Wall clock time and date at job start Wed Apr 1 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30018 * 127.33312 * 2 1 4 4 O 1.20659 * 112.29827 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.16038 * 0.02562 * 4 3 2 6 6 C 1.50690 * 126.83171 * 179.97438 * 5 4 3 7 7 F 1.39891 * 109.47443 * 120.02219 * 6 5 4 8 8 F 1.39904 * 109.47174 * 240.02705 * 6 5 4 9 9 C 1.37368 * 106.33700 * 359.73893 * 5 4 3 10 10 C 1.47400 * 128.56200 * 180.23859 * 9 5 4 11 11 O 1.21603 * 119.99733 * 270.15993 * 10 9 5 12 12 N 1.34778 * 119.99942 * 90.16299 * 10 9 5 13 13 C 1.46928 * 120.63184 * 359.71725 * 12 10 9 14 14 C 1.53621 * 108.54365 * 126.37031 * 13 12 10 15 15 C 1.53042 * 109.23839 * 54.85571 * 14 13 12 16 16 C 1.53034 * 109.53919 * 298.50841 * 15 14 13 17 17 H 1.08999 * 109.50456 * 301.41782 * 16 15 14 18 18 C 1.53002 * 109.52437 * 181.33404 * 16 15 14 19 19 N 1.46504 * 109.47338 * 175.14785 * 18 16 15 20 20 C 1.36939 * 120.00221 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99421 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99957 * 180.02562 * 20 19 18 23 23 N 1.31616 * 119.99739 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47335 * 89.99456 * 24 22 20 26 26 H 1.48499 * 109.47209 * 209.99822 * 24 22 20 27 27 H 1.48498 * 109.46893 * 329.99326 * 24 22 20 28 28 C 1.46929 * 120.62961 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 32 32 H 1.08997 * 109.47363 * 0.02562 * 6 5 4 33 33 H 1.09003 * 109.58357 * 246.20656 * 13 12 10 34 34 H 1.09000 * 109.58253 * 6.62332 * 13 12 10 35 35 H 1.08997 * 109.63184 * 294.86777 * 14 13 12 36 36 H 1.08994 * 109.43029 * 174.72170 * 14 13 12 37 37 H 1.09008 * 109.45548 * 178.48905 * 15 14 13 38 38 H 1.08996 * 109.44974 * 58.52620 * 15 14 13 39 39 H 1.08997 * 109.47272 * 295.14763 * 18 16 15 40 40 H 1.09000 * 109.46894 * 55.15058 * 18 16 15 41 41 H 0.97004 * 119.99895 * 0.02562 * 19 18 16 42 42 H 0.97011 * 119.99444 * 180.02562 * 23 22 20 43 43 H 1.08999 * 109.58708 * 353.37011 * 28 12 10 44 44 H 1.08993 * 109.58822 * 113.65048 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9712 -1.3245 0.0003 7 9 5.0633 -2.1274 1.1422 8 9 5.0637 -2.1264 -1.1423 9 6 2.3991 -1.1696 0.0057 10 6 2.0401 -2.5992 0.0126 11 8 1.8924 -3.1940 -1.0376 12 7 1.8754 -3.2469 1.1830 13 6 2.0564 -2.5433 2.4601 14 6 0.7948 -2.7461 3.3128 15 6 0.5177 -4.2445 3.4549 16 6 0.2674 -4.8521 2.0728 17 1 -0.5774 -4.3494 1.6019 18 6 -0.0423 -6.3434 2.2183 19 7 -0.3951 -6.8989 0.9094 20 6 -0.7141 -8.2254 0.7920 21 1 -0.7052 -8.8621 1.6643 22 6 -1.0479 -8.7518 -0.4483 23 7 -1.0582 -7.9758 -1.5113 24 14 -1.4837 -10.5612 -0.6083 25 1 -2.9458 -10.7370 -0.4172 26 1 -1.0993 -11.0454 -1.9585 27 1 -0.7525 -11.3396 0.4235 28 6 1.5181 -4.6719 1.2061 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 5.7835 -0.5978 0.0009 33 1 2.9228 -2.9500 2.9818 34 1 2.2059 -1.4798 2.2732 35 1 -0.0549 -2.2632 2.8302 36 1 0.9499 -2.3096 4.2994 37 1 -0.3616 -4.3933 4.0818 38 1 1.3781 -4.7306 3.9149 39 1 0.8346 -6.8602 2.6080 40 1 -0.8775 -6.4755 2.9062 41 1 -0.4027 -6.3270 0.1259 42 1 -1.2918 -8.3437 -2.3780 43 1 1.3121 -5.0135 0.1917 44 1 2.3424 -5.2486 1.6255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713232924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:09 Heat of formation + Delta-G solvation = -83.532530 kcal Electronic energy + Delta-G solvation = -31422.702905 eV Core-core repulsion = 26820.627310 eV Total energy + Delta-G solvation = -4602.075595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.28861 -48.31594 -46.27835 -41.37907 -38.96004 -36.67710 -35.92491 -34.63329 -34.01899 -33.13554 -31.50756 -30.00766 -28.52924 -27.30030 -26.88883 -24.98375 -24.81336 -22.75664 -22.22424 -21.49578 -20.58654 -19.43556 -19.23724 -19.05713 -18.53964 -18.31470 -18.15505 -17.49726 -16.80574 -16.70401 -16.01193 -15.87691 -15.43837 -15.33071 -15.16536 -15.13163 -14.71955 -14.65302 -14.46797 -14.41843 -14.25870 -14.15743 -14.00763 -13.79058 -13.76854 -13.03642 -12.93816 -12.74447 -12.71591 -12.47356 -12.20864 -12.11670 -11.95162 -11.89603 -11.68312 -11.45942 -11.36686 -11.17637 -10.98345 -10.95350 -9.83328 -9.00634 -7.94266 -5.24525 -0.30823 0.54358 0.97146 1.11713 1.45790 1.48502 1.56998 1.72501 2.55850 2.65980 2.73802 2.87884 3.14662 3.38924 3.40506 3.54539 3.63133 3.67715 3.83755 3.85216 3.92712 4.01520 4.17226 4.22860 4.25557 4.39173 4.45290 4.53840 4.57875 4.73377 4.75008 4.82481 4.88174 4.95333 5.03848 5.07464 5.20080 5.31623 5.35645 5.46554 5.50750 6.12747 6.26379 6.78470 6.81019 7.32197 8.08864 8.30354 9.29195 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003091 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.517253 B = 9055.272753 C = 9434.337818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.055 3.945 3 N -0.343 5.343 4 O 0.140 5.860 5 C -0.070 4.070 6 C 0.355 3.645 7 F -0.184 7.184 8 F -0.196 7.196 9 C -0.205 4.205 10 C 0.583 3.417 11 O -0.566 6.566 12 N -0.587 5.587 13 C 0.104 3.896 14 C -0.124 4.124 15 C -0.106 4.106 16 C -0.092 4.092 17 H 0.056 0.944 18 C 0.158 3.842 19 N -0.749 5.749 20 C -0.245 4.245 21 H 0.080 0.920 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.975 3.025 25 H -0.285 1.285 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.127 3.873 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.208 0.792 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.054 0.946 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 22.433 12.535 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 N -0.044 5.044 4 O 0.073 5.927 5 C -0.135 4.135 6 C 0.300 3.700 7 F -0.165 7.165 8 F -0.177 7.177 9 C -0.212 4.212 10 C 0.369 3.631 11 O -0.444 6.444 12 N -0.318 5.318 13 C -0.017 4.017 14 C -0.162 4.162 15 C -0.143 4.143 16 C -0.112 4.112 17 H 0.075 0.925 18 C 0.031 3.969 19 N -0.392 5.392 20 C -0.377 4.377 21 H 0.098 0.902 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.804 3.196 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.190 1.190 28 C 0.005 3.995 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.224 0.776 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.681 23.215 12.099 28.666 hybrid contribution -0.646 -2.019 -1.233 2.452 sum 11.035 21.195 10.866 26.251 Atomic orbital electron populations 1.20414 0.83152 1.05496 1.04862 1.25118 0.99834 0.85091 1.00541 1.73602 0.89162 1.22740 1.18921 1.84550 1.21325 1.20206 1.66636 1.25304 0.97361 0.85648 1.05196 1.20020 0.92811 0.85694 0.71449 1.93083 1.96557 1.76168 1.50657 1.93116 1.96570 1.76481 1.51525 1.22054 0.94019 0.94999 1.10131 1.17301 0.77262 0.84674 0.83872 1.90905 1.52096 1.68344 1.33096 1.48123 1.66607 1.10941 1.06132 1.22166 0.99982 0.97123 0.82479 1.21980 0.96700 0.96239 1.01298 1.21514 1.03351 0.95487 0.93991 1.21548 0.96210 0.95753 0.97696 0.92519 1.20845 0.97226 0.91534 0.87245 1.42684 1.82836 1.07771 1.05874 1.19675 1.36947 0.87234 0.93858 0.90204 1.25635 1.03552 1.02411 0.95450 1.69868 1.56933 1.36453 0.99024 0.85110 0.77894 0.79918 0.76670 1.21240 1.22506 1.19044 1.21544 0.97435 0.79537 1.00968 0.89150 0.87088 0.89774 0.77560 0.89026 0.89554 0.91767 0.87006 0.90054 0.90211 0.95460 0.95188 0.79779 0.94169 0.92706 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.49 71.24 0.75 -0.70 16 2 C 0.06 1.21 7.55 45.16 0.34 1.55 16 3 N -0.34 -7.05 12.01 -44.78 -0.54 -7.59 16 4 O 0.14 2.47 11.06 76.96 0.85 3.32 16 5 C -0.07 -1.35 6.98 25.48 0.18 -1.17 16 6 C 0.35 5.32 5.67 71.23 0.40 5.73 16 7 F -0.18 -3.23 17.32 44.97 0.78 -2.45 16 8 F -0.20 -4.66 17.32 44.97 0.78 -3.88 16 9 C -0.20 -5.19 4.19 -18.74 -0.08 -5.27 16 10 C 0.58 19.35 7.52 86.66 0.65 20.00 16 11 O -0.57 -25.36 16.52 -4.04 -0.07 -25.43 16 12 N -0.59 -16.71 2.97 -821.90 -2.44 -19.15 16 13 C 0.10 1.91 6.37 86.51 0.55 2.46 16 14 C -0.12 -1.94 6.10 30.82 0.19 -1.75 16 15 C -0.11 -2.15 5.17 30.62 0.16 -1.99 16 16 C -0.09 -2.90 2.38 -10.70 -0.03 -2.92 16 17 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 18 C 0.16 6.21 5.66 86.38 0.49 6.70 16 19 N -0.75 -39.48 5.38 -343.45 -1.85 -41.33 16 20 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 23 N -0.97 -62.88 13.06 21.65 0.28 -62.60 16 24 Si 0.98 47.60 29.55 68.60 2.03 49.62 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C 0.13 4.39 5.52 86.38 0.48 4.86 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.21 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.40 6.31 -2.39 -0.02 1.39 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.37 21.47 6.89 -92.71 -0.64 20.84 16 42 H 0.25 15.68 8.31 -92.70 -0.77 14.91 16 43 H 0.05 2.48 6.20 -2.39 -0.01 2.47 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -81.46 376.97 5.62 -75.84 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.41 Total: 23.64 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.39 Total: 10.01 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -4.54 Total: -130.66 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.78 Total: -22.11 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.56 Total: -6.33 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -81.46 5.62 -75.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713232924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.696 kcal (2) G-P(sol) polarization free energy of solvation -81.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds