Wall clock time and date at job start Wed Apr 1 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36942 * 120.00288 * 2 1 4 4 H 1.07996 * 120.00615 * 201.81864 * 3 2 1 5 5 C 1.38811 * 119.99457 * 21.81225 * 3 2 1 6 6 N 1.31619 * 120.00429 * 15.25167 * 5 3 2 7 7 Si 1.86800 * 119.99925 * 195.25020 * 5 3 2 8 8 H 1.48500 * 109.47147 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47319 * 120.00397 * 7 5 3 10 10 H 1.48505 * 109.47142 * 240.00523 * 7 5 3 11 11 C 1.46498 * 120.00161 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47462 * 273.78343 * 11 2 1 13 13 C 1.38257 * 119.99876 * 357.98349 * 12 11 2 14 14 C 1.38209 * 120.00465 * 180.27806 * 13 12 11 15 15 C 1.38260 * 119.99575 * 359.48401 * 14 13 12 16 16 C 1.38213 * 119.99982 * 0.49607 * 15 14 13 17 17 C 1.38204 * 120.00521 * 178.00477 * 12 11 2 18 18 C 1.50700 * 120.00005 * 359.97438 * 17 12 11 19 19 N 1.46511 * 109.47231 * 75.39695 * 18 17 12 20 20 C 1.34766 * 120.00154 * 180.02562 * 19 18 17 21 21 O 1.21533 * 120.00418 * 0.02562 * 20 19 18 22 22 C 1.48001 * 120.00055 * 179.97438 * 20 19 18 23 23 C 1.39905 * 120.93807 * 0.02562 * 22 20 19 24 24 C 1.38037 * 119.03238 * 179.97438 * 23 22 20 25 25 N 1.31869 * 120.98519 * 0.02737 * 24 23 22 26 26 C 1.31716 * 122.09083 * 359.97438 * 25 24 23 27 27 C 1.38547 * 120.84705 * 359.71456 * 26 25 24 28 28 F 1.35095 * 120.53571 * 180.28955 * 27 26 25 29 29 H 1.09001 * 109.47460 * 273.48769 * 1 2 3 30 30 H 1.08999 * 109.47413 * 33.49529 * 1 2 3 31 31 H 1.09006 * 109.47370 * 153.48788 * 1 2 3 32 32 H 0.97000 * 120.00672 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47208 * 153.78503 * 11 2 1 34 34 H 1.09002 * 109.47527 * 33.78410 * 11 2 1 35 35 H 1.08002 * 119.99704 * 0.02562 * 13 12 11 36 36 H 1.07998 * 120.00539 * 179.72266 * 14 13 12 37 37 H 1.07997 * 119.99928 * 180.25289 * 15 14 13 38 38 H 1.08002 * 119.99921 * 179.76107 * 16 15 14 39 39 H 1.09004 * 109.47550 * 195.39580 * 18 17 12 40 40 H 1.09001 * 109.47610 * 315.39689 * 18 17 12 41 41 H 0.97000 * 119.99440 * 0.02562 * 19 18 17 42 42 H 1.07991 * 120.48538 * 359.97438 * 23 22 20 43 43 H 1.07995 * 119.51015 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.57982 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1716 1.2195 -0.3476 5 6 1.5301 2.3450 0.4467 6 7 0.4146 2.2693 1.1411 7 14 2.2796 4.0123 0.0623 8 1 3.5244 3.8257 -0.7256 9 1 1.3126 4.8205 -0.7230 10 1 2.5981 4.7161 1.3306 11 6 2.1974 -1.2687 0.0006 12 6 2.3675 -1.7500 1.4185 13 6 1.8950 -0.9858 2.4693 14 6 2.0559 -1.4244 3.7700 15 6 2.6801 -2.6326 4.0198 16 6 3.1521 -3.3968 2.9694 17 6 2.9961 -2.9552 1.6685 18 6 3.5111 -3.7883 0.5232 19 7 4.7410 -3.1898 -0.0017 20 6 5.3830 -3.7672 -1.0364 21 8 4.9415 -4.7841 -1.5345 22 6 6.6252 -3.1623 -1.5671 23 6 7.1505 -1.9918 -1.0091 24 6 8.3117 -1.4618 -1.5346 25 7 8.9248 -2.0416 -2.5479 26 6 8.4671 -3.1441 -3.1047 27 6 7.3114 -3.7488 -2.6377 28 9 6.8507 -4.8827 -3.2097 29 1 -0.3634 0.0625 1.0257 30 1 -0.3634 0.8570 -0.5671 31 1 -0.3634 -0.9196 -0.4588 32 1 -0.0182 3.0792 1.4536 33 1 3.1776 -1.1226 -0.4535 34 1 1.6395 -2.0107 -0.5705 35 1 1.4037 -0.0441 2.2739 36 1 1.6908 -0.8253 4.5911 37 1 2.8022 -2.9773 5.0360 38 1 3.6430 -4.3387 3.1647 39 1 3.7199 -4.7990 0.8741 40 1 2.7598 -3.8256 -0.2656 41 1 5.0932 -2.3780 0.3955 42 1 6.6549 -1.5100 -0.1795 43 1 8.7238 -0.5583 -1.1102 44 1 9.0022 -3.5851 -3.9328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672925043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:53 Heat of formation + Delta-G solvation = -2.161195 kcal Electronic energy + Delta-G solvation = -29473.664931 eV Core-core repulsion = 25305.887087 eV Total energy + Delta-G solvation = -4167.777844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.07068 -41.62747 -40.68842 -39.90602 -37.36532 -36.16052 -34.10589 -33.65455 -32.18114 -31.93671 -31.46937 -28.20508 -27.77332 -27.09918 -25.60756 -24.42330 -23.84293 -22.31029 -22.03134 -21.43403 -19.55517 -18.71156 -18.48476 -18.37784 -17.40251 -17.16895 -16.92874 -16.85761 -16.48272 -16.24985 -15.76926 -15.49738 -15.47792 -15.40879 -14.93083 -14.77521 -14.65524 -14.50608 -14.43682 -14.01164 -13.63001 -13.59012 -13.28095 -13.17446 -13.00822 -12.79017 -12.56234 -12.31037 -12.03745 -11.92144 -11.83361 -11.62085 -11.58591 -11.13205 -10.73237 -10.60697 -10.24861 -10.09676 -9.62865 -9.38987 -8.82065 -7.80536 -5.26921 -0.61779 -0.19931 0.39756 0.67706 1.47027 1.50941 1.58509 1.66378 1.96525 2.52903 2.57422 2.82698 3.00570 3.34879 3.35705 3.39472 3.54287 3.64553 3.67023 3.76742 4.07188 4.20466 4.28296 4.38708 4.41801 4.48196 4.60708 4.64878 4.72910 4.74329 4.76416 4.80877 4.82757 5.03807 5.19125 5.22610 5.30233 5.38926 5.42840 5.62609 5.65755 5.70098 5.87339 5.98947 6.27138 6.31145 6.36099 6.64492 6.94594 7.16779 7.86806 8.32327 9.23203 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.003673 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.429376 B = 7620.552264 C = 9357.470016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.608 5.608 3 C -0.254 4.254 4 H 0.072 0.928 5 C -0.043 4.043 6 N -0.931 5.931 7 Si 0.957 3.043 8 H -0.266 1.266 9 H -0.298 1.298 10 H -0.295 1.295 11 C 0.184 3.816 12 C -0.088 4.088 13 C -0.115 4.115 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.102 4.102 17 C -0.117 4.117 18 C 0.173 3.827 19 N -0.699 5.699 20 C 0.556 3.444 21 O -0.561 6.561 22 C -0.139 4.139 23 C -0.102 4.102 24 C 0.091 3.909 25 N -0.455 5.455 26 C 0.077 3.923 27 C 0.082 3.918 28 F -0.123 7.123 29 H 0.008 0.992 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.246 0.754 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.412 0.588 42 H 0.172 0.828 43 H 0.203 0.797 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.306 -11.122 0.740 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.330 5.330 3 C -0.384 4.384 4 H 0.090 0.910 5 C -0.239 4.239 6 N -0.578 5.578 7 Si 0.787 3.213 8 H -0.190 1.190 9 H -0.225 1.225 10 H -0.222 1.222 11 C 0.057 3.943 12 C -0.091 4.091 13 C -0.133 4.133 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.050 3.950 19 N -0.350 5.350 20 C 0.343 3.657 21 O -0.440 6.440 22 C -0.150 4.150 23 C -0.122 4.122 24 C -0.065 4.065 25 N -0.163 5.163 26 C -0.082 4.082 27 C 0.059 3.941 28 F -0.101 7.101 29 H 0.026 0.974 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.189 0.811 43 H 0.220 0.780 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.599 -11.391 0.089 18.517 hybrid contribution -1.140 1.088 0.370 1.619 sum 13.458 -10.303 0.459 16.956 Atomic orbital electron populations 1.20558 0.82947 0.95740 0.97740 1.44064 1.01866 1.01436 1.85680 1.19446 0.97829 0.85939 1.35177 0.91031 1.25566 0.98608 1.01053 0.98659 1.70195 1.21199 1.27111 1.39246 0.85356 0.78015 0.80938 0.77040 1.19003 1.22507 1.22188 1.19954 0.96228 0.86772 0.91297 1.20973 0.96370 0.93810 0.97948 1.21474 0.98732 1.00324 0.92786 1.21397 0.99569 0.97279 0.96338 1.21320 0.98861 0.94231 1.00152 1.21221 0.99416 1.00356 0.91086 1.19603 1.02249 0.95222 0.94747 1.20111 0.85294 0.95871 0.93706 1.45877 1.26131 1.29761 1.33263 1.18167 0.83646 0.83753 0.80155 1.90822 1.67870 1.25547 1.59781 1.20620 0.97095 0.98797 0.98537 1.22648 0.96631 0.92688 1.00215 1.23410 0.91523 1.00026 0.91507 1.67705 1.31698 1.07878 1.09048 1.23331 0.92039 0.92315 1.00513 1.19180 0.95784 0.85124 0.93989 1.91569 1.88315 1.47421 1.82830 0.97351 0.96263 0.96083 0.94431 0.91619 0.92673 0.86607 0.86389 0.83630 0.83490 0.89372 0.91396 0.75043 0.81075 0.78002 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.42 8.61 127.77 1.10 9.52 16 2 N -0.61 -28.51 1.74 -731.32 -1.27 -29.78 16 3 C -0.25 -12.89 9.17 84.03 0.77 -12.12 16 4 H 0.07 3.51 7.84 -2.91 -0.02 3.49 16 5 C -0.04 -2.27 5.04 84.86 0.43 -1.85 16 6 N -0.93 -51.89 10.78 21.65 0.23 -51.65 16 7 Si 0.96 42.87 29.58 68.60 2.03 44.90 16 8 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 9 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 11 C 0.18 6.96 5.00 85.63 0.43 7.39 16 12 C -0.09 -3.05 5.88 -19.87 -0.12 -3.17 16 13 C -0.11 -4.50 9.14 22.27 0.20 -4.30 16 14 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 15 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 16 C -0.10 -2.39 9.67 22.27 0.22 -2.17 16 17 C -0.12 -3.17 5.25 -19.87 -0.10 -3.27 16 18 C 0.17 4.25 5.15 85.63 0.44 4.69 16 19 N -0.70 -16.12 4.98 -469.54 -2.34 -18.46 16 20 C 0.56 14.90 7.79 86.83 0.68 15.58 16 21 O -0.56 -19.23 15.48 -3.82 -0.06 -19.29 16 22 C -0.14 -3.11 5.91 -19.85 -0.12 -3.23 16 23 C -0.10 -1.63 9.61 22.63 0.22 -1.41 16 24 C 0.09 1.33 11.17 84.64 0.95 2.28 16 25 N -0.45 -8.16 10.33 -195.81 -2.02 -10.18 16 26 C 0.08 1.36 11.17 84.78 0.95 2.31 16 27 C 0.08 1.87 7.33 22.78 0.17 2.03 16 28 F -0.12 -3.36 15.71 44.97 0.71 -2.65 16 29 H 0.01 0.43 6.81 -2.39 -0.02 0.41 16 30 H 0.02 0.99 7.21 -2.39 -0.02 0.97 16 31 H 0.02 0.88 7.89 -2.38 -0.02 0.86 16 32 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.07 2.36 7.51 -2.39 -0.02 2.34 16 34 H 0.06 2.01 7.30 -2.39 -0.02 2.00 16 35 H 0.12 5.71 5.75 -2.91 -0.02 5.69 16 36 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 2.50 8.00 -2.91 -0.02 2.48 16 39 H 0.09 1.96 7.96 -2.38 -0.02 1.94 16 40 H 0.07 1.87 7.22 -2.39 -0.02 1.86 16 41 H 0.41 8.14 6.60 -92.71 -0.61 7.53 16 42 H 0.17 1.96 6.54 -2.92 -0.02 1.94 16 43 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 44 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -67.70 373.09 4.37 -63.33 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.44 Total: 18.30 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 6.65 Total: 5.49 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -5.40 Total: -110.08 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.06 Total: -19.29 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.71 Total: -2.65 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -67.70 4.37 -63.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672925043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.168 kcal (2) G-P(sol) polarization free energy of solvation -67.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds