Wall clock time and date at job start Wed Apr 1 2020 02:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 6 6 O 1.42897 * 109.46977 * 300.00294 * 4 3 2 7 7 C 1.52996 * 109.47245 * 180.02562 * 4 3 2 8 8 N 1.46892 * 109.47505 * 184.99847 * 7 4 3 9 9 C 1.46905 * 111.00369 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.46996 * 180.02562 * 9 8 7 11 11 C 1.35347 * 126.91395 * 94.68852 * 10 9 8 12 12 N 1.33772 * 106.49795 * 179.90371 * 11 10 9 13 13 N 1.28632 * 108.88601 * 0.36221 * 12 11 10 14 14 N 1.28722 * 110.17776 * 359.77012 * 13 12 11 15 15 C 1.46493 * 125.86865 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 17 17 O 1.21279 * 120.00031 * 180.02562 * 16 2 1 18 18 C 1.50699 * 119.99563 * 0.02562 * 16 2 1 19 19 S 1.81004 * 109.46896 * 179.97438 * 18 16 2 20 20 C 1.76205 * 99.99950 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00211 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99841 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99716 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00102 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47028 * 89.99849 * 24 22 20 26 26 H 1.48506 * 109.47024 * 210.00175 * 24 22 20 27 27 H 1.48500 * 109.47007 * 329.99819 * 24 22 20 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 32 32 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 33 33 H 0.96703 * 114.00499 * 299.99593 * 6 4 3 34 34 H 1.09001 * 109.47044 * 305.00068 * 7 4 3 35 35 H 1.09000 * 109.47161 * 64.99629 * 7 4 3 36 36 H 1.00904 * 111.00336 * 303.95512 * 8 7 4 37 37 H 1.09002 * 109.46613 * 299.99926 * 9 8 7 38 38 H 1.08991 * 109.46861 * 59.99768 * 9 8 7 39 39 H 1.08005 * 126.75569 * 0.03239 * 11 10 9 40 40 H 1.09008 * 109.46991 * 270.02439 * 15 14 13 41 41 H 1.09000 * 109.47627 * 30.02197 * 15 14 13 42 42 H 1.09003 * 109.47377 * 150.02616 * 15 14 13 43 43 H 1.09004 * 109.47017 * 299.99442 * 18 16 2 44 44 H 1.09002 * 109.47507 * 59.99434 * 18 16 2 45 45 H 0.97001 * 119.99678 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 3.0416 0.9508 1.9565 6 8 1.2038 1.8813 2.1161 7 6 3.2170 3.0357 1.4426 8 7 3.5663 3.3995 2.8222 9 6 4.3035 4.6695 2.8612 10 6 4.6443 5.0088 4.2894 11 6 5.7986 4.7287 4.9383 12 7 5.6645 5.2125 6.1782 13 7 4.5011 5.7495 6.2920 14 7 3.8556 5.6498 5.1828 15 6 2.5000 6.1446 4.9312 16 6 2.1389 -1.1672 0.0005 17 8 3.3517 -1.1672 0.0010 18 6 1.3854 -2.4723 0.0005 19 16 2.5616 -3.8480 0.0005 20 6 1.4415 -5.2082 -0.0003 21 1 0.3762 -5.0306 -0.0001 22 6 1.9283 -6.5081 -0.0010 23 7 1.0914 -7.5242 -0.0011 24 14 3.7708 -6.8154 -0.0019 25 1 4.2596 -6.8974 1.3979 26 1 4.0592 -8.0926 -0.7027 27 1 4.4582 -5.7006 -0.7018 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 3.1499 1.1384 -0.5137 32 1 1.6085 2.0284 -0.5138 33 1 0.6267 2.5440 1.7126 34 1 4.1277 2.9298 0.8531 35 1 2.5917 3.8158 1.0083 36 1 2.7434 3.4407 3.4048 37 1 5.2218 4.5745 2.2817 38 1 3.6862 5.4611 2.4367 39 1 6.6596 4.2171 4.5340 40 1 1.7777 5.3653 5.1749 41 1 2.3120 7.0210 5.5514 42 1 2.4013 6.4154 3.8800 43 1 0.7585 -2.5298 0.8904 44 1 0.7590 -2.5302 -0.8896 45 1 1.4316 -8.4326 -0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677060381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:22 Heat of formation + Delta-G solvation = -9.699003 kcal Electronic energy + Delta-G solvation = -26885.681412 eV Core-core repulsion = 22872.940617 eV Total energy + Delta-G solvation = -4012.740795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.26798 -40.99499 -39.02807 -36.92799 -36.04058 -35.45100 -34.67754 -32.93653 -31.89565 -30.16574 -28.88912 -27.93929 -27.84800 -26.72148 -24.74525 -23.61797 -22.72393 -21.71476 -20.77186 -19.58118 -18.34544 -18.14794 -17.80944 -17.65713 -17.29299 -17.15488 -16.82963 -16.64969 -15.94387 -15.71574 -15.67738 -15.44168 -14.94991 -14.84195 -14.50734 -14.31299 -14.17980 -13.83681 -13.75501 -13.60126 -13.54828 -13.35414 -13.29907 -13.02460 -12.88105 -12.73755 -12.54460 -12.45324 -12.03769 -11.89595 -11.86726 -11.33687 -11.17835 -11.07971 -10.89708 -10.53207 -10.28390 -9.57980 -9.39488 -9.00617 -8.52251 -6.23073 0.52259 0.98209 1.31117 1.45526 1.47155 1.52169 1.54178 1.56280 2.11526 2.24591 2.68475 2.85906 3.08003 3.42771 3.52860 3.63415 3.65218 3.83857 3.96385 4.08201 4.10514 4.13959 4.20603 4.23234 4.34766 4.41668 4.46311 4.48022 4.61709 4.63170 4.70976 4.77595 4.82218 4.88293 5.00767 5.13794 5.19603 5.57068 5.60643 5.70042 5.93234 6.10337 6.24299 6.31371 6.92936 6.94327 7.11812 7.45214 8.60055 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.001953 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.000534 B =14337.094081 C =15245.752151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.601 5.601 3 C 0.086 3.914 4 C 0.102 3.898 5 H 0.062 0.938 6 O -0.565 6.565 7 C 0.043 3.957 8 N -0.699 5.699 9 C 0.142 3.858 10 C -0.008 4.008 11 C -0.051 4.051 12 N -0.314 5.314 13 N -0.123 5.123 14 N -0.281 5.281 15 C 0.064 3.936 16 C 0.529 3.471 17 O -0.562 6.562 18 C -0.106 4.106 19 S -0.179 6.179 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.916 5.916 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.387 0.613 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.347 0.653 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.204 0.796 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 34.290 0.008 34.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.333 5.333 3 C -0.037 4.037 4 C 0.041 3.959 5 H 0.081 0.919 6 O -0.372 6.372 7 C -0.087 4.087 8 N -0.332 5.332 9 C 0.011 3.989 10 C -0.142 4.142 11 C -0.210 4.210 12 N -0.179 5.179 13 N -0.102 5.102 14 N -0.076 5.076 15 C -0.075 4.075 16 C 0.316 3.684 17 O -0.440 6.440 18 C -0.257 4.257 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.236 0.764 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.220 0.780 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.214 33.824 1.869 33.877 hybrid contribution -1.799 -0.419 -1.176 2.190 sum -2.013 33.406 0.692 33.473 Atomic orbital electron populations 1.22089 0.76876 1.04685 1.03099 1.47646 1.08456 1.04502 1.72731 1.22315 0.99014 0.85061 0.97271 1.22139 0.84909 0.96641 0.92188 0.91938 1.86686 1.29113 1.64506 1.56878 1.22507 1.00882 0.95876 0.89389 1.60246 1.29597 1.32124 1.11255 1.20423 1.01245 0.90775 0.86421 1.22434 0.92583 1.02489 0.96658 1.23860 1.01163 1.05206 0.90776 1.75045 1.10019 1.13014 1.19779 1.78229 1.01846 1.21880 1.08218 1.47598 1.15550 1.36808 1.07651 1.22746 0.75529 1.02846 1.06422 1.19996 0.87284 0.85521 0.75599 1.90674 1.15235 1.87463 1.50675 1.23278 1.01733 0.93955 1.06694 1.84699 1.13910 0.99035 1.97548 1.22443 0.94348 0.92506 1.58266 0.91996 1.25568 1.02769 0.94783 0.92911 1.70016 1.36738 0.99513 1.49109 0.85869 0.80215 0.80145 0.80153 1.18905 1.18185 1.16014 0.91650 0.91553 0.87252 0.90430 0.85557 0.76380 0.89488 0.90740 0.83443 0.87016 0.90627 0.77960 0.87671 0.87037 0.85431 0.87801 0.87019 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 9.74 127.77 1.25 2.31 16 2 N -0.60 -13.05 2.80 -846.75 -2.37 -15.42 16 3 C 0.09 1.26 5.14 86.38 0.44 1.70 16 4 C 0.10 1.48 3.48 30.59 0.11 1.59 16 5 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 6 O -0.56 -6.89 12.08 -148.98 -1.80 -8.69 16 7 C 0.04 0.32 5.36 86.30 0.46 0.79 16 8 N -0.70 -7.22 6.49 -517.96 -3.36 -10.58 16 9 C 0.14 0.94 5.91 85.56 0.51 1.45 16 10 C -0.01 -0.11 6.51 41.35 0.27 0.16 16 11 C -0.05 -0.98 11.99 83.73 1.00 0.02 16 12 N -0.31 -8.14 12.41 -58.26 -0.72 -8.86 16 13 N -0.12 -2.84 13.17 37.02 0.49 -2.35 16 14 N -0.28 -4.00 3.74 -355.73 -1.33 -5.33 16 15 C 0.06 0.19 11.21 127.77 1.43 1.62 16 16 C 0.53 18.06 7.69 87.66 0.67 18.74 16 17 O -0.56 -23.58 15.44 -3.02 -0.05 -23.62 16 18 C -0.11 -4.05 4.71 71.24 0.34 -3.72 16 19 S -0.18 -9.14 18.55 -56.49 -1.05 -10.19 16 20 C -0.53 -31.01 10.04 67.95 0.68 -30.32 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.67 5.50 84.86 0.47 3.14 16 23 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 24 Si 0.91 45.45 27.74 68.60 1.90 47.36 16 25 H -0.26 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 28 H 0.06 0.95 8.01 -2.39 -0.02 0.93 16 29 H 0.07 1.09 6.44 -2.39 -0.02 1.08 16 30 H 0.11 0.65 7.89 -2.38 -0.02 0.63 16 31 H 0.08 1.47 7.42 -2.39 -0.02 1.45 16 32 H 0.13 0.61 7.89 -2.39 -0.02 0.59 16 33 H 0.39 0.70 9.05 -74.06 -0.67 0.03 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.35 3.58 8.28 -89.69 -0.74 2.83 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.04 7.32 -2.39 -0.02 0.03 16 39 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 41 H 0.11 0.18 8.14 -2.39 -0.02 0.17 16 42 H 0.13 -0.46 7.23 -2.39 -0.02 -0.48 16 43 H 0.10 3.81 8.11 -2.39 -0.02 3.79 16 44 H 0.11 3.90 7.40 -2.39 -0.02 3.88 16 45 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -90.00 392.91 -0.78 -90.78 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -0.42 Total: 5.14 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 7.63 Total: -2.53 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -6.99 Total: -98.23 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.85 Total: -32.32 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.19 kcal Total: -90.00 -0.78 -90.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677060381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.081 kcal (2) G-P(sol) polarization free energy of solvation -90.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds