 15 N -0.596 5.596 16 C 0.072 3.928 17 C 0.260 3.740 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.274 1.274 26 N -0.302 5.302 27 N -0.585 5.585 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.004 0.996 43 H 0.267 0.733 44 H 0.381 0.619 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 -24.439 -4.760 31.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.007 4.007 4 C -0.065 4.065 5 C -0.109 4.109 6 N -0.138 5.138 7 N -0.153 5.153 8 C -0.205 4.205 9 S 0.310 5.690 10 C -0.236 4.236 11 H 0.150 0.850 12 C -0.191 4.191 13 C 0.307 3.693 14 O -0.458 6.458 15 N -0.326 5.326 16 C -0.070 4.070 17 C 0.139 3.861 18 C -0.583 4.583 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.189 1.189 24 H -0.205 1.205 25 H -0.199 1.199 26 N -0.083 5.083 27 N -0.222 5.222 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.049 0.951 42 H 0.022 0.978 43 H 0.076 0.924 44 H 0.202 0.798 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.815 -23.270 -4.230 29.610 hybrid contribution -0.200 -0.574 0.274 0.666 sum -18.015 -23.843 -3.957 30.144 Atomic orbital electron populations 1.22963 0.79001 1.04204 1.00912 1.87805 1.21692 1.27234 1.95618 1.22323 0.91876 0.85210 1.01268 1.19923 0.93430 0.85522 1.07633 1.25624 1.03839 0.98796 0.82596 1.73906 1.15011 1.00177 1.24740 1.74752 1.20360 1.13904 1.06318 1.26953 1.04321 0.94084 0.95094 1.86595 1.74658 1.04106 1.03632 1.23573 1.03332 0.96315 1.00362 0.85049 1.21962 0.93756 1.03470 0.99930 1.20016 0.79431 0.84017 0.85879 1.90678 1.64549 1.72462 1.18148 1.48032 1.44347 1.28078 1.12178 1.22071 1.03181 1.02036 0.79679 1.18860 0.91099 0.82893 0.93264 1.21682 1.02788 0.95160 1.38680 0.92895 1.25818 1.02422 0.94784 0.95921 1.70042 1.39045 1.02596 1.44823 0.85437 0.79184 0.78031 0.78308 1.18874 1.20549 1.19876 1.44955 1.46377 1.13411 1.03518 1.59659 1.41460 1.26058 0.95022 0.87983 0.92965 0.93479 0.92416 0.92934 0.86556 0.86632 0.89438 0.89269 0.91844 0.90324 0.90768 0.89549 0.95143 0.97770 0.92361 0.79841 0.78628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.77 10.70 -148.98 -1.59 -6.37 16 3 C 0.07 0.75 5.92 71.98 0.43 1.17 16 4 C -0.03 -0.28 6.06 29.85 0.18 -0.09 16 5 C 0.16 3.10 7.38 137.63 1.02 4.12 16 6 N -0.30 -7.86 12.18 -49.53 -0.60 -8.47 16 7 N -0.31 -8.88 9.75 -56.85 -0.55 -9.43 16 8 C 0.17 4.59 7.88 179.55 1.42 6.01 16 9 S 0.08 2.53 20.96 -56.49 -1.18 1.34 16 10 C -0.10 -3.30 1.96 29.85 0.06 -3.24 16 11 H 0.13 3.89 6.31 -2.39 -0.02 3.87 16 12 C -0.13 -3.53 8.93 71.98 0.64 -2.89 16 13 C 0.52 22.11 6.85 87.66 0.60 22.71 16 14 O -0.58 -29.86 15.62 -3.02 -0.05 -29.90 16 15 N -0.60 -25.50 2.86 -851.13 -2.43 -27.93 16 16 C 0.07 2.23 9.56 127.77 1.22 3.45 16 17 C 0.26 13.97 5.16 85.63 0.44 14.41 16 18 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 19 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 22 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 26 N -0.30 -5.94 3.81 -185.32 -0.71 -6.65 16 27 N -0.59 -7.15 10.41 37.02 0.39 -6.77 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 0.65 7.40 -2.39 -0.02 0.63 16 35 H 0.09 2.07 6.94 -2.39 -0.02 2.05 16 36 H 0.09 2.31 5.91 -2.39 -0.01 2.30 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.98 7.66 -2.39 -0.02 1.96 16 39 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 40 H 0.09 2.21 5.94 -2.38 -0.01 2.20 16 41 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 42 H 0.00 0.26 7.42 -2.39 -0.02 0.24 16 43 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.38 2.93 9.21 -210.56 -1.94 1.00 16 45 H 0.39 2.21 8.26 -210.55 -1.74 0.47 16 Total: -1.00 -80.34 390.30 0.89 -79.44 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.64 Total: 6.14 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 7.95 Total: 16.87 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -3.62 Total: -114.70 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.64 Total: -36.27 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.18 Total: 1.34 kcal Total: -80.34 0.89 -79.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647093436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.506 kcal (2) G-P(sol) polarization free energy of solvation -80.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds