Wall clock time and date at job start Wed Apr 1 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36942 * 120.00288 * 2 1 4 4 H 1.07996 * 120.00615 * 201.81864 * 3 2 1 5 5 C 1.38811 * 119.99457 * 21.81225 * 3 2 1 6 6 N 1.31619 * 120.00429 * 15.25167 * 5 3 2 7 7 Si 1.86800 * 119.99925 * 195.25020 * 5 3 2 8 8 H 1.48500 * 109.47147 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47319 * 120.00397 * 7 5 3 10 10 H 1.48505 * 109.47142 * 240.00523 * 7 5 3 11 11 C 1.46498 * 120.00161 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47462 * 273.78343 * 11 2 1 13 13 C 1.38257 * 119.99876 * 357.98349 * 12 11 2 14 14 C 1.38209 * 120.00465 * 180.27806 * 13 12 11 15 15 C 1.38260 * 119.99575 * 359.48401 * 14 13 12 16 16 C 1.38213 * 119.99982 * 0.49607 * 15 14 13 17 17 C 1.38204 * 120.00521 * 178.00477 * 12 11 2 18 18 C 1.50700 * 120.00005 * 359.97438 * 17 12 11 19 19 N 1.46511 * 109.47231 * 75.39695 * 18 17 12 20 20 C 1.34766 * 120.00154 * 180.02562 * 19 18 17 21 21 O 1.21533 * 120.00418 * 0.02562 * 20 19 18 22 22 C 1.48001 * 120.00055 * 179.97438 * 20 19 18 23 23 C 1.39905 * 120.93807 * 0.02562 * 22 20 19 24 24 C 1.38037 * 119.03238 * 179.97438 * 23 22 20 25 25 N 1.31869 * 120.98519 * 0.02737 * 24 23 22 26 26 C 1.31716 * 122.09083 * 359.97438 * 25 24 23 27 27 C 1.38547 * 120.84705 * 359.71456 * 26 25 24 28 28 F 1.35095 * 120.53571 * 180.28955 * 27 26 25 29 29 H 1.09001 * 109.47460 * 273.48769 * 1 2 3 30 30 H 1.08999 * 109.47413 * 33.49529 * 1 2 3 31 31 H 1.09006 * 109.47370 * 153.48788 * 1 2 3 32 32 H 0.97000 * 120.00672 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47208 * 153.78503 * 11 2 1 34 34 H 1.09002 * 109.47527 * 33.78410 * 11 2 1 35 35 H 1.08002 * 119.99704 * 0.02562 * 13 12 11 36 36 H 1.07998 * 120.00539 * 179.72266 * 14 13 12 37 37 H 1.07997 * 119.99928 * 180.25289 * 15 14 13 38 38 H 1.08002 * 119.99921 * 179.76107 * 16 15 14 39 39 H 1.09004 * 109.47550 * 195.39580 * 18 17 12 40 40 H 1.09001 * 109.47610 * 315.39689 * 18 17 12 41 41 H 0.97000 * 119.99440 * 0.02562 * 19 18 17 42 42 H 1.07991 * 120.48538 * 359.97438 * 23 22 20 43 43 H 1.07995 * 119.51015 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.57982 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1716 1.2195 -0.3476 5 6 1.5301 2.3450 0.4467 6 7 0.4146 2.2693 1.1411 7 14 2.2796 4.0123 0.0623 8 1 3.5244 3.8257 -0.7256 9 1 1.3126 4.8205 -0.7230 10 1 2.5981 4.7161 1.3306 11 6 2.1974 -1.2687 0.0006 12 6 2.3675 -1.7500 1.4185 13 6 1.8950 -0.9858 2.4693 14 6 2.0559 -1.4244 3.7700 15 6 2.6801 -2.6326 4.0198 16 6 3.1521 -3.3968 2.9694 17 6 2.9961 -2.9552 1.6685 18 6 3.5111 -3.7883 0.5232 19 7 4.7410 -3.1898 -0.0017 20 6 5.3830 -3.7672 -1.0364 21 8 4.9415 -4.7841 -1.5345 22 6 6.6252 -3.1623 -1.5671 23 6 7.1505 -1.9918 -1.0091 24 6 8.3117 -1.4618 -1.5346 25 7 8.9248 -2.0416 -2.5479 26 6 8.4671 -3.1441 -3.1047 27 6 7.3114 -3.7488 -2.6377 28 9 6.8507 -4.8827 -3.2097 29 1 -0.3634 0.0625 1.0257 30 1 -0.3634 0.8570 -0.5671 31 1 -0.3634 -0.9196 -0.4588 32 1 -0.0182 3.0792 1.4536 33 1 3.1776 -1.1226 -0.4535 34 1 1.6395 -2.0107 -0.5705 35 1 1.4037 -0.0441 2.2739 36 1 1.6908 -0.8253 4.5911 37 1 2.8022 -2.9773 5.0360 38 1 3.6430 -4.3387 3.1647 39 1 3.7199 -4.7990 0.8741 40 1 2.7598 -3.8256 -0.2656 41 1 5.0932 -2.3780 0.3955 42 1 6.6549 -1.5100 -0.1795 43 1 8.7238 -0.5583 -1.1102 44 1 9.0022 -3.5851 -3.9328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672925043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:54 Heat of formation + Delta-G solvation = 14.205078 kcal Electronic energy + Delta-G solvation = -29472.955236 eV Core-core repulsion = 25305.887087 eV Total energy + Delta-G solvation = -4167.068150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.15010 -40.71609 -39.60196 -38.75329 -35.63625 -35.02435 -33.18862 -31.98791 -31.23864 -30.90974 -29.94275 -26.82016 -26.10546 -25.59737 -24.68847 -23.61837 -22.22622 -21.07075 -20.93019 -20.04697 -18.61498 -17.61631 -17.51094 -16.81758 -16.21586 -16.15174 -15.92678 -15.49547 -15.41894 -14.79855 -14.67488 -14.46110 -14.24609 -13.98121 -13.72323 -13.69632 -13.52600 -13.25017 -13.01220 -12.67724 -12.50439 -12.38423 -12.22406 -11.62741 -11.39749 -10.95489 -10.83672 -10.63501 -10.57598 -10.48411 -10.35332 -10.27700 -10.08343 -9.93340 -9.86708 -9.34778 -9.14843 -8.64960 -8.38405 -8.09665 -6.92690 -5.85151 -3.30285 0.23741 0.53982 1.62780 1.93181 2.64137 2.98689 3.30482 3.38192 3.39099 3.39856 3.62132 4.04316 4.19035 4.28573 4.35170 4.40835 4.44570 4.86963 4.99369 5.17943 5.24771 5.25792 5.38150 5.38202 5.42282 5.48847 5.53070 5.71935 5.75787 5.95028 6.14499 6.17431 6.24259 6.30286 6.37571 6.49356 6.67522 6.68360 6.84983 7.13693 7.26493 7.28308 7.37024 7.38722 7.61028 7.63541 7.72826 7.97872 8.27154 9.11559 9.73954 10.23050 11.19974 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.003673 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.429376 B = 7620.552264 C = 9357.470016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.598 5.598 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.181 3.819 12 C -0.076 4.076 13 C -0.086 4.086 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.130 4.130 18 C 0.169 3.831 19 N -0.708 5.708 20 C 0.556 3.444 21 O -0.521 6.521 22 C -0.124 4.124 23 C -0.108 4.108 24 C 0.085 3.915 25 N -0.442 5.442 26 C 0.069 3.931 27 C 0.105 3.895 28 F -0.106 7.106 29 H 0.030 0.970 30 H 0.045 0.955 31 H -0.002 1.002 32 H 0.253 0.747 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.163 0.837 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.404 0.596 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.892 -10.239 -0.058 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.320 5.320 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.053 3.947 12 C -0.080 4.080 13 C -0.104 4.104 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.132 4.132 17 C -0.131 4.131 18 C 0.047 3.953 19 N -0.360 5.360 20 C 0.341 3.659 21 O -0.398 6.398 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.071 4.071 25 N -0.151 5.151 26 C -0.090 4.090 27 C 0.082 3.918 28 F -0.084 7.084 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.180 0.820 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.240 0.760 42 H 0.169 0.831 43 H 0.189 0.811 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.153 -10.502 -0.712 16.078 hybrid contribution -0.434 0.868 0.571 1.126 sum 11.719 -9.634 -0.141 15.171 Atomic orbital electron populations 1.20844 0.82336 0.95966 0.99364 1.43953 1.01947 1.00446 1.85619 1.19190 0.97732 0.85068 1.36472 0.91445 1.24933 0.97907 0.98310 0.98149 1.70037 1.19887 1.27146 1.37883 0.86247 0.78521 0.84477 0.77646 1.20378 1.21598 1.21753 1.19917 0.96403 0.88367 0.89967 1.21308 0.94597 0.92419 0.99630 1.21805 0.96654 1.01134 0.90758 1.21307 0.99017 0.95934 0.97480 1.20987 1.00822 0.95762 0.98215 1.20830 1.00773 0.99500 0.92093 1.19604 1.03352 0.96624 0.93561 1.20172 0.85260 0.95407 0.94505 1.45985 1.26647 1.29713 1.33672 1.17875 0.83249 0.84285 0.80488 1.90845 1.66652 1.23733 1.58534 1.20638 0.97515 0.97604 0.97789 1.22428 0.96577 0.93787 1.00062 1.22856 0.92179 0.99619 0.92427 1.67603 1.31338 1.07713 1.08421 1.22993 0.92888 0.92759 1.00400 1.18898 0.94676 0.85005 0.93257 1.91617 1.87945 1.46423 1.82439 0.95151 0.93595 0.98323 0.93630 0.92275 0.93126 0.81994 0.86807 0.87037 0.86985 0.90852 0.90224 0.76009 0.83065 0.81081 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 8.61 59.84 0.52 4.21 16 2 N -0.60 -13.76 1.74 -182.51 -0.32 -14.08 16 3 C -0.26 -6.41 9.17 -15.06 -0.14 -6.55 16 4 H 0.07 1.67 7.84 -52.49 -0.41 1.26 16 5 C 0.01 0.14 5.04 -17.43 -0.09 0.06 16 6 N -0.90 -24.26 10.78 55.49 0.60 -23.66 16 7 Si 0.90 20.61 29.58 -169.99 -5.03 15.58 16 8 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 C 0.18 3.45 5.00 -5.19 -0.03 3.43 16 12 C -0.08 -1.34 5.88 -104.63 -0.62 -1.96 16 13 C -0.09 -1.66 9.14 -39.59 -0.36 -2.02 16 14 C -0.12 -1.97 10.05 -39.58 -0.40 -2.36 16 15 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 16 C -0.11 -1.55 9.67 -39.58 -0.38 -1.93 16 17 C -0.13 -1.92 5.25 -104.63 -0.55 -2.47 16 18 C 0.17 2.26 5.15 -5.19 -0.03 2.23 16 19 N -0.71 -8.85 4.98 -62.37 -0.31 -9.16 16 20 C 0.56 7.73 7.79 -12.26 -0.10 7.64 16 21 O -0.52 -8.99 15.48 5.34 0.08 -8.91 16 22 C -0.12 -1.46 5.91 -104.60 -0.62 -2.08 16 23 C -0.11 -1.00 9.61 -39.03 -0.38 -1.38 16 24 C 0.09 0.75 11.17 -17.61 -0.20 0.55 16 25 N -0.44 -4.51 10.33 -13.24 -0.14 -4.65 16 26 C 0.07 0.67 11.17 -17.49 -0.20 0.47 16 27 C 0.10 1.23 7.33 -38.79 -0.28 0.95 16 28 F -0.11 -1.44 15.71 2.25 0.04 -1.40 16 29 H 0.03 0.75 6.81 -51.93 -0.35 0.39 16 30 H 0.05 1.15 7.21 -51.93 -0.37 0.78 16 31 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16 32 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.06 1.09 7.51 -51.93 -0.39 0.70 16 34 H 0.05 0.93 7.30 -51.93 -0.38 0.55 16 35 H 0.16 3.80 5.75 -52.49 -0.30 3.50 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.11 1.27 8.00 -52.49 -0.42 0.85 16 39 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16 40 H 0.08 1.15 7.22 -51.93 -0.37 0.77 16 41 H 0.40 4.48 6.60 -40.82 -0.27 4.21 16 42 H 0.15 1.11 6.54 -52.49 -0.34 0.76 16 43 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -30.06 373.09 -8.95 -39.02 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.27 Total: 5.22 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -4.23 Total: -3.59 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.17 Total: -51.54 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.06 -8.95 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672925043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.221 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds