Wall clock time and date at job start Wed Apr 1 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47151 * 2 1 4 4 C 1.53001 * 109.47028 * 120.00129 * 2 1 3 5 5 H 1.08999 * 109.47161 * 57.82777 * 4 2 1 6 6 C 1.53001 * 109.47094 * 297.82635 * 4 2 1 7 7 N 1.46496 * 109.47049 * 184.99968 * 6 4 2 8 8 C 1.34780 * 120.00064 * 180.02562 * 7 6 4 9 9 O 1.21287 * 119.99430 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00176 * 180.02562 * 8 7 6 11 11 S 1.81006 * 109.47071 * 179.97438 * 10 8 7 12 12 C 1.76200 * 100.00010 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99843 * 0.02562 * 12 11 10 14 14 C 1.38793 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99718 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00165 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47299 * 90.00021 * 16 14 12 18 18 H 1.48505 * 109.46976 * 209.99816 * 16 14 12 19 19 H 1.48497 * 109.47105 * 329.99643 * 16 14 12 20 20 N 1.46897 * 109.46971 * 177.82768 * 4 2 1 21 21 C 1.46901 * 111.00218 * 271.99699 * 20 4 2 22 22 C 1.50700 * 109.46995 * 174.89522 * 21 20 4 23 23 N 1.30884 * 125.91310 * 275.02250 * 22 21 20 24 24 C 1.33547 * 109.78222 * 180.02562 * 23 22 21 25 25 O 1.35858 * 125.59018 * 180.02562 * 24 23 22 26 26 N 1.31069 * 108.81969 * 0.02562 * 24 23 22 27 27 N 1.34355 * 125.91028 * 94.72232 * 22 21 20 28 28 H 0.96998 * 126.77509 * 0.02562 * 27 22 21 29 29 H 1.08999 * 109.47354 * 299.99728 * 1 2 3 30 30 H 1.09005 * 109.47301 * 60.00326 * 1 2 3 31 31 H 1.09004 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47218 * 239.99743 * 2 1 3 33 33 H 1.08998 * 109.47206 * 54.07013 * 3 2 1 34 34 H 1.09001 * 109.46928 * 174.07043 * 3 2 1 35 35 H 1.09008 * 109.47055 * 294.06736 * 3 2 1 36 36 H 1.09010 * 109.46496 * 65.00320 * 6 4 2 37 37 H 1.08991 * 109.47165 * 305.00461 * 6 4 2 38 38 H 0.97004 * 120.00236 * 0.02562 * 7 6 4 39 39 H 1.08991 * 109.47444 * 299.99945 * 10 8 7 40 40 H 1.09000 * 109.47046 * 60.00448 * 10 8 7 41 41 H 0.97007 * 120.00319 * 180.02562 * 15 14 12 42 42 H 1.00907 * 110.99989 * 148.04737 * 20 4 2 43 43 H 1.08995 * 109.47217 * 294.90009 * 21 20 4 44 44 H 1.08997 * 109.46726 * 54.90026 * 21 20 4 45 45 H 0.96699 * 114.00467 * 90.00160 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6452 -1.7371 1.2689 6 6 1.5751 0.0308 2.4979 7 7 2.1613 -0.5898 3.6883 8 6 1.8893 -0.0923 4.9110 9 8 1.1595 0.8697 5.0256 10 6 2.4928 -0.7304 6.1356 11 16 1.9427 0.1594 7.6128 12 6 2.7739 -0.7706 8.8574 13 1 3.3953 -1.6093 8.5801 14 6 2.6307 -0.4248 10.1938 15 7 3.2520 -1.1192 11.1235 16 14 1.5564 1.0262 10.6733 17 1 0.1659 0.5582 10.9025 18 1 2.0829 1.6420 11.9178 19 1 1.5665 2.0319 9.5807 20 7 3.5080 -0.7669 1.2233 21 6 3.9851 -1.9546 0.5024 22 6 5.4869 -1.9029 0.3877 23 7 6.1648 -1.2759 -0.5398 24 6 7.4737 -1.4426 -0.3336 25 8 8.4673 -0.9289 -1.1047 26 7 7.6425 -2.1832 0.7346 27 7 6.3616 -2.4878 1.2231 28 1 6.1501 -3.0188 2.0068 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.5925 1.9860 0.8321 34 1 3.1248 1.4442 0.1062 35 1 1.7659 1.9247 -0.9384 36 1 0.4878 -0.0118 2.5639 37 1 1.8948 1.0709 2.4356 38 1 2.7453 -1.3590 3.5967 39 1 2.1739 -1.7707 6.1978 40 1 3.5799 -0.6869 6.0696 41 1 3.1517 -0.8778 12.0577 42 1 3.8874 -0.7344 2.1577 43 1 3.6930 -2.8522 1.0475 44 1 3.5451 -1.9756 -0.4945 45 1 8.7686 -0.0532 -0.8261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667436562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:43 Heat of formation + Delta-G solvation = 14.046817 kcal Electronic energy + Delta-G solvation = -27185.217385 eV Core-core repulsion = 23173.506286 eV Total energy + Delta-G solvation = -4011.711099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63691 -39.91976 -38.41666 -37.80533 -34.74259 -34.26562 -32.71303 -32.49975 -31.39961 -30.09172 -28.00384 -27.38501 -25.83885 -25.58350 -23.72555 -22.93010 -21.51466 -20.72292 -19.53473 -19.00924 -18.15683 -17.91695 -16.96083 -16.70900 -16.55466 -16.08943 -15.72402 -15.16183 -15.07738 -14.88435 -14.54783 -14.45738 -14.03978 -13.74787 -13.60544 -13.40947 -13.23696 -12.87687 -12.84537 -12.44326 -12.34406 -12.22074 -12.14499 -11.76781 -11.35988 -11.30557 -11.15220 -11.05953 -10.78996 -10.65174 -10.55744 -10.32850 -10.04749 -9.91705 -9.66087 -9.15028 -9.08348 -9.05238 -8.57730 -6.99087 -6.34891 -4.07394 0.96900 1.91212 2.18080 2.65167 2.84025 2.97115 3.19149 3.28711 3.45717 3.52222 3.60076 3.92628 4.20665 4.23329 4.27669 4.58585 4.64536 4.70294 4.74106 4.89071 4.97579 5.00993 5.04338 5.16035 5.29828 5.36265 5.45817 5.47481 5.63636 5.64813 5.65321 5.71399 5.79516 5.86637 5.88701 6.04358 6.19856 6.30572 6.34398 6.48853 6.66683 7.01140 7.37422 7.54430 7.87931 8.33567 8.34838 9.11206 10.74295 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.002514 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.851089 B =11136.572797 C =13260.301445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.145 4.145 4 C 0.085 3.915 5 H 0.059 0.941 6 C 0.112 3.888 7 N -0.742 5.742 8 C 0.532 3.468 9 O -0.513 6.513 10 C -0.125 4.125 11 S -0.139 6.139 12 C -0.523 4.523 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.675 5.675 21 C 0.135 3.865 22 C 0.307 3.693 23 N -0.526 5.526 24 C 0.403 3.597 25 O -0.441 6.441 26 N -0.308 5.308 27 N -0.465 5.465 28 H 0.446 0.554 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.391 0.609 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.347 0.653 43 H 0.062 0.938 44 H 0.116 0.884 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -2.520 -25.965 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.025 4.025 5 H 0.077 0.923 6 C -0.012 4.012 7 N -0.398 5.398 8 C 0.318 3.682 9 O -0.386 6.386 10 C -0.276 4.276 11 S 0.087 5.913 12 C -0.670 4.670 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.516 5.516 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.310 5.310 21 C 0.003 3.997 22 C 0.027 3.973 23 N -0.264 5.264 24 C 0.083 3.917 25 O -0.241 6.241 26 N -0.150 5.150 27 N -0.188 5.188 28 H 0.293 0.707 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.225 0.775 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.168 0.832 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.446 -0.939 -26.583 26.603 hybrid contribution 0.599 -1.631 1.650 2.396 sum 1.046 -2.570 -24.933 25.087 Atomic orbital electron populations 1.21959 0.94958 1.01848 1.02520 1.21025 0.95002 0.97403 0.96401 1.21823 1.02685 0.94651 1.01114 1.21867 0.86117 0.98913 0.95596 0.92285 1.21702 0.99067 0.98251 0.82136 1.46023 1.52572 1.35023 1.06167 1.20269 0.80677 0.83579 0.83690 1.90720 1.35780 1.26180 1.85964 1.23282 1.04043 1.03909 0.96372 1.84834 1.66085 1.43476 0.96890 1.22296 1.34326 1.18302 0.92116 0.89430 1.24714 0.94859 0.96459 0.95269 1.69935 1.41468 1.39272 1.00940 0.86735 0.81174 0.83764 0.80189 1.19177 1.19888 1.15896 1.60275 1.08521 1.39503 1.22690 1.20509 0.83708 0.92685 1.02794 1.23950 0.95091 0.91374 0.86872 1.70277 1.03561 1.25493 1.27054 1.21191 0.86303 0.95482 0.88709 1.84900 1.49081 1.38926 1.51211 1.78264 0.99360 1.23473 1.13883 1.47821 1.03284 1.42697 1.24980 0.70673 0.92040 0.92232 0.92738 0.90652 0.92759 0.90941 0.93253 0.90279 0.89900 0.77495 0.88563 0.88538 0.91877 0.83237 0.91988 0.86598 0.73250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.89 37.16 0.33 -0.59 16 2 C -0.08 -0.48 2.86 -90.62 -0.26 -0.74 16 3 C -0.15 -1.10 8.54 37.15 0.32 -0.78 16 4 C 0.08 0.50 2.00 -67.71 -0.14 0.37 16 5 H 0.06 0.28 7.81 -51.93 -0.41 -0.12 16 6 C 0.11 1.01 4.59 -4.04 -0.02 0.99 16 7 N -0.74 -7.60 4.96 -60.30 -0.30 -7.90 16 8 C 0.53 8.47 7.85 -10.99 -0.09 8.38 16 9 O -0.51 -10.31 15.86 5.55 0.09 -10.22 16 10 C -0.13 -2.22 6.16 36.00 0.22 -2.00 16 11 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 12 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 13 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 14 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 15 N -0.88 -26.09 13.97 55.49 0.78 -25.31 16 16 Si 0.86 21.36 27.74 -169.99 -4.71 16.64 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.23 -5.84 6.74 56.52 0.38 -5.46 16 20 N -0.67 -3.98 5.49 -107.99 -0.59 -4.57 16 21 C 0.13 0.64 6.07 -4.98 -0.03 0.61 16 22 C 0.31 2.37 7.79 -155.72 -1.21 1.15 16 23 N -0.53 -5.63 11.21 -12.10 -0.14 -5.76 16 24 C 0.40 4.41 9.46 -91.24 -0.86 3.54 16 25 O -0.44 -4.01 13.66 -19.30 -0.26 -4.27 16 26 N -0.31 -3.31 12.81 29.18 0.37 -2.94 16 27 N -0.47 -3.42 7.44 32.62 0.24 -3.18 16 28 H 0.45 1.81 8.96 -182.35 -1.63 0.17 16 29 H 0.06 0.42 6.60 -51.93 -0.34 0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.44 7.56 -51.93 -0.39 0.05 16 33 H 0.05 0.45 6.62 -51.93 -0.34 0.11 16 34 H 0.07 0.64 7.50 -51.93 -0.39 0.25 16 35 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.08 0.78 6.75 -51.92 -0.35 0.43 16 37 H 0.08 0.89 6.25 -51.93 -0.32 0.56 16 38 H 0.39 2.76 7.43 -40.82 -0.30 2.46 16 39 H 0.10 1.57 8.14 -51.92 -0.42 1.14 16 40 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.35 2.14 6.77 -39.29 -0.27 1.88 16 43 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.12 0.53 7.52 -51.93 -0.39 0.14 16 45 H 0.41 1.60 9.06 45.56 0.41 2.01 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -37.58 386.40 -9.06 -46.64 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.84 Total: 1.18 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.52 Total: -0.74 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.36 Total: -49.66 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.18 Total: -14.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.58 -9.06 -46.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667436562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.685 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds