Wall clock time and date at job start Wed Apr 1 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47076 * 2 1 4 4 C 1.35629 * 125.67353 * 262.01555 * 3 2 1 5 5 C 1.35521 * 108.85093 * 180.29242 * 4 3 2 6 6 Cl 1.73593 * 126.07329 * 179.71367 * 5 4 3 7 7 C 1.39893 * 107.84963 * 359.72862 * 5 4 3 8 8 C 1.37630 * 125.67654 * 81.84752 * 3 2 1 9 9 C 1.46673 * 126.22471 * 359.97438 * 8 3 2 10 10 O 1.21694 * 119.99995 * 2.61445 * 9 8 3 11 11 N 1.34780 * 119.99929 * 182.61654 * 9 8 3 12 12 C 1.46502 * 119.99903 * 176.22274 * 11 9 8 13 13 C 1.53002 * 109.46872 * 179.97438 * 12 11 9 14 14 N 1.46502 * 109.46872 * 180.02562 * 13 12 11 15 15 C 1.36930 * 119.99958 * 87.91985 * 14 13 12 16 16 H 1.07997 * 120.00402 * 321.80904 * 15 14 13 17 17 C 1.38814 * 120.00060 * 141.81768 * 15 14 13 18 18 N 1.31620 * 119.99847 * 336.60705 * 17 15 14 19 19 Si 1.86801 * 120.00239 * 156.60897 * 17 15 14 20 20 H 1.48494 * 109.47292 * 59.99769 * 19 17 15 21 21 H 1.48498 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46865 * 299.99598 * 19 17 15 23 23 C 1.46501 * 120.00005 * 267.91811 * 14 13 12 24 24 C 1.53000 * 109.46953 * 89.99636 * 23 14 13 25 25 O 1.42905 * 109.46915 * 65.00559 * 24 23 14 26 26 C 1.42895 * 113.99894 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47248 * 300.00586 * 1 2 3 28 28 H 1.09003 * 109.46437 * 60.00343 * 1 2 3 29 29 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47248 * 239.99414 * 2 1 3 31 31 H 1.09003 * 109.46437 * 119.99656 * 2 1 3 32 32 H 1.07997 * 125.57468 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.44981 * 179.97438 * 7 5 4 34 34 H 0.97000 * 119.99867 * 356.22106 * 11 9 8 35 35 H 1.08992 * 109.47232 * 59.99501 * 12 11 9 36 36 H 1.08998 * 109.46695 * 299.99625 * 12 11 9 37 37 H 1.09006 * 109.47169 * 299.99723 * 13 12 11 38 38 H 1.09001 * 109.47531 * 59.99893 * 13 12 11 39 39 H 0.97006 * 119.99952 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.47312 * 210.00034 * 23 14 13 41 41 H 1.09008 * 109.46906 * 330.00069 * 23 14 13 42 42 H 1.09004 * 109.47237 * 184.99871 * 24 23 14 43 43 H 1.09001 * 109.47578 * 305.00190 * 24 23 14 44 44 H 1.08995 * 109.47484 * 59.99911 * 26 25 24 45 45 H 1.08996 * 109.47087 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.46731 * 299.99532 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4263 2.0759 -1.0911 5 6 2.8134 3.3150 -0.7018 6 17 3.4211 4.5686 -1.7375 7 6 2.6367 3.4041 0.6831 8 6 2.1365 2.1909 1.1067 9 6 1.7977 1.8273 2.4867 10 8 1.4119 0.7018 2.7422 11 7 1.9136 2.7399 3.4718 12 6 1.4971 2.4028 4.8353 13 6 1.7328 3.6046 5.7523 14 7 1.3169 3.2673 7.1160 15 6 2.2037 2.6762 7.9758 16 1 2.8975 1.9338 7.6099 17 6 2.2108 3.0311 9.3177 18 7 1.7369 4.2007 9.6917 19 14 2.8930 1.8487 10.5930 20 1 4.3182 1.5623 10.2901 21 1 2.7874 2.4606 11.9419 22 1 2.1161 0.5836 10.5606 23 6 -0.0478 3.5624 7.5597 24 6 -0.9513 2.3642 7.2616 25 8 -0.5325 1.2451 8.0456 26 6 -1.3154 0.0672 7.8419 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.4449 1.7011 -2.1038 33 1 2.8521 4.2614 1.3035 34 1 2.2728 3.6198 3.2779 35 1 2.0788 1.5534 5.1933 36 1 0.4381 2.1450 4.8384 37 1 2.7920 3.8620 5.7491 38 1 1.1514 4.4543 5.3944 39 1 1.7422 4.4488 10.6295 40 1 -0.0467 3.7588 8.6318 41 1 -0.4205 4.4392 7.0300 42 1 -1.9824 2.6160 7.5097 43 1 -0.8833 2.1122 6.2033 44 1 -1.2554 -0.2326 6.7957 45 1 -0.9339 -0.7361 8.4721 46 1 -2.3540 0.2718 8.1023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677321661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:52 Heat of formation + Delta-G solvation = -36.396337 kcal Electronic energy + Delta-G solvation = -28049.234486 eV Core-core repulsion = 24000.999550 eV Total energy + Delta-G solvation = -4048.234936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55578 -40.18758 -38.90770 -37.45221 -37.31142 -35.88168 -34.86577 -33.37402 -31.48044 -30.44736 -30.17032 -28.78257 -27.15960 -25.85057 -24.67577 -23.94185 -22.90451 -22.17461 -21.61036 -20.60242 -19.01060 -18.63322 -17.50237 -17.05774 -16.87399 -16.77379 -16.43259 -16.38583 -15.93041 -15.69003 -15.48959 -15.33545 -15.15011 -14.85873 -14.83054 -14.26045 -14.12229 -13.80948 -13.62786 -13.59325 -13.42895 -13.03258 -12.99741 -12.68596 -12.48314 -12.39896 -12.37587 -12.32515 -12.18869 -11.95419 -11.82158 -11.71316 -11.54495 -11.10419 -10.45054 -10.38101 -10.10236 -9.72786 -9.23806 -8.54502 -7.79508 -5.37118 0.34606 1.14231 1.44664 1.46632 1.51261 1.58669 1.72939 2.26687 2.38224 2.60413 3.18556 3.33964 3.62598 3.76547 3.83364 3.96601 4.08040 4.20561 4.22016 4.30078 4.36711 4.40946 4.47515 4.50486 4.56413 4.69773 4.72278 4.73241 4.80790 4.83459 4.88854 4.94607 4.96046 5.11814 5.14838 5.23050 5.37473 5.49472 5.71626 5.73201 5.77669 6.06950 6.46199 6.52512 6.64323 7.15245 7.23420 7.89813 8.39894 9.18734 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002591 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.211826 B =10802.335733 C =11848.972153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 N -0.403 5.403 4 C 0.050 3.950 5 C -0.141 4.141 6 Cl -0.046 7.046 7 C -0.124 4.124 8 C -0.059 4.059 9 C 0.581 3.419 10 O -0.581 6.581 11 N -0.701 5.701 12 C 0.124 3.876 13 C 0.142 3.858 14 N -0.585 5.585 15 C -0.249 4.249 16 H 0.042 0.958 17 C -0.018 4.018 18 N -0.913 5.913 19 Si 0.943 3.057 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.287 1.287 23 C 0.144 3.856 24 C 0.051 3.949 25 O -0.396 6.396 26 C 0.027 3.973 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.212 0.788 33 H 0.166 0.834 34 H 0.414 0.586 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.250 0.750 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 -3.547 -24.023 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.076 5.076 4 C -0.088 4.088 5 C -0.173 4.173 6 Cl -0.018 7.018 7 C -0.151 4.151 8 C -0.172 4.172 9 C 0.369 3.631 10 O -0.463 6.463 11 N -0.352 5.352 12 C -0.002 4.002 13 C 0.015 3.985 14 N -0.305 5.305 15 C -0.379 4.379 16 H 0.060 0.940 17 C -0.215 4.215 18 N -0.557 5.557 19 Si 0.772 3.228 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.213 1.213 23 C 0.018 3.982 24 C -0.028 4.028 25 O -0.314 6.314 26 C -0.070 4.070 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.228 0.772 33 H 0.184 0.816 34 H 0.251 0.749 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.025 -4.489 -23.548 24.162 hybrid contribution 0.246 -0.196 0.821 0.879 sum -2.779 -4.685 -22.727 23.370 Atomic orbital electron populations 1.22022 0.93615 1.03933 1.01902 1.22234 0.96321 0.78096 1.05783 1.44234 1.45847 1.12269 1.05205 1.22273 1.02112 0.91080 0.93315 1.20000 1.13227 0.92395 0.91709 1.98327 1.86632 1.50902 1.65900 1.21471 1.02641 0.96752 0.94231 1.19855 1.15967 0.93193 0.88210 1.17242 0.77360 0.84408 0.84053 1.90775 1.49529 1.21520 1.84505 1.45574 1.64466 1.17050 1.08158 1.21948 0.98448 0.99967 0.79870 1.21038 0.99339 0.93481 0.84667 1.43649 1.07912 1.70526 1.08416 1.18816 1.14465 1.14644 0.90000 0.93995 1.25519 1.00041 0.96048 0.99935 1.70111 1.50731 1.19113 1.15743 0.85742 0.78279 0.79861 0.78898 1.20373 1.21881 1.21323 1.20984 0.83169 0.92426 1.01670 1.23365 0.97350 0.88509 0.93553 1.88139 1.56970 1.20697 1.65636 1.22791 0.95427 0.88312 1.00430 0.94626 0.90966 0.89062 0.85273 0.89811 0.77174 0.81647 0.74910 0.94602 0.93145 0.93034 0.91626 0.94092 0.91824 0.92032 0.93343 0.94513 0.94532 0.90081 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.16 71.98 0.73 -1.84 16 2 C 0.10 1.57 6.10 86.38 0.53 2.10 16 3 N -0.40 -7.91 2.76 -510.86 -1.41 -9.32 16 4 C 0.05 0.77 11.35 83.48 0.95 1.72 16 5 C -0.14 -2.60 6.66 22.04 0.15 -2.45 16 6 Cl -0.05 -0.78 29.30 -2.72 -0.08 -0.86 16 7 C -0.12 -2.56 10.35 22.59 0.23 -2.33 16 8 C -0.06 -1.43 6.88 40.36 0.28 -1.15 16 9 C 0.58 17.63 7.78 86.44 0.67 18.30 16 10 O -0.58 -21.28 14.20 -4.33 -0.06 -21.34 16 11 N -0.70 -20.11 5.54 -467.08 -2.59 -22.70 16 12 C 0.12 4.45 6.00 86.38 0.52 4.97 16 13 C 0.14 5.40 5.83 86.38 0.50 5.90 16 14 N -0.58 -27.90 2.40 -701.99 -1.68 -29.58 16 15 C -0.25 -13.61 8.94 84.03 0.75 -12.86 16 16 H 0.04 2.38 7.93 -2.91 -0.02 2.35 16 17 C -0.02 -0.99 4.89 84.86 0.42 -0.57 16 18 N -0.91 -52.83 11.65 21.65 0.25 -52.58 16 19 Si 0.94 46.23 29.61 68.60 2.03 48.26 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 C 0.14 6.48 5.77 86.38 0.50 6.98 16 24 C 0.05 2.01 6.28 71.98 0.45 2.47 16 25 O -0.40 -17.58 10.18 -148.98 -1.52 -19.10 16 26 C 0.03 0.91 11.01 113.37 1.25 2.16 16 27 H 0.03 0.83 7.55 -2.39 -0.02 0.81 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.13 1.10 8.11 -2.39 -0.02 1.08 16 31 H 0.08 1.85 6.74 -2.39 -0.02 1.83 16 32 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.17 2.82 7.44 -2.91 -0.02 2.80 16 34 H 0.41 9.34 7.36 -92.71 -0.68 8.66 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.91 6.26 -2.39 -0.01 1.90 16 37 H 0.05 2.00 8.06 -2.38 -0.02 1.98 16 38 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 39 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 40 H 0.06 3.39 5.65 -2.39 -0.01 3.37 16 41 H 0.06 2.46 7.88 -2.38 -0.02 2.44 16 42 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.04 1.40 6.26 -2.39 -0.01 1.38 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -70.49 395.41 3.17 -67.32 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.31 Total: 16.51 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 7.92 Total: 23.39 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -5.43 Total: -114.18 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.58 Total: -40.44 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -70.49 3.17 -67.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.923 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds