Wall clock time and date at job start Wed Apr 1 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47151 * 2 1 4 4 C 1.53001 * 109.47028 * 120.00129 * 2 1 3 5 5 H 1.08999 * 109.47161 * 57.82777 * 4 2 1 6 6 C 1.53001 * 109.47094 * 297.82635 * 4 2 1 7 7 N 1.46496 * 109.47049 * 184.99968 * 6 4 2 8 8 C 1.34780 * 120.00064 * 180.02562 * 7 6 4 9 9 O 1.21287 * 119.99430 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00176 * 180.02562 * 8 7 6 11 11 S 1.81006 * 109.47071 * 179.97438 * 10 8 7 12 12 C 1.76200 * 100.00010 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99843 * 0.02562 * 12 11 10 14 14 C 1.38793 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99718 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00165 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47299 * 90.00021 * 16 14 12 18 18 H 1.48505 * 109.46976 * 209.99816 * 16 14 12 19 19 H 1.48497 * 109.47105 * 329.99643 * 16 14 12 20 20 N 1.46897 * 109.46971 * 177.82768 * 4 2 1 21 21 C 1.46901 * 111.00218 * 271.99699 * 20 4 2 22 22 C 1.50700 * 109.46995 * 174.89522 * 21 20 4 23 23 N 1.30884 * 125.91310 * 275.02250 * 22 21 20 24 24 C 1.33547 * 109.78222 * 180.02562 * 23 22 21 25 25 O 1.35858 * 125.59018 * 180.02562 * 24 23 22 26 26 N 1.31069 * 108.81969 * 0.02562 * 24 23 22 27 27 N 1.34355 * 125.91028 * 94.72232 * 22 21 20 28 28 H 0.96998 * 126.77509 * 0.02562 * 27 22 21 29 29 H 1.08999 * 109.47354 * 299.99728 * 1 2 3 30 30 H 1.09005 * 109.47301 * 60.00326 * 1 2 3 31 31 H 1.09004 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47218 * 239.99743 * 2 1 3 33 33 H 1.08998 * 109.47206 * 54.07013 * 3 2 1 34 34 H 1.09001 * 109.46928 * 174.07043 * 3 2 1 35 35 H 1.09008 * 109.47055 * 294.06736 * 3 2 1 36 36 H 1.09010 * 109.46496 * 65.00320 * 6 4 2 37 37 H 1.08991 * 109.47165 * 305.00461 * 6 4 2 38 38 H 0.97004 * 120.00236 * 0.02562 * 7 6 4 39 39 H 1.08991 * 109.47444 * 299.99945 * 10 8 7 40 40 H 1.09000 * 109.47046 * 60.00448 * 10 8 7 41 41 H 0.97007 * 120.00319 * 180.02562 * 15 14 12 42 42 H 1.00907 * 110.99989 * 148.04737 * 20 4 2 43 43 H 1.08995 * 109.47217 * 294.90009 * 21 20 4 44 44 H 1.08997 * 109.46726 * 54.90026 * 21 20 4 45 45 H 0.96699 * 114.00467 * 90.00160 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6452 -1.7371 1.2689 6 6 1.5751 0.0308 2.4979 7 7 2.1613 -0.5898 3.6883 8 6 1.8893 -0.0923 4.9110 9 8 1.1595 0.8697 5.0256 10 6 2.4928 -0.7304 6.1356 11 16 1.9427 0.1594 7.6128 12 6 2.7739 -0.7706 8.8574 13 1 3.3953 -1.6093 8.5801 14 6 2.6307 -0.4248 10.1938 15 7 3.2520 -1.1192 11.1235 16 14 1.5564 1.0262 10.6733 17 1 0.1659 0.5582 10.9025 18 1 2.0829 1.6420 11.9178 19 1 1.5665 2.0319 9.5807 20 7 3.5080 -0.7669 1.2233 21 6 3.9851 -1.9546 0.5024 22 6 5.4869 -1.9029 0.3877 23 7 6.1648 -1.2759 -0.5398 24 6 7.4737 -1.4426 -0.3336 25 8 8.4673 -0.9289 -1.1047 26 7 7.6425 -2.1832 0.7346 27 7 6.3616 -2.4878 1.2231 28 1 6.1501 -3.0188 2.0068 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.5925 1.9860 0.8321 34 1 3.1248 1.4442 0.1062 35 1 1.7659 1.9247 -0.9384 36 1 0.4878 -0.0118 2.5639 37 1 1.8948 1.0709 2.4356 38 1 2.7453 -1.3590 3.5967 39 1 2.1739 -1.7707 6.1978 40 1 3.5799 -0.6869 6.0696 41 1 3.1517 -0.8778 12.0577 42 1 3.8874 -0.7344 2.1577 43 1 3.6930 -2.8522 1.0475 44 1 3.5451 -1.9756 -0.4945 45 1 8.7686 -0.0532 -0.8261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667436562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:42 Heat of formation + Delta-G solvation = -20.599335 kcal Electronic energy + Delta-G solvation = -27186.719755 eV Core-core repulsion = 23173.506286 eV Total energy + Delta-G solvation = -4013.213469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.28288 -40.91844 -39.24275 -38.46558 -35.30734 -35.21558 -34.67062 -33.37592 -32.10087 -31.28557 -28.80923 -27.93178 -27.84228 -26.36954 -24.33124 -23.59166 -22.12915 -21.88309 -20.28708 -19.74124 -19.61491 -18.70838 -17.99575 -17.73892 -17.22673 -17.10610 -16.84991 -16.48017 -16.14781 -16.01102 -15.34021 -15.20097 -15.09641 -14.85945 -14.58837 -14.42183 -14.17351 -14.03061 -13.56145 -13.40533 -13.34233 -13.03602 -13.00682 -12.84224 -12.69031 -12.63240 -12.54901 -11.89970 -11.82040 -11.69447 -11.32924 -11.21739 -11.17315 -11.02826 -10.99336 -10.71966 -10.52279 -10.14232 -9.49168 -8.98994 -8.51954 -6.22118 0.34294 0.99606 1.31046 1.35581 1.46793 1.54364 1.56266 1.57704 2.19516 2.25176 2.39356 2.71580 2.86773 3.07968 3.43074 3.63350 3.74994 3.86543 4.09050 4.17401 4.24183 4.34098 4.43014 4.44966 4.47230 4.54930 4.71435 4.79024 4.92305 4.93099 4.97001 5.00128 5.17372 5.23578 5.30973 5.40827 5.56532 5.62376 5.70380 5.83730 6.04402 6.11330 6.20009 6.40157 6.49334 6.89704 6.93851 7.17816 8.60290 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.002514 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.851089 B =11136.572797 C =13260.301445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.074 4.074 3 C -0.143 4.143 4 C 0.098 3.902 5 H 0.086 0.914 6 C 0.113 3.887 7 N -0.713 5.713 8 C 0.537 3.463 9 O -0.560 6.560 10 C -0.112 4.112 11 S -0.178 6.178 12 C -0.526 4.526 13 H 0.064 0.936 14 C 0.045 3.955 15 N -0.918 5.918 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.262 1.262 19 H -0.236 1.236 20 N -0.686 5.686 21 C 0.137 3.863 22 C 0.315 3.685 23 N -0.558 5.558 24 C 0.391 3.609 25 O -0.452 6.452 26 N -0.338 5.338 27 N -0.454 5.454 28 H 0.460 0.540 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.412 0.588 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.276 0.724 42 H 0.346 0.654 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -3.389 -27.508 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.094 4.094 3 C -0.200 4.200 4 C -0.011 4.011 5 H 0.104 0.896 6 C -0.010 4.010 7 N -0.368 5.368 8 C 0.322 3.678 9 O -0.438 6.438 10 C -0.263 4.263 11 S 0.048 5.952 12 C -0.674 4.674 13 H 0.082 0.918 14 C -0.160 4.160 15 N -0.556 5.556 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.186 1.186 19 H -0.160 1.160 20 N -0.321 5.321 21 C 0.006 3.994 22 C 0.036 3.964 23 N -0.297 5.297 24 C 0.071 3.929 25 O -0.255 6.255 26 N -0.181 5.181 27 N -0.178 5.178 28 H 0.310 0.690 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.249 0.751 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.166 0.834 43 H 0.118 0.882 44 H 0.141 0.859 45 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -0.406 -1.847 -28.147 28.210 hybrid contribution 0.925 -1.423 1.968 2.598 sum 0.519 -3.270 -26.179 26.388 Atomic orbital electron populations 1.21942 0.94688 1.02502 1.02017 1.21010 0.95129 0.96354 0.96903 1.21776 1.01683 0.95866 1.00684 1.21759 0.86175 0.99631 0.93552 0.89621 1.21778 0.98820 0.97877 0.82535 1.45698 1.51546 1.34797 1.04715 1.19920 0.80214 0.83015 0.84652 1.90714 1.38083 1.28294 1.86674 1.23276 1.05141 1.03982 0.93860 1.84792 1.66246 1.44690 0.99464 1.22457 1.33761 1.17763 0.93394 0.91783 1.25550 0.96120 0.98885 0.95476 1.70014 1.43056 1.40998 1.01523 0.85887 0.79687 0.80851 0.80093 1.18695 1.18605 1.16032 1.60191 1.08380 1.40754 1.22749 1.20715 0.81469 0.93578 1.03653 1.24470 0.96120 0.89969 0.85861 1.70281 1.03678 1.27017 1.28679 1.21422 0.86787 0.95748 0.88918 1.84839 1.48928 1.40360 1.51401 1.78170 1.01338 1.24195 1.14409 1.47735 1.02267 1.42515 1.25268 0.68981 0.93276 0.92091 0.91472 0.89503 0.94004 0.92249 0.93081 0.90687 0.91626 0.75110 0.86566 0.86755 0.91419 0.83359 0.88179 0.85930 0.71145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.89 71.98 0.64 -0.82 16 2 C -0.07 -0.72 2.86 -10.80 -0.03 -0.75 16 3 C -0.14 -2.00 8.54 71.98 0.61 -1.38 16 4 C 0.10 0.83 2.00 44.92 0.09 0.92 16 5 H 0.09 0.36 7.81 -2.39 -0.02 0.34 16 6 C 0.11 1.79 4.59 86.38 0.40 2.18 16 7 N -0.71 -12.50 4.96 -463.06 -2.30 -14.80 16 8 C 0.54 16.05 7.85 87.65 0.69 16.74 16 9 O -0.56 -22.07 15.86 -3.05 -0.05 -22.12 16 10 C -0.11 -3.75 6.16 71.23 0.44 -3.31 16 11 S -0.18 -8.60 18.55 -56.49 -1.05 -9.65 16 12 C -0.53 -29.56 10.04 67.95 0.68 -28.88 16 13 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 14 C 0.05 2.58 5.50 84.86 0.47 3.05 16 15 N -0.92 -54.91 13.97 21.65 0.30 -54.61 16 16 Si 0.91 44.12 27.74 68.60 1.90 46.03 16 17 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.24 -11.40 6.74 99.48 0.67 -10.73 16 20 N -0.69 -5.88 5.49 -495.59 -2.72 -8.60 16 21 C 0.14 0.77 6.07 85.56 0.52 1.29 16 22 C 0.31 4.13 7.79 138.23 1.08 5.21 16 23 N -0.56 -11.26 11.21 -304.31 -3.41 -14.67 16 24 C 0.39 8.35 9.46 180.57 1.71 10.06 16 25 O -0.45 -8.15 13.66 -91.96 -1.26 -9.40 16 26 N -0.34 -7.00 12.81 -174.95 -2.24 -9.24 16 27 N -0.45 -5.77 7.44 -50.72 -0.38 -6.15 16 28 H 0.46 2.55 8.96 -213.11 -1.91 0.64 16 29 H 0.05 0.60 6.60 -2.39 -0.02 0.58 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.71 7.56 -2.39 -0.02 0.70 16 33 H 0.04 0.68 6.62 -2.39 -0.02 0.66 16 34 H 0.06 0.99 7.50 -2.39 -0.02 0.97 16 35 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.07 1.33 6.75 -2.38 -0.02 1.31 16 37 H 0.07 1.33 6.25 -2.39 -0.01 1.32 16 38 H 0.41 4.10 7.43 -92.71 -0.69 3.41 16 39 H 0.12 3.47 8.14 -2.40 -0.02 3.45 16 40 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 41 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 42 H 0.35 3.11 6.77 -89.69 -0.61 2.51 16 43 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.12 0.62 7.52 -2.39 -0.02 0.60 16 45 H 0.43 3.30 9.06 -74.06 -0.67 2.63 16 Total: -1.00 -83.38 386.40 -6.74 -90.13 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -2.84 Total: 8.77 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 7.29 Total: 4.31 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -10.75 Total: -108.07 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.30 Total: -31.52 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.03 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.65 kcal Total: -83.38 -6.74 -90.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667436562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.530 kcal (2) G-P(sol) polarization free energy of solvation -83.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds