Wall clock time and date at job start Wed Apr 1 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 5 5 N 1.46895 * 109.47398 * 65.00143 * 4 2 1 6 6 C 1.46894 * 111.00198 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47383 * 180.02562 * 6 5 4 8 8 N 1.30734 * 125.53593 * 0.02562 * 7 6 5 9 9 C 1.34444 * 109.94636 * 179.97438 * 8 7 6 10 10 O 1.21724 * 125.92604 * 180.02562 * 9 8 7 11 11 N 1.34999 * 108.14805 * 359.97438 * 9 8 7 12 12 C 1.46504 * 126.85795 * 179.97438 * 11 9 8 13 13 N 1.35152 * 125.54307 * 179.71814 * 7 6 5 14 14 H 0.97006 * 126.64994 * 0.03385 * 13 7 6 15 15 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 16 16 N 1.46499 * 109.46708 * 294.99623 * 15 2 1 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 2 18 18 O 1.21283 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.72962 * 17 16 15 20 20 S 1.81008 * 109.46759 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99946 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99996 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00252 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00327 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99735 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47351 * 90.00094 * 25 23 21 27 27 H 1.48496 * 109.47299 * 210.00069 * 25 23 21 28 28 H 1.48507 * 109.47281 * 330.00181 * 25 23 21 29 29 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 30 30 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 32 32 H 1.09001 * 109.47203 * 185.00287 * 4 2 1 33 33 H 1.08997 * 109.47065 * 304.99977 * 4 2 1 34 34 H 1.00909 * 110.99952 * 303.95412 * 5 4 2 35 35 H 1.09005 * 109.47021 * 299.99748 * 6 5 4 36 36 H 1.09004 * 109.47475 * 59.99745 * 6 5 4 37 37 H 1.08999 * 109.47342 * 0.02721 * 12 11 9 38 38 H 1.09000 * 109.46575 * 120.02629 * 12 11 9 39 39 H 1.09002 * 109.46937 * 240.02375 * 12 11 9 40 40 H 1.08998 * 109.46692 * 175.00125 * 15 2 1 41 41 H 1.08994 * 109.47584 * 54.99989 * 15 2 1 42 42 H 0.97005 * 120.00261 * 0.02562 * 16 15 2 43 43 H 1.09001 * 109.46809 * 299.99238 * 19 17 16 44 44 H 1.08993 * 109.47525 * 59.99679 * 19 17 16 45 45 H 0.97000 * 120.00223 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6515 0.0374 -2.4456 6 6 2.1248 -0.6271 -3.6672 7 6 1.7089 0.1787 -4.8709 8 7 1.0322 1.2969 -4.8398 9 6 0.8339 1.7478 -6.0908 10 8 0.2389 2.7645 -6.3976 11 7 1.4101 0.8781 -6.9476 12 6 1.4388 0.9730 -8.4092 13 7 1.9799 -0.1340 -6.1575 14 1 2.4710 -0.9083 -6.4741 15 6 2.0400 -0.7214 1.2492 16 7 1.6524 0.0353 2.4423 17 6 1.9963 -0.4132 3.6659 18 8 2.6271 -1.4429 3.7791 19 6 1.6029 0.3683 4.8929 20 16 2.2062 -0.4851 6.3708 21 6 1.6239 0.6147 7.6182 22 1 1.0748 1.5026 7.3418 23 6 1.8709 0.3399 8.9561 24 7 1.4355 1.1612 9.8880 25 14 2.8212 -1.1956 9.4342 26 1 4.2721 -0.8833 9.4873 27 1 2.3666 -1.6639 10.7680 28 1 2.5806 -2.2603 8.4272 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 0.6528 0.1793 -2.4753 35 1 3.2117 -0.7050 -3.6405 36 1 1.6904 -1.6249 -3.7297 37 1 0.9133 1.8741 -8.7253 38 1 2.4732 1.0172 -8.7501 39 1 0.9515 0.0982 -8.8397 40 1 3.1262 -0.7996 1.2055 41 1 1.6054 -1.7199 1.2951 42 1 1.1482 0.8590 2.3517 43 1 2.0416 1.3650 4.8449 44 1 0.5171 0.4510 4.9384 45 1 1.6084 0.9693 10.8230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666515529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:49 Heat of formation + Delta-G solvation = -12.761123 kcal Electronic energy + Delta-G solvation = -25833.338831 eV Core-core repulsion = 21820.465252 eV Total energy + Delta-G solvation = -4012.873579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.32315 -40.66903 -38.79275 -38.26461 -36.32122 -35.02850 -34.65460 -33.46316 -32.53042 -30.92075 -29.13370 -27.88607 -27.47900 -26.79572 -24.62137 -22.83834 -22.09709 -21.75078 -21.10722 -19.83662 -19.42369 -17.91549 -17.78107 -17.41783 -17.34794 -17.06479 -16.77244 -16.62949 -16.58186 -15.70457 -15.68281 -15.28836 -15.19584 -14.88795 -14.53552 -14.47411 -14.27570 -13.84379 -13.78827 -13.61919 -13.45331 -13.31858 -13.18413 -12.98533 -12.92010 -12.64706 -12.27008 -11.97783 -11.82467 -11.76382 -11.66076 -11.15176 -11.12365 -11.01061 -10.95027 -10.51666 -10.05073 -9.66807 -9.29419 -8.97037 -8.49616 -6.20374 0.33110 0.36567 1.02037 1.33487 1.48981 1.58985 1.62138 2.25568 2.28600 2.30060 2.50979 2.74567 2.88751 3.12401 3.41377 3.87802 3.96048 4.00395 4.04885 4.09018 4.12936 4.26660 4.35862 4.42676 4.50972 4.57644 4.62670 4.64625 4.69806 4.81304 4.84541 4.87027 4.96092 5.05803 5.12470 5.34621 5.44860 5.55151 5.72416 5.98247 6.13290 6.26961 6.42208 6.52343 6.93031 6.95523 7.06644 7.24664 8.62908 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.039881 B = 0.001375 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.915122 B =20364.787028 C =20875.800956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.085 0.915 4 C 0.074 3.926 5 N -0.691 5.691 6 C 0.129 3.871 7 C 0.408 3.592 8 N -0.599 5.599 9 C 0.612 3.388 10 O -0.600 6.600 11 N -0.445 5.445 12 C 0.100 3.900 13 N -0.468 5.468 14 H 0.470 0.530 15 C 0.127 3.873 16 N -0.711 5.711 17 C 0.535 3.465 18 O -0.563 6.563 19 C -0.114 4.114 20 S -0.173 6.173 21 C -0.531 4.531 22 H 0.060 0.940 23 C 0.046 3.954 24 N -0.918 5.918 25 Si 0.916 3.084 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.235 1.235 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.352 0.648 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.414 0.586 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -9.688 -39.975 41.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.055 4.055 5 N -0.325 5.325 6 C -0.002 4.002 7 C 0.133 3.867 8 N -0.350 5.350 9 C 0.310 3.690 10 O -0.477 6.477 11 N -0.273 5.273 12 C -0.040 4.040 13 N -0.201 5.201 14 H 0.322 0.678 15 C 0.003 3.997 16 N -0.365 5.365 17 C 0.320 3.680 18 O -0.442 6.442 19 C -0.265 4.265 20 S 0.053 5.947 21 C -0.679 4.679 22 H 0.079 0.921 23 C -0.160 4.160 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.184 1.184 28 H -0.159 1.159 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.251 0.749 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.856 -9.723 -39.535 40.895 hybrid contribution -1.046 0.356 -0.343 1.157 sum 2.810 -9.367 -39.878 41.059 Atomic orbital electron populations 1.21901 0.94473 1.02261 1.02370 1.21244 0.96472 1.00824 0.92459 0.89629 1.21856 1.01761 0.94649 0.87228 1.60128 1.21739 1.50203 1.00440 1.20886 1.04028 0.93506 0.81794 1.24441 0.86362 0.90071 0.85804 1.71785 1.28126 1.14510 1.20549 1.18655 0.81922 0.84480 0.83939 1.90901 1.48960 1.26529 1.81273 1.49518 1.52622 1.18441 1.06727 1.22184 1.05236 1.05294 0.71329 1.44799 1.51971 1.20820 1.02528 0.67761 1.21424 1.00028 0.95204 0.83048 1.45778 1.57784 1.28421 1.04514 1.19879 0.78627 0.84714 0.84742 1.90681 1.40889 1.25726 1.86885 1.23294 1.05918 1.03112 0.94161 1.84643 1.75480 1.35660 0.98906 1.22487 1.41338 1.10597 0.93443 0.92127 1.25577 0.95486 0.99608 0.95294 1.70021 1.45887 1.38332 1.01386 0.85849 0.79762 0.80776 0.79867 1.18660 1.18368 1.15931 0.91534 0.92266 0.92767 0.89211 0.92847 0.82718 0.84157 0.87406 0.88986 0.88336 0.88213 0.91722 0.91845 0.74874 0.87047 0.86982 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.84 71.98 0.64 -1.06 16 2 C -0.09 -0.99 2.63 -10.79 -0.03 -1.02 16 3 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.07 0.46 5.14 86.30 0.44 0.90 16 5 N -0.69 -5.17 6.25 -517.94 -3.24 -8.41 16 6 C 0.13 0.10 6.31 85.56 0.54 0.64 16 7 C 0.41 3.33 7.97 138.03 1.10 4.43 16 8 N -0.60 -12.39 10.70 -316.04 -3.38 -15.77 16 9 C 0.61 15.01 8.97 179.09 1.61 16.62 16 10 O -0.60 -20.74 17.69 -4.42 -0.08 -20.82 16 11 N -0.44 -5.33 4.06 -499.99 -2.03 -7.35 16 12 C 0.10 0.42 11.57 127.77 1.48 1.90 16 13 N -0.47 -1.47 7.36 -50.36 -0.37 -1.84 16 14 H 0.47 -3.32 8.96 -213.07 -1.91 -5.23 16 15 C 0.13 2.17 5.06 86.38 0.44 2.60 16 16 N -0.71 -15.65 5.28 -463.06 -2.45 -18.10 16 17 C 0.54 17.77 7.85 87.65 0.69 18.46 16 18 O -0.56 -23.23 15.86 -3.04 -0.05 -23.28 16 19 C -0.11 -4.25 6.16 71.24 0.44 -3.81 16 20 S -0.17 -8.72 18.55 -56.49 -1.05 -9.77 16 21 C -0.53 -31.04 10.04 67.95 0.68 -30.36 16 22 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 23 C 0.05 2.68 5.50 84.86 0.47 3.15 16 24 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 25 Si 0.92 44.89 27.74 68.60 1.90 46.80 16 26 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 29 H 0.07 0.72 6.68 -2.38 -0.02 0.70 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.68 7.18 -2.39 -0.02 0.67 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.35 3.47 6.82 -89.69 -0.61 2.86 16 35 H 0.14 -0.57 8.14 -2.38 -0.02 -0.59 16 36 H 0.11 -0.59 8.14 -2.38 -0.02 -0.61 16 37 H 0.09 0.77 7.80 -2.39 -0.02 0.75 16 38 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.41 6.98 7.65 -92.70 -0.71 6.27 16 43 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 45 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -96.18 393.59 -4.17 -100.35 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.23 Total: 1.62 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 8.49 Total: 12.44 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -11.16 Total: -107.34 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.13 Total: -44.10 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -96.18 -4.17 -100.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666515529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.587 kcal (2) G-P(sol) polarization free energy of solvation -96.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds