Wall clock time and date at job start Wed Apr 1 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47178 * 2 1 4 4 C 1.46506 * 119.99986 * 274.99909 * 3 2 1 5 5 C 1.50694 * 109.47279 * 280.12406 * 4 3 2 6 6 H 1.08000 * 119.99689 * 4.15206 * 5 4 3 7 7 C 1.37880 * 120.00023 * 184.15761 * 5 4 3 8 8 N 1.31508 * 119.99987 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99827 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47263 * 89.99906 * 9 7 5 11 11 H 1.48503 * 109.46787 * 210.00032 * 9 7 5 12 12 H 1.48504 * 109.47092 * 329.99479 * 9 7 5 13 13 S 1.65595 * 120.00238 * 95.00008 * 3 2 1 14 14 O 1.42097 * 106.40030 * 330.08513 * 13 3 2 15 15 O 1.42098 * 106.40330 * 197.16612 * 13 3 2 16 16 N 1.65599 * 107.21863 * 83.62215 * 13 3 2 17 17 C 1.46504 * 119.99725 * 65.41450 * 16 13 3 18 18 C 1.53002 * 109.47116 * 165.64238 * 17 16 13 19 19 C 1.52996 * 109.46888 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46674 * 180.02562 * 19 18 17 21 21 C 1.38406 * 119.99781 * 180.02562 * 20 19 18 22 22 N 1.32495 * 119.21783 * 359.45045 * 21 20 19 23 23 C 1.32282 * 120.74054 * 179.71829 * 22 21 20 24 24 C 1.38596 * 119.19466 * 0.54946 * 23 22 21 25 25 C 1.38602 * 118.56090 * 359.72704 * 24 23 22 26 26 N 1.32271 * 119.19847 * 0.02562 * 25 24 23 27 27 H 1.09007 * 109.47523 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47260 * 300.00177 * 1 2 3 29 29 H 1.09003 * 109.47365 * 60.00182 * 1 2 3 30 30 H 1.08999 * 109.46866 * 240.00170 * 2 1 3 31 31 H 1.08994 * 109.47187 * 119.99867 * 2 1 3 32 32 H 1.09004 * 109.46734 * 40.12056 * 4 3 2 33 33 H 1.09002 * 109.47034 * 160.11767 * 4 3 2 34 34 H 0.97001 * 120.00206 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00518 * 245.40635 * 16 13 3 36 36 H 1.08994 * 109.47448 * 45.63976 * 17 16 13 37 37 H 1.09000 * 109.46632 * 285.63946 * 17 16 13 38 38 H 1.09002 * 109.47024 * 59.99890 * 18 17 16 39 39 H 1.08994 * 109.47034 * 300.00108 * 18 17 16 40 40 H 1.08994 * 109.47233 * 60.00010 * 19 18 17 41 41 H 1.09002 * 109.47583 * 299.99847 * 19 18 17 42 42 H 0.96995 * 120.00387 * 359.72045 * 20 19 18 43 43 H 1.07999 * 120.39842 * 180.29649 * 23 22 21 44 44 H 1.08007 * 120.72007 * 179.74971 * 24 23 22 45 45 H 1.08007 * 120.40398 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4375 1.6934 -1.9436 6 1 4.0482 0.9128 -1.5144 7 6 3.8283 2.3100 -3.1133 8 7 3.0844 3.2601 -3.6361 9 14 5.4145 1.7956 -3.9554 10 1 5.1313 0.7014 -4.9186 11 1 5.9890 2.9572 -4.6807 12 1 6.3841 1.3196 -2.9363 13 16 2.4122 2.1202 1.4286 14 8 1.5765 1.5431 2.4225 15 8 2.4522 3.5152 1.1611 16 7 3.9617 1.6709 1.8020 17 6 5.0729 2.0915 0.9450 18 6 6.3966 1.8653 1.6783 19 6 7.5571 2.3039 0.7830 20 7 8.8245 2.0867 1.4851 21 6 10.0209 2.4119 0.8699 22 7 10.0025 2.9084 -0.3584 23 6 11.1277 3.2347 -0.9727 24 6 12.3350 3.0408 -0.3202 25 6 12.3182 2.5142 0.9618 26 7 11.1577 2.2138 1.5209 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3118 1.8787 -1.9111 33 1 2.1834 3.1802 -1.0656 34 1 3.3592 3.6937 -4.4592 35 1 4.1336 1.1295 2.5882 36 1 4.9667 3.1494 0.7051 37 1 5.0631 1.5075 0.0247 38 1 6.5029 0.8073 1.9182 39 1 6.4064 2.4492 2.5986 40 1 7.4509 3.3617 0.5428 41 1 7.5471 1.7196 -0.1371 42 1 8.8249 1.7192 2.3827 43 1 11.1060 3.6435 -1.9721 44 1 13.2686 3.2948 -0.8001 45 1 13.2416 2.3512 1.4979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661190815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:24 Heat of formation + Delta-G solvation = -26.778058 kcal Electronic energy + Delta-G solvation = -28197.532475 eV Core-core repulsion = 24184.051077 eV Total energy + Delta-G solvation = -4013.481399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94995 -37.13103 -36.61044 -36.02937 -35.19604 -35.07154 -33.71599 -32.71346 -31.81590 -29.92061 -29.55458 -26.63609 -25.28631 -24.43555 -23.16148 -22.80138 -21.82011 -21.51293 -18.82745 -18.21716 -17.50601 -17.06752 -16.80480 -16.44994 -15.84138 -15.79938 -15.72828 -15.18699 -14.87023 -14.63640 -14.44575 -14.11744 -13.72394 -13.50334 -13.32274 -13.05925 -12.92071 -12.42761 -12.05570 -11.97439 -11.72089 -11.54226 -11.50033 -11.30253 -11.28506 -11.15098 -11.06611 -10.99893 -10.92538 -10.91993 -10.53008 -10.39936 -10.36627 -10.00936 -9.80131 -9.19395 -9.00718 -8.50489 -8.18888 -8.05796 -6.11720 -4.18726 1.07379 1.09995 1.30072 2.77165 3.25377 3.34031 3.34368 3.54973 3.83434 4.10018 4.17501 4.35581 4.51409 4.68131 4.91819 5.02197 5.03335 5.11391 5.12453 5.22392 5.25340 5.41333 5.63287 5.66524 5.75744 5.78443 5.81516 5.92502 5.98432 6.11962 6.20003 6.27514 6.34943 6.47382 6.68054 6.69903 6.72025 7.00388 7.27043 7.35298 7.38648 7.45415 7.68834 7.85134 8.15201 8.24967 8.85431 9.47341 10.96115 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.003334 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.000667 B = 8395.862551 C =10218.078820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.270 1.270 13 S 2.786 3.214 14 O -1.001 7.001 15 O -0.978 6.978 16 N -1.131 6.131 17 C 0.121 3.879 18 C -0.136 4.136 19 C 0.134 3.866 20 N -0.696 5.696 21 C 0.564 3.436 22 N -0.563 5.563 23 C 0.194 3.806 24 C -0.300 4.300 25 C 0.190 3.810 26 N -0.576 5.576 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.412 0.588 43 H 0.166 0.834 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.967 -4.143 8.275 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.580 4.580 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.194 1.194 13 S 2.794 3.206 14 O -0.985 6.985 15 O -0.962 6.962 16 N -0.890 5.890 17 C -0.005 4.005 18 C -0.176 4.176 19 C 0.010 3.990 20 N -0.332 5.332 21 C 0.207 3.793 22 N -0.286 5.286 23 C 0.026 3.974 24 C -0.326 4.326 25 C 0.022 3.978 26 N -0.299 5.299 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.249 0.751 43 H 0.183 0.817 44 H 0.159 0.841 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.256 -3.506 8.790 14.705 hybrid contribution 2.134 -0.682 -0.663 2.337 sum 13.390 -4.188 8.127 16.214 Atomic orbital electron populations 1.22213 0.96970 1.01304 1.02500 1.20938 0.93650 0.82901 1.01938 1.57718 1.78563 1.22939 1.24106 1.19224 0.97230 0.92590 0.78887 1.21506 1.07323 1.20709 1.08414 0.91830 1.24932 0.96995 0.94680 0.97017 1.69928 1.37964 1.24161 1.20392 0.86649 0.83588 0.78185 0.79935 1.20826 1.21064 1.19440 1.01719 0.72560 0.73720 0.72620 1.93549 1.65451 1.79825 1.59706 1.93579 1.86498 1.30920 1.85162 1.55990 1.25267 1.69974 1.37733 1.21245 0.83771 1.02105 0.93407 1.21965 0.93975 1.02279 0.99348 1.21316 0.79944 1.02440 0.95332 1.44194 1.01870 1.68189 1.18919 1.19367 0.86371 0.87656 0.85894 1.68022 1.32104 1.18858 1.09624 1.22993 0.86797 0.88952 0.98681 1.22502 1.00660 1.10552 0.98873 1.22866 0.95080 0.88233 0.91635 1.67891 0.98164 1.25307 1.38555 0.92489 0.92475 0.92097 0.90178 0.92254 0.94827 0.92585 0.92563 0.76273 0.89921 0.89172 0.90882 0.90898 0.90707 0.90573 0.75091 0.81674 0.84063 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.13 2.23 6.02 -4.05 -0.02 2.20 16 3 N -0.99 -19.63 2.84 -115.67 -0.33 -19.96 16 4 C 0.24 5.81 5.46 -5.19 -0.03 5.78 16 5 C -0.54 -13.37 8.51 -34.44 -0.29 -13.66 16 6 H 0.06 1.49 6.47 -52.49 -0.34 1.15 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 9 Si 0.89 20.12 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 13 S 2.79 53.23 6.07 -107.50 -0.65 52.58 16 14 O -1.00 -19.85 17.17 -57.17 -0.98 -20.83 16 15 O -0.98 -22.32 16.01 -57.17 -0.92 -23.23 16 16 N -1.13 -17.05 6.06 -10.61 -0.06 -17.11 16 17 C 0.12 1.87 6.21 -4.04 -0.03 1.84 16 18 C -0.14 -1.58 5.47 -26.73 -0.15 -1.72 16 19 C 0.13 1.75 5.65 -4.04 -0.02 1.73 16 20 N -0.70 -8.51 5.70 -62.31 -0.36 -8.86 16 21 C 0.56 7.76 8.43 -322.81 -2.72 5.04 16 22 N -0.56 -8.01 9.59 -13.93 -0.13 -8.15 16 23 C 0.19 2.11 11.30 -17.23 -0.19 1.91 16 24 C -0.30 -2.61 10.16 -39.31 -0.40 -3.01 16 25 C 0.19 1.80 11.30 -17.23 -0.19 1.61 16 26 N -0.58 -7.20 10.46 -13.93 -0.15 -7.34 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 29 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 31 H 0.06 0.87 7.78 -51.93 -0.40 0.47 16 32 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.06 1.50 6.77 -51.93 -0.35 1.14 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.41 4.86 8.65 -34.47 -0.30 4.56 16 36 H 0.08 1.42 7.75 -51.93 -0.40 1.02 16 37 H 0.09 1.54 5.86 -51.93 -0.30 1.24 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.41 4.21 8.59 -40.82 -0.35 3.86 16 43 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -33.43 389.56 -12.40 -45.83 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.64 Total: 9.05 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.77 Total: 1.08 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -0.29 Total: -85.43 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.90 Total: -44.07 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.65 Total: 52.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.43 -12.40 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661190815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.048 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds