Wall clock time and date at job start Wed Apr 1 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47364 * 2 1 4 4 C 1.50694 * 109.46830 * 239.99900 * 2 1 3 5 5 H 1.08008 * 120.00236 * 240.00205 * 4 2 1 6 6 C 1.37873 * 120.00286 * 60.00354 * 4 2 1 7 7 N 1.31521 * 120.00132 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00288 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46891 * 90.00217 * 8 6 4 10 10 H 1.48501 * 109.47177 * 209.99939 * 8 6 4 11 11 H 1.48494 * 109.47237 * 330.00265 * 8 6 4 12 12 N 1.46500 * 109.46616 * 120.00259 * 2 1 3 13 13 C 1.46496 * 120.00518 * 60.00020 * 12 2 1 14 14 S 1.65607 * 119.99853 * 239.99447 * 12 2 1 15 15 O 1.42096 * 106.40158 * 156.46019 * 14 12 2 16 16 O 1.42105 * 106.39515 * 23.54391 * 14 12 2 17 17 N 1.65601 * 107.21921 * 270.00703 * 14 12 2 18 18 C 1.47426 * 125.65082 * 90.02189 * 17 14 12 19 19 C 1.54912 * 104.83261 * 203.86262 * 18 17 14 20 20 C 1.55155 * 101.57968 * 322.99067 * 19 18 17 21 21 C 1.47024 * 125.64411 * 269.71176 * 17 14 12 22 22 H 1.09002 * 109.88101 * 59.79050 * 21 17 14 23 23 C 1.50702 * 109.88340 * 298.62292 * 21 17 14 24 24 N 1.30512 * 126.34527 * 314.69500 * 23 21 17 25 25 N 1.28604 * 109.67176 * 179.82382 * 24 23 21 26 26 C 1.30514 * 109.66633 * 0.44358 * 25 24 23 27 27 N 1.35483 * 107.31380 * 359.73181 * 26 25 24 28 28 C 1.46503 * 126.98350 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.47566 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47015 * 300.00091 * 1 2 3 31 31 H 1.09005 * 109.47133 * 59.99989 * 1 2 3 32 32 H 0.96993 * 120.00400 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47007 * 269.99690 * 13 12 2 34 34 H 1.09005 * 109.46718 * 29.99508 * 13 12 2 35 35 H 1.08997 * 109.47060 * 149.99569 * 13 12 2 36 36 H 1.09002 * 110.36518 * 322.69831 * 18 17 14 37 37 H 1.08995 * 110.36673 * 84.90941 * 18 17 14 38 38 H 1.08997 * 111.00012 * 81.06132 * 19 18 17 39 39 H 1.08989 * 111.00345 * 204.91519 * 19 18 17 40 40 H 1.08999 * 110.71965 * 153.86238 * 20 19 18 41 41 H 1.09000 * 110.72417 * 276.96258 * 20 19 18 42 42 H 1.08000 * 126.34064 * 179.73263 * 26 25 24 43 43 H 1.09005 * 109.47099 * 270.00303 * 28 27 26 44 44 H 1.08999 * 109.47176 * 29.99692 * 28 27 26 45 45 H 1.09003 * 109.47023 * 150.00109 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6307 -1.7568 -3.7120 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1140 2.2863 15 8 2.8227 -0.5647 3.5259 16 8 2.6903 1.4972 2.1192 17 7 4.5437 -0.1043 1.8180 18 6 5.2968 0.7708 0.9013 19 6 6.4125 -0.1319 0.3182 20 6 6.7814 -1.0042 1.5472 21 6 5.4229 -1.1997 2.2527 22 1 4.9905 -2.1582 1.9656 23 6 5.6089 -1.1452 3.7472 24 7 5.8629 -0.0796 4.4567 25 7 5.9557 -0.3987 5.6991 26 6 5.7745 -1.6838 5.8373 27 7 5.5492 -2.1942 4.6026 28 6 5.2937 -3.5959 4.2617 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7088 1.1613 -3.4844 33 1 0.7375 -2.1444 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4628 -2.5819 1.9863 36 1 4.6475 1.1339 0.1046 37 1 5.7307 1.6084 1.4473 38 1 6.0313 -0.7468 -0.4970 39 1 7.2652 0.4629 -0.0088 40 1 7.1928 -1.9625 1.2304 41 1 7.4837 -0.4800 2.1954 42 1 5.7995 -2.2376 6.7641 43 1 6.2392 -4.0983 4.0570 44 1 4.7942 -4.0877 5.0964 45 1 4.6576 -3.6447 3.3778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647187638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:15 Heat of formation + Delta-G solvation = -6.057008 kcal Electronic energy + Delta-G solvation = -30615.097575 eV Core-core repulsion = 26602.514708 eV Total energy + Delta-G solvation = -4012.582867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.03867 -39.52091 -38.43874 -37.92382 -36.96678 -35.92564 -34.50269 -32.46746 -31.92080 -30.96343 -29.31868 -28.31878 -27.27002 -27.03339 -24.33336 -23.28683 -22.69321 -22.36364 -21.76113 -19.86803 -18.90752 -18.57917 -18.34746 -17.93361 -17.37937 -17.11773 -16.72565 -16.36405 -15.87553 -15.41376 -15.26556 -15.01778 -14.75314 -14.50003 -14.28817 -14.22342 -13.80077 -13.68945 -13.49708 -13.44813 -13.32321 -13.21486 -13.00654 -12.85003 -12.76256 -12.64977 -12.62481 -12.42339 -12.22938 -12.13459 -12.08232 -11.90881 -11.67338 -11.30204 -11.20800 -11.00614 -10.48214 -10.38630 -10.05264 -9.69930 -8.05869 -6.21834 -0.48326 0.88779 1.50341 1.51603 1.61098 1.64856 1.88455 2.01170 2.48511 2.54658 3.06914 3.23084 3.26292 3.55384 3.72713 3.85132 3.87480 3.95823 4.09458 4.23084 4.44437 4.49491 4.57659 4.62135 4.68373 4.73096 4.75019 4.87547 4.91074 4.91499 4.93817 4.98478 5.02014 5.11683 5.19704 5.21596 5.22568 5.33937 5.42533 5.61235 5.68929 5.84938 6.02967 6.08636 6.28117 6.87271 7.48349 7.79397 8.99303 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.004535 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.279271 B = 6172.348178 C = 6658.251483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.016 0.984 4 C -0.524 4.524 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.256 1.256 12 N -0.993 5.993 13 C 0.102 3.898 14 S 2.802 3.198 15 O -0.998 6.998 16 O -1.021 7.021 17 N -1.002 6.002 18 C 0.114 3.886 19 C -0.113 4.113 20 C -0.102 4.102 21 C 0.234 3.766 22 H 0.115 0.885 23 C 0.163 3.837 24 N -0.334 5.334 25 N -0.355 5.355 26 C 0.162 3.838 27 N -0.464 5.464 28 C 0.058 3.942 29 H 0.047 0.953 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.263 0.737 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.262 0.738 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.496 -15.258 7.835 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.034 0.966 4 C -0.563 4.563 5 H 0.095 0.905 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.219 1.219 11 H -0.180 1.180 12 N -0.836 5.836 13 C -0.043 4.043 14 S 2.814 3.186 15 O -0.981 6.981 16 O -1.005 7.005 17 N -0.841 5.841 18 C -0.011 4.011 19 C -0.152 4.152 20 C -0.142 4.142 21 C 0.124 3.876 22 H 0.133 0.867 23 C -0.108 4.108 24 N -0.174 5.174 25 N -0.194 5.194 26 C -0.127 4.127 27 N -0.154 5.154 28 C -0.083 4.083 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.278 0.722 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.259 -13.219 8.868 20.091 hybrid contribution -0.639 -1.025 -1.124 1.650 sum 11.620 -14.244 7.744 19.947 Atomic orbital electron populations 1.21961 0.98054 1.00170 0.99697 1.18430 0.91817 0.91241 0.81690 0.96570 1.21557 1.31592 1.13114 0.90012 0.90524 1.25742 0.95132 0.95509 1.02024 1.70039 1.37552 1.24186 1.24327 0.85499 0.79282 0.77952 0.78529 1.20434 1.21943 1.17984 1.57722 1.64375 1.22729 1.38728 1.21397 1.00180 0.80232 1.02508 1.00998 0.72371 0.72455 0.72761 1.93496 1.86255 1.76164 1.42206 1.93512 1.84583 1.35188 1.87250 1.58901 1.27355 1.37369 1.60457 1.22130 0.94411 0.93328 0.91215 1.22762 0.97448 0.97672 0.97293 1.22675 0.92474 1.03026 0.96010 1.19885 0.94068 0.91356 0.82274 0.86702 1.25362 1.03764 0.84658 0.97034 1.74052 1.19803 1.25158 0.98376 1.74083 1.21379 1.13057 1.10846 1.27182 1.01922 0.92188 0.91391 1.46334 1.51256 1.11122 1.06678 1.22611 1.05240 0.75237 1.05212 0.93361 0.96981 0.91033 0.92826 0.93404 0.89710 0.90700 0.91889 0.92044 0.89295 0.87483 0.85880 0.90676 0.72214 0.86768 0.86487 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 8.97 71.98 0.65 -6.11 16 2 C 0.27 13.40 2.62 44.24 0.12 13.52 16 3 H 0.02 0.94 6.91 -2.39 -0.02 0.92 16 4 C -0.52 -25.41 7.99 25.60 0.20 -25.20 16 5 H 0.08 3.43 7.33 -2.91 -0.02 3.41 16 6 C 0.02 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -50.53 11.32 21.45 0.24 -50.28 16 8 Si 0.96 39.20 29.54 68.60 2.03 41.23 16 9 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 12 N -0.99 -40.98 3.12 -520.48 -1.62 -42.61 16 13 C 0.10 3.28 9.28 127.77 1.19 4.47 16 14 S 2.80 119.77 6.26 -56.49 -0.35 119.42 16 15 O -1.00 -42.73 15.51 -128.00 -1.99 -44.71 16 16 O -1.02 -53.44 16.29 -128.00 -2.08 -55.52 16 17 N -1.00 -34.42 3.45 -488.10 -1.68 -36.10 16 18 C 0.11 3.64 6.98 86.86 0.61 4.25 16 19 C -0.11 -2.39 7.09 31.99 0.23 -2.17 16 20 C -0.10 -1.91 6.46 31.78 0.21 -1.70 16 21 C 0.23 5.93 3.46 44.60 0.15 6.08 16 22 H 0.12 2.22 6.93 -2.39 -0.02 2.20 16 23 C 0.16 4.74 5.23 137.98 0.72 5.46 16 24 N -0.33 -12.43 12.21 -50.16 -0.61 -13.04 16 25 N -0.35 -12.23 12.21 -60.00 -0.73 -12.96 16 26 C 0.16 3.73 12.74 180.12 2.30 6.02 16 27 N -0.46 -9.87 3.15 -542.07 -1.71 -11.58 16 28 C 0.06 0.52 11.00 127.77 1.41 1.92 16 29 H 0.05 2.12 7.67 -2.38 -0.02 2.11 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 3.81 6.07 -2.38 -0.01 3.79 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 2.67 7.02 -2.38 -0.02 2.66 16 35 H 0.07 1.89 7.79 -2.39 -0.02 1.87 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 42 H 0.26 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.09 0.82 7.08 -2.39 -0.02 0.81 16 Total: -1.00 -82.79 375.80 0.70 -82.09 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.99 Total: 16.30 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 8.22 Total: 7.77 kcal Atomic # 7 Polarization: -160.46 SS G_CDS: -6.12 Total: -166.57 kcal Atomic # 8 Polarization: -96.16 SS G_CDS: -4.07 Total: -100.23 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 119.77 SS G_CDS: -0.35 Total: 119.42 kcal Total: -82.79 0.70 -82.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647187638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.036 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds