Wall clock time and date at job start Wed Apr 1 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30018 * 127.33312 * 2 1 4 4 O 1.20659 * 112.29827 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.16038 * 0.02562 * 4 3 2 6 6 C 1.50690 * 126.83171 * 179.97438 * 5 4 3 7 7 F 1.39891 * 109.47443 * 120.02219 * 6 5 4 8 8 F 1.39904 * 109.47174 * 240.02705 * 6 5 4 9 9 C 1.37368 * 106.33700 * 359.73893 * 5 4 3 10 10 C 1.47400 * 128.56200 * 180.23859 * 9 5 4 11 11 O 1.21603 * 119.99733 * 270.15993 * 10 9 5 12 12 N 1.34778 * 119.99942 * 90.16299 * 10 9 5 13 13 C 1.46928 * 120.63184 * 359.71725 * 12 10 9 14 14 C 1.52763 * 109.00691 * 233.58621 * 13 12 10 15 15 C 1.53041 * 109.38303 * 305.58842 * 14 13 12 16 16 C 1.53037 * 109.53825 * 61.24183 * 15 14 13 17 17 H 1.09003 * 109.52544 * 58.60103 * 16 15 14 18 18 C 1.53003 * 109.49676 * 178.68310 * 16 15 14 19 19 N 1.46500 * 109.46875 * 184.83613 * 18 16 15 20 20 C 1.36940 * 119.99595 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00542 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99688 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00243 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99862 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46942 * 60.00332 * 24 22 20 26 26 H 1.48493 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47142 * 300.00201 * 24 22 20 28 28 C 1.46929 * 120.62961 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 32 32 H 1.08997 * 109.47363 * 0.02562 * 6 5 4 33 33 H 1.09001 * 109.58690 * 353.41723 * 13 12 10 34 34 H 1.08988 * 109.58418 * 113.84565 * 13 12 10 35 35 H 1.09000 * 109.56177 * 185.54742 * 14 13 12 36 36 H 1.09005 * 109.38948 * 65.51550 * 14 13 12 37 37 H 1.08998 * 109.46121 * 301.21868 * 15 14 13 38 38 H 1.09002 * 109.44557 * 181.25148 * 15 14 13 39 39 H 1.08994 * 109.46822 * 304.83656 * 18 16 15 40 40 H 1.09000 * 109.47231 * 64.83908 * 18 16 15 41 41 H 0.96995 * 120.00510 * 0.02562 * 19 18 16 42 42 H 0.96999 * 120.00194 * 180.02562 * 23 22 20 43 43 H 1.08996 * 109.58436 * 246.15415 * 28 12 10 44 44 H 1.09001 * 109.58425 * 6.43415 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9712 -1.3245 0.0003 7 9 5.0633 -2.1274 1.1422 8 9 5.0637 -2.1264 -1.1423 9 6 2.3991 -1.1696 0.0057 10 6 2.0401 -2.5992 0.0126 11 8 1.8924 -3.1940 -1.0376 12 7 1.8754 -3.2469 1.1830 13 6 2.0564 -2.5433 2.4601 14 6 3.0595 -3.3150 3.3155 15 6 2.5953 -4.7664 3.4575 16 6 2.5321 -5.4210 2.0756 17 1 3.5152 -5.3778 1.6067 18 6 2.0996 -6.8813 2.2217 19 7 2.1505 -7.5388 0.9135 20 6 1.8046 -8.8586 0.7967 21 1 1.4940 -9.4147 1.6687 22 6 1.8533 -9.4818 -0.4428 23 7 2.2324 -8.8042 -1.5056 24 14 1.3809 -11.2820 -0.6023 25 1 -0.0260 -11.4652 -0.1638 26 1 1.5162 -11.7056 -2.0191 27 1 2.2761 -12.1061 0.2490 28 6 1.5181 -4.6719 1.2061 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 5.7835 -0.5978 0.0009 33 1 2.4348 -1.5383 2.2731 34 1 1.1023 -2.4852 2.9836 35 1 3.1269 -2.8563 4.3021 36 1 4.0380 -3.2913 2.8358 37 1 1.6064 -4.7883 3.9153 38 1 3.2987 -5.3125 4.0861 39 1 2.7716 -7.3920 2.9114 40 1 1.0816 -6.9218 2.6093 41 1 2.4298 -7.0395 0.1302 42 1 2.2661 -9.2396 -2.3718 43 1 0.5190 -4.7913 1.6252 44 1 1.5388 -5.0703 0.1917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713232923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:07 Heat of formation + Delta-G solvation = -59.547530 kcal Electronic energy + Delta-G solvation = -31659.383888 eV Core-core repulsion = 27058.348361 eV Total energy + Delta-G solvation = -4601.035527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.45362 -47.45885 -45.39947 -40.16877 -37.67774 -35.17903 -34.82147 -33.42367 -32.75030 -31.73684 -29.81686 -29.23178 -27.57849 -25.99610 -25.52911 -23.86857 -23.14457 -21.47464 -21.27351 -20.39219 -19.34575 -18.55522 -18.27480 -17.76361 -17.41361 -17.32807 -16.91091 -16.26751 -15.70168 -15.08699 -14.71579 -14.58989 -14.27278 -14.10011 -13.93068 -13.77739 -13.75429 -13.69347 -13.54580 -13.46017 -13.04565 -12.97154 -12.93304 -12.55667 -12.36333 -11.91964 -11.66313 -11.57930 -11.06592 -11.01870 -10.81700 -10.68049 -10.45198 -10.41190 -10.36648 -10.25902 -10.00938 -9.88274 -9.57954 -8.83058 -8.62404 -6.86497 -5.68531 -2.98652 0.57803 1.42942 1.85966 2.27130 2.84912 3.41229 3.48366 3.52305 3.54142 3.57077 3.61568 3.98783 4.20957 4.40024 4.48518 4.61551 4.69359 4.70370 4.89264 4.96855 5.06470 5.11100 5.17992 5.22446 5.30176 5.40246 5.60924 5.62571 5.64439 5.80654 5.84208 5.92994 6.09195 6.13778 6.20405 6.38927 6.50605 6.55414 6.77547 6.88690 7.29142 7.63066 7.74961 8.01796 8.48938 9.59881 10.17648 10.51821 11.53589 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003177 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.666533 B = 8811.273106 C = 9022.144535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.337 5.337 4 O 0.123 5.877 5 C -0.087 4.087 6 C 0.361 3.639 7 F -0.175 7.175 8 F -0.170 7.170 9 C -0.174 4.174 10 C 0.583 3.417 11 O -0.501 6.501 12 N -0.594 5.594 13 C 0.110 3.890 14 C -0.136 4.136 15 C -0.111 4.111 16 C -0.107 4.107 17 H 0.076 0.924 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.244 4.244 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.121 3.879 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.071 0.929 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 23.126 9.528 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 N -0.039 5.039 4 O 0.055 5.945 5 C -0.152 4.152 6 C 0.305 3.695 7 F -0.156 7.156 8 F -0.151 7.151 9 C -0.181 4.181 10 C 0.367 3.633 11 O -0.375 6.375 12 N -0.327 5.327 13 C -0.013 4.013 14 C -0.174 4.174 15 C -0.149 4.149 16 C -0.127 4.127 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.375 4.375 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.000 4.000 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.147 23.891 8.976 25.612 hybrid contribution -0.224 -1.659 -0.383 1.717 sum 1.923 22.232 8.593 23.912 Atomic orbital electron populations 1.20294 0.84369 1.04465 1.04527 1.24868 0.98992 0.85819 1.01167 1.73611 0.88905 1.22964 1.18435 1.84543 1.21723 1.20828 1.67385 1.24992 0.97328 0.85545 1.07308 1.19216 0.91959 0.85431 0.72859 1.93095 1.96553 1.75677 1.50235 1.93175 1.96499 1.75512 1.49923 1.22305 0.92278 0.96418 1.07083 1.16905 0.78354 0.83570 0.84442 1.90942 1.49164 1.66552 1.30852 1.48073 1.68035 1.11732 1.04849 1.21623 0.99821 0.95492 0.84350 1.21877 0.99564 0.96365 0.99581 1.21518 1.01686 0.94583 0.97154 1.21687 0.99815 0.96091 0.95076 0.90572 1.20625 0.97471 0.88672 0.89905 1.42410 1.81358 1.09824 1.04204 1.19153 1.37698 0.87005 0.93645 0.91287 1.24754 1.02283 0.98084 0.95672 1.69663 1.53551 1.35724 0.98774 0.86290 0.78208 0.85187 0.76604 1.21314 1.21706 1.21325 1.21835 0.97610 0.76858 1.03697 0.89075 0.89526 0.89430 0.83862 0.91007 0.91054 0.90828 0.90757 0.91742 0.91328 0.95985 0.96242 0.78076 0.93417 0.91085 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.49 36.01 0.38 -0.28 16 2 C 0.05 0.59 7.59 -79.77 -0.61 -0.02 16 3 N -0.34 -3.75 12.01 34.78 0.42 -3.33 16 4 O 0.12 1.24 11.06 18.64 0.21 1.45 16 5 C -0.09 -0.94 6.88 -34.63 -0.24 -1.18 16 6 C 0.36 3.37 5.67 36.00 0.20 3.57 16 7 F -0.17 -1.86 15.80 2.25 0.04 -1.83 16 8 F -0.17 -2.24 17.32 2.25 0.04 -2.20 16 9 C -0.17 -2.23 4.23 -102.89 -0.43 -2.66 16 10 C 0.58 9.30 7.52 -12.53 -0.09 9.20 16 11 O -0.50 -10.37 16.52 5.28 0.09 -10.28 16 12 N -0.59 -8.39 2.98 -174.34 -0.52 -8.90 16 13 C 0.11 1.14 6.31 -3.93 -0.02 1.12 16 14 C -0.14 -1.37 6.06 -26.83 -0.16 -1.53 16 15 C -0.11 -1.33 5.17 -26.69 -0.14 -1.47 16 16 C -0.11 -1.73 2.37 -90.52 -0.21 -1.94 16 17 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 18 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 19 N -0.73 -18.91 5.38 -59.91 -0.32 -19.24 16 20 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 24 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.12 2.00 5.52 -3.73 -0.02 1.98 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.69 6.26 -51.93 -0.32 0.36 16 34 H 0.07 0.63 8.14 -51.94 -0.42 0.21 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.83 6.57 -51.93 -0.34 0.49 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.39 10.67 6.89 -40.82 -0.28 10.39 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.11 2.21 6.21 -51.93 -0.32 1.89 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -35.33 373.72 -6.23 -41.57 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.89 Total: 5.20 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.62 Total: 2.44 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.30 Total: -59.79 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.29 Total: -8.84 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.33 -6.23 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713232923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.982 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds