Wall clock time and date at job start Wed Apr 1 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47076 * 2 1 4 4 C 1.35629 * 125.67353 * 262.01555 * 3 2 1 5 5 C 1.35521 * 108.85093 * 180.29242 * 4 3 2 6 6 Cl 1.73593 * 126.07329 * 179.71367 * 5 4 3 7 7 C 1.39893 * 107.84963 * 359.72862 * 5 4 3 8 8 C 1.37630 * 125.67654 * 81.84752 * 3 2 1 9 9 C 1.46673 * 126.22471 * 359.97438 * 8 3 2 10 10 O 1.21694 * 119.99995 * 2.61445 * 9 8 3 11 11 N 1.34780 * 119.99929 * 182.61654 * 9 8 3 12 12 C 1.46502 * 119.99903 * 176.22274 * 11 9 8 13 13 C 1.53002 * 109.46872 * 179.97438 * 12 11 9 14 14 N 1.46502 * 109.46872 * 180.02562 * 13 12 11 15 15 C 1.36930 * 119.99958 * 87.91985 * 14 13 12 16 16 H 1.07997 * 120.00402 * 321.80904 * 15 14 13 17 17 C 1.38814 * 120.00060 * 141.81768 * 15 14 13 18 18 N 1.31620 * 119.99847 * 336.60705 * 17 15 14 19 19 Si 1.86801 * 120.00239 * 156.60897 * 17 15 14 20 20 H 1.48494 * 109.47292 * 59.99769 * 19 17 15 21 21 H 1.48498 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46865 * 299.99598 * 19 17 15 23 23 C 1.46501 * 120.00005 * 267.91811 * 14 13 12 24 24 C 1.53000 * 109.46953 * 89.99636 * 23 14 13 25 25 O 1.42905 * 109.46915 * 65.00559 * 24 23 14 26 26 C 1.42895 * 113.99894 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47248 * 300.00586 * 1 2 3 28 28 H 1.09003 * 109.46437 * 60.00343 * 1 2 3 29 29 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47248 * 239.99414 * 2 1 3 31 31 H 1.09003 * 109.46437 * 119.99656 * 2 1 3 32 32 H 1.07997 * 125.57468 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.44981 * 179.97438 * 7 5 4 34 34 H 0.97000 * 119.99867 * 356.22106 * 11 9 8 35 35 H 1.08992 * 109.47232 * 59.99501 * 12 11 9 36 36 H 1.08998 * 109.46695 * 299.99625 * 12 11 9 37 37 H 1.09006 * 109.47169 * 299.99723 * 13 12 11 38 38 H 1.09001 * 109.47531 * 59.99893 * 13 12 11 39 39 H 0.97006 * 119.99952 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.47312 * 210.00034 * 23 14 13 41 41 H 1.09008 * 109.46906 * 330.00069 * 23 14 13 42 42 H 1.09004 * 109.47237 * 184.99871 * 24 23 14 43 43 H 1.09001 * 109.47578 * 305.00190 * 24 23 14 44 44 H 1.08995 * 109.47484 * 59.99911 * 26 25 24 45 45 H 1.08996 * 109.47087 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.46731 * 299.99532 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4263 2.0759 -1.0911 5 6 2.8134 3.3150 -0.7018 6 17 3.4211 4.5686 -1.7375 7 6 2.6367 3.4041 0.6831 8 6 2.1365 2.1909 1.1067 9 6 1.7977 1.8273 2.4867 10 8 1.4119 0.7018 2.7422 11 7 1.9136 2.7399 3.4718 12 6 1.4971 2.4028 4.8353 13 6 1.7328 3.6046 5.7523 14 7 1.3169 3.2673 7.1160 15 6 2.2037 2.6762 7.9758 16 1 2.8975 1.9338 7.6099 17 6 2.2108 3.0311 9.3177 18 7 1.7369 4.2007 9.6917 19 14 2.8930 1.8487 10.5930 20 1 4.3182 1.5623 10.2901 21 1 2.7874 2.4606 11.9419 22 1 2.1161 0.5836 10.5606 23 6 -0.0478 3.5624 7.5597 24 6 -0.9513 2.3642 7.2616 25 8 -0.5325 1.2451 8.0456 26 6 -1.3154 0.0672 7.8419 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.4449 1.7011 -2.1038 33 1 2.8521 4.2614 1.3035 34 1 2.2728 3.6198 3.2779 35 1 2.0788 1.5534 5.1933 36 1 0.4381 2.1450 4.8384 37 1 2.7920 3.8620 5.7491 38 1 1.1514 4.4543 5.3944 39 1 1.7422 4.4488 10.6295 40 1 -0.0467 3.7588 8.6318 41 1 -0.4205 4.4392 7.0300 42 1 -1.9824 2.6160 7.5097 43 1 -0.8833 2.1122 6.2033 44 1 -1.2554 -0.2326 6.7957 45 1 -0.9339 -0.7361 8.4721 46 1 -2.3540 0.2718 8.1023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677321661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:53 Heat of formation + Delta-G solvation = -16.736394 kcal Electronic energy + Delta-G solvation = -28048.381967 eV Core-core repulsion = 24000.999550 eV Total energy + Delta-G solvation = -4047.382417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70292 -38.97368 -37.27444 -36.61211 -35.77648 -34.63427 -33.84759 -31.48215 -30.18558 -29.44576 -29.03856 -27.22913 -25.63383 -24.19385 -23.82245 -22.67426 -21.57598 -20.73694 -20.45689 -19.48941 -18.04801 -16.79035 -16.09679 -15.79959 -15.66477 -15.49775 -15.01028 -14.79547 -14.76279 -14.53484 -14.30947 -14.00766 -13.81464 -13.54261 -13.34438 -13.21231 -12.97069 -12.88807 -12.61150 -12.31380 -11.97629 -11.82023 -11.61412 -11.46773 -11.19238 -11.04840 -10.89060 -10.74919 -10.67328 -10.58697 -10.07200 -9.99174 -9.87780 -9.73082 -8.95233 -8.88655 -8.70710 -8.39823 -8.35590 -6.58748 -5.75087 -3.30168 1.27854 1.91159 2.24942 2.63020 3.35781 3.44341 3.48129 3.51037 3.59263 4.43060 4.56142 4.61999 4.70111 4.73899 4.77526 4.97364 5.03988 5.28912 5.36043 5.41504 5.53464 5.56010 5.71540 5.75893 5.78975 5.82517 5.88323 5.88510 6.07223 6.14916 6.22770 6.25337 6.30851 6.53212 6.56670 6.64370 6.65409 6.69791 6.81811 6.94109 7.58816 7.66986 7.89475 8.08452 8.30697 8.57519 9.20876 9.84697 10.39214 11.27849 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002591 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.211826 B =10802.335733 C =11848.972153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.400 5.400 4 C 0.027 3.973 5 C -0.122 4.122 6 Cl -0.053 7.053 7 C -0.133 4.133 8 C -0.027 4.027 9 C 0.582 3.418 10 O -0.548 6.548 11 N -0.708 5.708 12 C 0.098 3.902 13 C 0.137 3.863 14 N -0.569 5.569 15 C -0.251 4.251 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.145 3.855 24 C 0.043 3.957 25 O -0.354 6.354 26 C 0.030 3.970 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.154 0.846 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.254 0.746 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.024 0.976 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -3.363 -21.346 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.110 4.110 5 C -0.155 4.155 6 Cl -0.025 7.025 7 C -0.159 4.159 8 C -0.141 4.141 9 C 0.368 3.632 10 O -0.427 6.427 11 N -0.358 5.358 12 C -0.027 4.027 13 C 0.009 3.991 14 N -0.288 5.288 15 C -0.380 4.380 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.019 3.981 24 C -0.036 4.036 25 O -0.271 6.271 26 C -0.068 4.068 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.192 0.808 33 H 0.171 0.829 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.755 -4.319 -20.845 21.465 hybrid contribution 0.169 -0.236 0.145 0.325 sum -2.585 -4.556 -20.700 21.353 Atomic orbital electron populations 1.22079 0.93708 1.03283 1.03051 1.22112 0.96268 0.78722 1.05127 1.44038 1.46047 1.11817 1.05387 1.21669 1.05004 0.91823 0.92459 1.19878 1.12238 0.91522 0.91829 1.98323 1.86684 1.51134 1.66323 1.21237 1.04164 0.97054 0.93457 1.20219 1.13073 0.91876 0.88938 1.16901 0.78268 0.85050 0.83001 1.90796 1.47980 1.20131 1.83808 1.45818 1.64316 1.16242 1.09471 1.22551 0.99713 1.01985 0.78438 1.21010 0.99240 0.92316 0.86498 1.43504 1.07697 1.70376 1.07253 1.18762 1.14751 1.15257 0.89218 0.92573 1.25027 0.98918 0.95006 0.98637 1.70025 1.49078 1.18050 1.15979 0.86482 0.78652 0.81718 0.80520 1.21016 1.21932 1.20548 1.21029 0.82998 0.90501 1.03603 1.23516 0.96896 0.89739 0.93444 1.88216 1.55063 1.19008 1.64838 1.22632 0.94625 0.89763 0.99739 0.91125 0.92392 0.90528 0.89146 0.87291 0.80759 0.82852 0.76613 0.91298 0.92202 0.92603 0.94156 0.93631 0.88274 0.93974 0.95772 0.95201 0.95204 0.90734 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.16 37.16 0.38 -1.07 16 2 C 0.10 0.89 6.10 -4.04 -0.02 0.87 16 3 N -0.40 -4.31 2.76 -112.82 -0.31 -4.62 16 4 C 0.03 0.26 11.35 -16.84 -0.19 0.06 16 5 C -0.12 -1.28 6.66 -39.93 -0.27 -1.55 16 6 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 7 C -0.13 -1.49 10.35 -39.09 -0.40 -1.89 16 8 C -0.03 -0.34 6.88 -81.98 -0.56 -0.90 16 9 C 0.58 8.77 7.78 -12.85 -0.10 8.67 16 10 O -0.55 -9.74 14.20 5.19 0.07 -9.67 16 11 N -0.71 -10.21 5.54 -61.62 -0.34 -10.55 16 12 C 0.10 1.74 6.00 -4.04 -0.02 1.72 16 13 C 0.14 2.63 5.83 -4.04 -0.02 2.61 16 14 N -0.57 -13.45 2.40 -173.23 -0.42 -13.87 16 15 C -0.25 -6.72 8.94 -15.06 -0.13 -6.86 16 16 H 0.06 1.54 7.93 -52.49 -0.42 1.12 16 17 C 0.02 0.67 4.89 -17.43 -0.09 0.59 16 18 N -0.89 -25.27 11.65 55.49 0.65 -24.62 16 19 Si 0.90 22.12 29.61 -169.99 -5.03 17.09 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 C 0.15 3.27 5.77 -4.04 -0.02 3.25 16 24 C 0.04 0.87 6.28 37.16 0.23 1.10 16 25 O -0.35 -7.87 10.18 -35.23 -0.36 -8.23 16 26 C 0.03 0.52 11.01 101.05 1.11 1.63 16 27 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.11 1.21 6.74 -51.93 -0.35 0.86 16 32 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 1.44 7.44 -52.49 -0.39 1.05 16 34 H 0.40 4.68 7.36 -40.82 -0.30 4.38 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 1.13 6.26 -51.93 -0.33 0.80 16 37 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 38 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.10 2.59 5.65 -51.93 -0.29 2.30 16 41 H 0.04 0.86 7.88 -51.92 -0.41 0.45 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.03 0.58 6.26 -51.93 -0.32 0.25 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -31.76 395.41 -8.39 -40.14 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.97 Total: 2.15 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.12 Total: 8.24 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.42 Total: -53.66 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.28 Total: -17.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.76 -8.39 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.408 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds