Wall clock time and date at job start Wed Apr 1 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 6 6 O 1.42897 * 109.46977 * 300.00294 * 4 3 2 7 7 C 1.52996 * 109.47245 * 180.02562 * 4 3 2 8 8 N 1.46892 * 109.47505 * 184.99847 * 7 4 3 9 9 C 1.46905 * 111.00369 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.46996 * 180.02562 * 9 8 7 11 11 C 1.35347 * 126.91395 * 94.68852 * 10 9 8 12 12 N 1.33772 * 106.49795 * 179.90371 * 11 10 9 13 13 N 1.28632 * 108.88601 * 0.36221 * 12 11 10 14 14 N 1.28722 * 110.17776 * 359.77012 * 13 12 11 15 15 C 1.46493 * 125.86865 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 17 17 O 1.21279 * 120.00031 * 180.02562 * 16 2 1 18 18 C 1.50699 * 119.99563 * 0.02562 * 16 2 1 19 19 S 1.81004 * 109.46896 * 179.97438 * 18 16 2 20 20 C 1.76205 * 99.99950 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00211 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99841 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99716 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00102 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47028 * 89.99849 * 24 22 20 26 26 H 1.48506 * 109.47024 * 210.00175 * 24 22 20 27 27 H 1.48500 * 109.47007 * 329.99819 * 24 22 20 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 32 32 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 33 33 H 0.96703 * 114.00499 * 299.99593 * 6 4 3 34 34 H 1.09001 * 109.47044 * 305.00068 * 7 4 3 35 35 H 1.09000 * 109.47161 * 64.99629 * 7 4 3 36 36 H 1.00904 * 111.00336 * 303.95512 * 8 7 4 37 37 H 1.09002 * 109.46613 * 299.99926 * 9 8 7 38 38 H 1.08991 * 109.46861 * 59.99768 * 9 8 7 39 39 H 1.08005 * 126.75569 * 0.03239 * 11 10 9 40 40 H 1.09008 * 109.46991 * 270.02439 * 15 14 13 41 41 H 1.09000 * 109.47627 * 30.02197 * 15 14 13 42 42 H 1.09003 * 109.47377 * 150.02616 * 15 14 13 43 43 H 1.09004 * 109.47017 * 299.99442 * 18 16 2 44 44 H 1.09002 * 109.47507 * 59.99434 * 18 16 2 45 45 H 0.97001 * 119.99678 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 3.0416 0.9508 1.9565 6 8 1.2038 1.8813 2.1161 7 6 3.2170 3.0357 1.4426 8 7 3.5663 3.3995 2.8222 9 6 4.3035 4.6695 2.8612 10 6 4.6443 5.0088 4.2894 11 6 5.7986 4.7287 4.9383 12 7 5.6645 5.2125 6.1782 13 7 4.5011 5.7495 6.2920 14 7 3.8556 5.6498 5.1828 15 6 2.5000 6.1446 4.9312 16 6 2.1389 -1.1672 0.0005 17 8 3.3517 -1.1672 0.0010 18 6 1.3854 -2.4723 0.0005 19 16 2.5616 -3.8480 0.0005 20 6 1.4415 -5.2082 -0.0003 21 1 0.3762 -5.0306 -0.0001 22 6 1.9283 -6.5081 -0.0010 23 7 1.0914 -7.5242 -0.0011 24 14 3.7708 -6.8154 -0.0019 25 1 4.2596 -6.8974 1.3979 26 1 4.0592 -8.0926 -0.7027 27 1 4.4582 -5.7006 -0.7018 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 3.1499 1.1384 -0.5137 32 1 1.6085 2.0284 -0.5138 33 1 0.6267 2.5440 1.7126 34 1 4.1277 2.9298 0.8531 35 1 2.5917 3.8158 1.0083 36 1 2.7434 3.4407 3.4048 37 1 5.2218 4.5745 2.2817 38 1 3.6862 5.4611 2.4367 39 1 6.6596 4.2171 4.5340 40 1 1.7777 5.3653 5.1749 41 1 2.3120 7.0210 5.5514 42 1 2.4013 6.4154 3.8800 43 1 0.7585 -2.5298 0.8904 44 1 0.7590 -2.5302 -0.8896 45 1 1.4316 -8.4326 -0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677060381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:23 Heat of formation + Delta-G solvation = 23.955858 kcal Electronic energy + Delta-G solvation = -26884.222028 eV Core-core repulsion = 22872.940617 eV Total energy + Delta-G solvation = -4011.281411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.62967 -39.89824 -38.28362 -36.30284 -35.09495 -34.89264 -32.43764 -32.32846 -30.93625 -29.08385 -28.45426 -27.21871 -26.00920 -25.58615 -24.07063 -22.97775 -22.14258 -21.16064 -19.48117 -17.80054 -17.71823 -17.22463 -17.11640 -16.90421 -16.46757 -15.94749 -15.81229 -15.20942 -15.06809 -14.97823 -14.86011 -14.16553 -13.93999 -13.85492 -13.66856 -13.49745 -13.22679 -13.13663 -12.98211 -12.78940 -12.65161 -12.38097 -12.16275 -11.93532 -11.83259 -11.38950 -11.25536 -11.23612 -11.00555 -10.72243 -10.57776 -10.48595 -9.85839 -9.63900 -9.52672 -9.03699 -9.00069 -8.60233 -8.49180 -6.92042 -6.28888 -4.00667 1.12298 1.90376 2.23903 2.66117 2.88403 3.14350 3.34067 3.50568 3.52722 3.62653 3.87647 4.00197 4.04726 4.20282 4.33176 4.38199 4.46668 4.58189 4.59241 4.67334 4.69071 4.78166 4.84402 4.92697 5.03917 5.10184 5.10693 5.15941 5.20694 5.37060 5.38421 5.50912 5.67295 5.77540 5.80991 5.83066 6.00530 6.09933 6.29622 6.47726 6.72725 7.25972 7.37100 7.94133 8.14155 8.38458 8.41430 9.17336 10.80278 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.001953 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.000534 B =14337.094081 C =15245.752151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.615 5.615 3 C 0.090 3.910 4 C 0.090 3.910 5 H 0.116 0.884 6 O -0.552 6.552 7 C 0.032 3.968 8 N -0.678 5.678 9 C 0.135 3.865 10 C -0.019 4.019 11 C -0.027 4.027 12 N -0.271 5.271 13 N -0.086 5.086 14 N -0.290 5.290 15 C 0.077 3.923 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.120 4.120 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.364 0.636 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.347 0.653 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.191 0.809 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 31.448 1.584 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.350 5.350 3 C -0.035 4.035 4 C 0.030 3.970 5 H 0.134 0.866 6 O -0.356 6.356 7 C -0.097 4.097 8 N -0.310 5.310 9 C 0.004 3.996 10 C -0.152 4.152 11 C -0.185 4.185 12 N -0.136 5.136 13 N -0.065 5.065 14 N -0.085 5.085 15 C -0.064 4.064 16 C 0.320 3.680 17 O -0.392 6.392 18 C -0.271 4.271 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.210 0.790 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.208 0.792 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.011 30.919 3.438 31.126 hybrid contribution -1.937 0.314 -1.650 2.564 sum -0.926 31.233 1.787 31.298 Atomic orbital electron populations 1.21812 0.79203 1.02803 1.02300 1.47632 1.06994 1.05045 1.75355 1.22013 0.99085 0.85854 0.96501 1.22525 0.84614 0.96350 0.93533 0.86590 1.86722 1.29054 1.63302 1.56474 1.22634 1.00724 0.96673 0.89715 1.60337 1.29203 1.30930 1.10561 1.20338 1.00432 0.90479 0.88320 1.22036 0.93460 1.03957 0.95707 1.23432 0.99513 1.04502 0.91055 1.75125 1.08934 1.11532 1.17984 1.78334 1.01470 1.20333 1.06398 1.47223 1.14489 1.38082 1.08662 1.22279 0.77785 1.02224 1.04125 1.20331 0.87918 0.84676 0.75046 1.90692 1.13675 1.86833 1.48032 1.23303 1.03083 0.95105 1.05584 1.84786 1.11956 0.97545 1.97410 1.22303 0.94850 0.90888 1.58785 0.89409 1.24718 0.98564 0.94879 0.93180 1.69941 1.34790 0.98873 1.48070 0.86731 0.85333 0.79787 0.79975 1.19176 1.19956 1.15934 0.91969 0.90737 0.91709 0.88749 0.90615 0.79002 0.89217 0.94696 0.83393 0.87719 0.93932 0.79158 0.88777 0.87791 0.88672 0.88496 0.88558 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 9.74 59.85 0.58 1.32 16 2 N -0.61 -7.45 2.80 -181.57 -0.51 -7.96 16 3 C 0.09 0.80 5.14 -4.04 -0.02 0.78 16 4 C 0.09 0.77 3.48 -26.73 -0.09 0.67 16 5 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 6 O -0.55 -4.32 12.08 -35.23 -0.43 -4.75 16 7 C 0.03 0.18 5.36 -3.83 -0.02 0.16 16 8 N -0.68 -4.45 6.49 -115.07 -0.75 -5.20 16 9 C 0.14 0.67 5.91 -4.97 -0.03 0.64 16 10 C -0.02 -0.15 6.51 -82.09 -0.53 -0.68 16 11 C -0.03 -0.26 11.99 -17.74 -0.21 -0.47 16 12 N -0.27 -3.37 12.41 30.24 0.38 -2.99 16 13 N -0.09 -0.98 13.17 60.35 0.79 -0.19 16 14 N -0.29 -2.26 3.74 -63.79 -0.24 -2.50 16 15 C 0.08 0.22 11.21 59.84 0.67 0.89 16 16 C 0.53 9.28 7.69 -10.98 -0.08 9.19 16 17 O -0.52 -10.77 15.44 5.56 0.09 -10.69 16 18 C -0.12 -2.32 4.71 36.00 0.17 -2.15 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 24 Si 0.86 21.83 27.74 -169.99 -4.71 17.12 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 28 H 0.06 0.56 8.01 -51.93 -0.42 0.14 16 29 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16 30 H 0.06 0.38 7.89 -51.93 -0.41 -0.03 16 31 H 0.09 0.99 7.42 -51.93 -0.39 0.60 16 32 H 0.08 0.42 7.89 -51.93 -0.41 0.01 16 33 H 0.36 1.30 9.05 45.56 0.41 1.71 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.12 8.14 -51.93 -0.42 -0.31 16 36 H 0.35 2.30 8.28 -39.29 -0.33 1.98 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.13 7.32 -51.93 -0.38 -0.25 16 39 H 0.19 1.37 8.06 -52.48 -0.42 0.94 16 40 H 0.09 0.19 8.14 -51.92 -0.42 -0.24 16 41 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.05 7.23 -51.93 -0.38 -0.33 16 43 H 0.10 1.79 8.11 -51.91 -0.42 1.37 16 44 H 0.10 1.72 7.40 -51.91 -0.38 1.33 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -38.73 392.91 -6.00 -44.73 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.97 Total: -0.50 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 0.64 Total: -1.61 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.45 Total: -44.59 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.34 Total: -15.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.73 -6.00 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677060381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.682 kcal (2) G-P(sol) polarization free energy of solvation -38.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds