Wall clock time and date at job start Wed Apr 1 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30018 * 127.33312 * 2 1 4 4 O 1.20659 * 112.29827 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.16038 * 0.02562 * 4 3 2 6 6 C 1.50690 * 126.83171 * 179.97438 * 5 4 3 7 7 F 1.39891 * 109.47443 * 120.02219 * 6 5 4 8 8 F 1.39904 * 109.47174 * 240.02705 * 6 5 4 9 9 C 1.37368 * 106.33700 * 359.73893 * 5 4 3 10 10 C 1.47400 * 128.56200 * 180.23859 * 9 5 4 11 11 O 1.21603 * 119.99733 * 270.15993 * 10 9 5 12 12 N 1.34778 * 119.99942 * 90.16299 * 10 9 5 13 13 C 1.46928 * 120.63184 * 359.71725 * 12 10 9 14 14 C 1.52763 * 109.00691 * 233.58621 * 13 12 10 15 15 C 1.53041 * 109.38303 * 305.58842 * 14 13 12 16 16 C 1.53037 * 109.53825 * 61.24183 * 15 14 13 17 17 H 1.09003 * 109.52544 * 58.60103 * 16 15 14 18 18 C 1.53003 * 109.49676 * 178.68310 * 16 15 14 19 19 N 1.46500 * 109.46875 * 184.83613 * 18 16 15 20 20 C 1.36940 * 119.99595 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00542 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99688 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00243 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99862 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46942 * 60.00332 * 24 22 20 26 26 H 1.48493 * 109.46949 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47142 * 300.00201 * 24 22 20 28 28 C 1.46929 * 120.62961 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 32 32 H 1.08997 * 109.47363 * 0.02562 * 6 5 4 33 33 H 1.09001 * 109.58690 * 353.41723 * 13 12 10 34 34 H 1.08988 * 109.58418 * 113.84565 * 13 12 10 35 35 H 1.09000 * 109.56177 * 185.54742 * 14 13 12 36 36 H 1.09005 * 109.38948 * 65.51550 * 14 13 12 37 37 H 1.08998 * 109.46121 * 301.21868 * 15 14 13 38 38 H 1.09002 * 109.44557 * 181.25148 * 15 14 13 39 39 H 1.08994 * 109.46822 * 304.83656 * 18 16 15 40 40 H 1.09000 * 109.47231 * 64.83908 * 18 16 15 41 41 H 0.96995 * 120.00510 * 0.02562 * 19 18 16 42 42 H 0.96999 * 120.00194 * 180.02562 * 23 22 20 43 43 H 1.08996 * 109.58436 * 246.15415 * 28 12 10 44 44 H 1.09001 * 109.58425 * 6.43415 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9712 -1.3245 0.0003 7 9 5.0633 -2.1274 1.1422 8 9 5.0637 -2.1264 -1.1423 9 6 2.3991 -1.1696 0.0057 10 6 2.0401 -2.5992 0.0126 11 8 1.8924 -3.1940 -1.0376 12 7 1.8754 -3.2469 1.1830 13 6 2.0564 -2.5433 2.4601 14 6 3.0595 -3.3150 3.3155 15 6 2.5953 -4.7664 3.4575 16 6 2.5321 -5.4210 2.0756 17 1 3.5152 -5.3778 1.6067 18 6 2.0996 -6.8813 2.2217 19 7 2.1505 -7.5388 0.9135 20 6 1.8046 -8.8586 0.7967 21 1 1.4940 -9.4147 1.6687 22 6 1.8533 -9.4818 -0.4428 23 7 2.2324 -8.8042 -1.5056 24 14 1.3809 -11.2820 -0.6023 25 1 -0.0260 -11.4652 -0.1638 26 1 1.5162 -11.7056 -2.0191 27 1 2.2761 -12.1061 0.2490 28 6 1.5181 -4.6719 1.2061 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 5.7835 -0.5978 0.0009 33 1 2.4348 -1.5383 2.2731 34 1 1.1023 -2.4852 2.9836 35 1 3.1269 -2.8563 4.3021 36 1 4.0380 -3.2913 2.8358 37 1 1.6064 -4.7883 3.9153 38 1 3.2987 -5.3125 4.0861 39 1 2.7716 -7.3920 2.9114 40 1 1.0816 -6.9218 2.6093 41 1 2.4298 -7.0395 0.1302 42 1 2.2661 -9.2396 -2.3718 43 1 0.5190 -4.7913 1.6252 44 1 1.5388 -5.0703 0.1917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713232923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:06 Heat of formation + Delta-G solvation = -83.239169 kcal Electronic energy + Delta-G solvation = -31660.411235 eV Core-core repulsion = 27058.348361 eV Total energy + Delta-G solvation = -4602.062874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.29446 -48.32638 -46.26772 -41.37767 -38.96882 -36.67510 -35.91945 -34.62262 -34.01464 -33.14892 -31.52552 -29.98659 -28.53015 -27.30411 -26.88430 -24.98617 -24.78805 -22.74397 -22.17472 -21.63922 -20.43509 -19.46839 -19.23495 -19.06114 -18.54666 -18.30976 -18.17557 -17.47862 -16.75415 -16.66527 -16.27441 -15.67787 -15.44444 -15.36842 -15.16232 -15.04440 -14.71570 -14.65348 -14.49971 -14.41936 -14.23525 -14.15559 -14.00766 -13.76681 -13.75729 -13.03348 -12.91411 -12.74620 -12.69389 -12.47269 -12.21449 -12.11421 -11.94120 -11.87688 -11.66749 -11.44445 -11.35685 -11.17595 -10.97423 -10.93661 -9.82673 -9.00304 -7.93282 -5.23967 -0.31269 0.55506 0.98060 1.09913 1.45854 1.50083 1.56380 1.73651 2.56423 2.66079 2.75012 2.87537 3.14226 3.39366 3.40645 3.55269 3.60541 3.69435 3.84427 3.87353 3.91758 4.05204 4.18191 4.23738 4.28146 4.40263 4.48232 4.55048 4.59945 4.74148 4.75353 4.83814 4.89576 4.97041 5.04162 5.08647 5.23628 5.33039 5.36886 5.47923 5.51748 6.13462 6.26787 6.78098 6.81630 7.32470 8.09201 8.30973 9.29947 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003177 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.666533 B = 8811.273106 C = 9022.144535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.057 3.943 3 N -0.344 5.344 4 O 0.138 5.862 5 C -0.070 4.070 6 C 0.351 3.649 7 F -0.182 7.182 8 F -0.197 7.197 9 C -0.204 4.204 10 C 0.583 3.417 11 O -0.566 6.566 12 N -0.587 5.587 13 C 0.105 3.895 14 C -0.129 4.129 15 C -0.104 4.104 16 C -0.094 4.094 17 H 0.049 0.951 18 C 0.159 3.841 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.080 0.920 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.275 1.275 26 H -0.298 1.298 27 H -0.275 1.275 28 C 0.128 3.872 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.206 0.794 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.028 0.972 40 H 0.031 0.969 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.084 0.916 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 24.724 12.499 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 N -0.046 5.046 4 O 0.071 5.929 5 C -0.135 4.135 6 C 0.297 3.703 7 F -0.163 7.163 8 F -0.178 7.178 9 C -0.211 4.211 10 C 0.369 3.631 11 O -0.444 6.444 12 N -0.318 5.318 13 C -0.016 4.016 14 C -0.167 4.167 15 C -0.142 4.142 16 C -0.114 4.114 17 H 0.068 0.932 18 C 0.032 3.968 19 N -0.392 5.392 20 C -0.379 4.379 21 H 0.098 0.902 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.201 1.201 28 C 0.006 3.994 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.223 0.777 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.066 25.522 12.056 28.301 hybrid contribution -0.195 -2.093 -1.226 2.433 sum 1.871 23.429 10.831 25.879 Atomic orbital electron populations 1.20437 0.82735 1.05671 1.04984 1.25184 1.00002 0.84885 1.00345 1.73601 0.89127 1.22839 1.19006 1.84552 1.21443 1.20127 1.66781 1.25243 0.97331 0.85684 1.05248 1.20036 0.93059 0.85721 0.71509 1.93073 1.96560 1.76144 1.50549 1.93122 1.96595 1.76522 1.51589 1.22062 0.93960 0.95057 1.10057 1.17295 0.77225 0.84688 0.83877 1.90905 1.52148 1.68288 1.33104 1.48130 1.66794 1.10742 1.06118 1.21973 1.01520 0.95684 0.82473 1.21873 0.98496 0.95053 1.01301 1.21500 1.03261 0.95522 0.93900 1.21534 0.97842 0.94215 0.97782 0.93244 1.20839 0.98085 0.90610 0.87227 1.42681 1.81186 1.09382 1.05921 1.19649 1.36105 0.88209 0.93932 0.90166 1.25653 1.03246 1.02697 0.95447 1.69865 1.55779 1.37568 0.99077 0.85169 0.78385 0.79822 0.76125 1.20116 1.22449 1.20091 1.21533 0.98521 0.78521 1.00869 0.88963 0.87154 0.89325 0.77749 0.89703 0.88420 0.86984 0.92045 0.89831 0.90373 0.95419 0.95143 0.79853 0.94162 0.89823 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.49 71.24 0.75 -0.49 16 2 C 0.06 1.19 7.59 45.16 0.34 1.53 16 3 N -0.34 -6.97 12.01 -44.78 -0.54 -7.50 16 4 O 0.14 2.49 11.06 76.96 0.85 3.34 16 5 C -0.07 -1.41 6.88 25.48 0.18 -1.24 16 6 C 0.35 6.06 5.67 71.23 0.40 6.46 16 7 F -0.18 -3.67 15.80 44.97 0.71 -2.95 16 8 F -0.20 -5.30 17.32 44.97 0.78 -4.52 16 9 C -0.20 -5.16 4.23 -18.74 -0.08 -5.24 16 10 C 0.58 19.29 7.52 86.66 0.65 19.95 16 11 O -0.57 -25.33 16.52 -4.04 -0.07 -25.39 16 12 N -0.59 -16.60 2.98 -823.73 -2.45 -19.06 16 13 C 0.10 1.90 6.31 86.22 0.54 2.44 16 14 C -0.13 -2.19 6.06 30.53 0.19 -2.01 16 15 C -0.10 -2.21 5.17 30.62 0.16 -2.05 16 16 C -0.09 -3.05 2.37 -10.73 -0.03 -3.07 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 6.33 5.65 86.38 0.49 6.82 16 19 N -0.75 -39.93 5.38 -343.45 -1.85 -41.78 16 20 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 21 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 23 N -0.97 -63.29 13.06 21.65 0.28 -63.01 16 24 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 27 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 28 C 0.13 4.37 5.52 86.35 0.48 4.85 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.21 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.38 6.26 -2.39 -0.01 1.37 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.24 6.57 -2.38 -0.02 1.23 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.37 21.78 6.89 -92.71 -0.64 21.14 16 42 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 43 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.05 2.44 6.21 -2.39 -0.01 2.43 16 Total: -1.00 -82.22 373.72 5.53 -76.69 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.41 Total: 24.17 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.37 Total: 10.27 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -4.56 Total: -131.35 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.78 Total: -22.05 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.49 Total: -7.48 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -82.22 5.53 -76.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713232923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.545 kcal (2) G-P(sol) polarization free energy of solvation -82.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds