Wall clock time and date at job start Wed Apr 1 2020 02:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 119.99921 * 2 1 4 4 H 1.08002 * 119.99861 * 203.61403 * 3 2 1 5 5 C 1.38810 * 120.00196 * 23.62493 * 3 2 1 6 6 N 1.31625 * 119.99824 * 12.33716 * 5 3 2 7 7 Si 1.86802 * 120.00262 * 192.34347 * 5 3 2 8 8 H 1.48498 * 109.47257 * 89.99556 * 7 5 3 9 9 H 1.48496 * 109.47328 * 209.99719 * 7 5 3 10 10 H 1.48498 * 109.46858 * 329.99800 * 7 5 3 11 11 C 1.46495 * 119.99922 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47196 * 89.99572 * 11 2 1 13 13 C 1.53046 * 109.45878 * 175.00242 * 12 11 2 14 14 C 1.53192 * 109.31060 * 181.37323 * 13 12 11 15 15 N 1.46921 * 108.77436 * 305.35911 * 14 13 12 16 16 C 1.34778 * 120.63378 * 233.58564 * 15 14 13 17 17 O 1.21687 * 119.99863 * 7.19471 * 16 15 14 18 18 C 1.46718 * 120.00232 * 187.19226 * 16 15 14 19 19 O 1.35345 * 126.64398 * 6.48834 * 18 16 15 20 20 C 1.33664 * 107.68505 * 179.97438 * 19 18 16 21 21 N 1.30616 * 109.15503 * 359.97438 * 20 19 18 22 22 C 1.33686 * 108.99413 * 0.02562 * 21 20 19 23 23 C 1.50699 * 126.27206 * 179.97438 * 22 21 20 24 24 F 1.39909 * 109.47028 * 120.02379 * 23 22 21 25 25 F 1.39904 * 109.47434 * 240.02026 * 23 22 21 26 26 C 1.46926 * 118.73692 * 53.86688 * 15 14 13 27 27 C 1.53039 * 109.44914 * 295.06020 * 12 11 2 28 28 H 1.08999 * 109.46684 * 277.28041 * 1 2 3 29 29 H 1.09002 * 109.47336 * 37.27451 * 1 2 3 30 30 H 1.08995 * 109.47401 * 157.28467 * 1 2 3 31 31 H 0.96999 * 119.99795 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47014 * 329.99939 * 11 2 1 33 33 H 1.08997 * 109.47365 * 209.99736 * 11 2 1 34 34 H 1.08992 * 109.45798 * 55.02724 * 12 11 2 35 35 H 1.09000 * 109.50148 * 61.41862 * 13 12 11 36 36 H 1.09005 * 109.49170 * 301.32186 * 13 12 11 37 37 H 1.08997 * 109.58383 * 185.57195 * 14 13 12 38 38 H 1.08994 * 109.70236 * 65.22116 * 14 13 12 39 39 H 1.08001 * 125.42062 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47375 * 0.02562 * 23 22 21 41 41 H 1.08993 * 109.59194 * 65.92348 * 26 15 14 42 42 H 1.09006 * 109.58838 * 186.35208 * 26 15 14 43 43 H 1.09003 * 109.49979 * 298.57596 * 27 12 11 44 44 H 1.09001 * 109.49495 * 58.66748 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1619 1.2250 -0.3747 5 6 1.5429 2.3377 0.4817 6 7 0.4158 2.2548 1.1564 7 14 2.3258 4.0053 0.1724 8 1 1.8104 4.5652 -1.1027 9 1 1.9893 4.9249 1.2887 10 1 3.8002 3.8513 0.0852 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.3239 -2.9679 -1.4453 14 6 3.6054 -3.3868 -2.8917 15 7 2.3259 -3.5380 -3.5978 16 6 2.0315 -4.6810 -4.2485 17 8 2.7668 -5.6453 -4.1474 18 6 0.8246 -4.7625 -5.0788 19 8 -0.0160 -3.7467 -5.3840 20 6 -0.9852 -4.2410 -6.1606 21 7 -0.7765 -5.5169 -6.3465 22 6 0.3331 -5.8761 -5.6931 23 6 0.9310 -7.2585 -5.6441 24 9 2.2262 -7.2254 -6.1722 25 9 0.9796 -7.6990 -4.3171 26 6 1.3760 -2.4172 -3.5863 27 6 1.1171 -2.0111 -2.1275 28 1 -0.3633 0.1302 1.0194 29 1 -0.3634 0.8178 -0.6224 30 1 -0.3634 -0.9479 -0.3968 31 1 -0.0084 3.0597 1.4927 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5133 34 1 2.9645 -0.9124 -1.9817 35 1 2.8018 -3.7731 -0.9284 36 1 4.2654 -2.7590 -0.9372 37 1 4.1415 -4.3358 -2.8995 38 1 4.2070 -2.6233 -3.3849 39 1 -1.8095 -3.6755 -6.5692 40 1 0.3167 -7.9411 -6.2313 41 1 1.7984 -1.5745 -4.1335 42 1 0.4404 -2.7263 -4.0526 43 1 0.6156 -2.8253 -1.6042 44 1 0.4878 -1.1214 -2.1049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713766324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:00 Heat of formation + Delta-G solvation = -72.731363 kcal Electronic energy + Delta-G solvation = -31114.434854 eV Core-core repulsion = 26512.827632 eV Total energy + Delta-G solvation = -4601.607221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.11635 -47.12160 -44.04017 -40.18133 -37.89431 -35.96206 -35.38874 -33.17761 -31.83824 -30.89161 -30.56265 -27.86913 -26.84492 -25.87115 -24.52350 -23.44876 -23.34004 -22.20908 -21.09690 -20.39223 -19.55092 -18.24038 -17.76743 -17.50627 -17.44485 -16.98301 -16.59376 -16.35803 -15.96944 -15.19355 -14.97328 -14.75010 -14.26638 -14.16445 -13.99463 -13.77574 -13.61328 -13.45898 -13.32119 -13.12002 -12.98442 -12.56359 -12.24162 -12.09917 -11.94646 -11.65443 -11.38771 -11.25996 -11.04523 -10.96295 -10.78652 -10.72725 -10.51217 -10.32931 -10.23732 -9.92818 -9.83758 -9.77967 -9.70333 -8.80096 -8.54469 -6.72784 -5.72289 -3.21137 0.24366 1.79402 1.86305 2.66456 2.78635 2.96300 3.35500 3.42279 3.43471 3.76476 3.91897 4.00431 4.47575 4.48838 4.75527 4.76843 4.94460 4.95947 5.04078 5.11376 5.17380 5.33670 5.35748 5.43642 5.57768 5.65240 5.78101 5.84501 5.99532 6.03951 6.15840 6.30258 6.34223 6.45611 6.56891 6.74176 6.79653 6.85020 6.93832 7.11251 7.32024 7.72153 7.73794 7.78781 8.39332 9.23136 9.86857 10.36167 11.31009 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002657 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.006628 B =10536.316711 C =11086.311668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.157 3.843 12 C -0.109 4.109 13 C -0.128 4.128 14 C 0.114 3.886 15 N -0.591 5.591 16 C 0.593 3.407 17 O -0.501 6.501 18 C -0.040 4.040 19 O -0.172 6.172 20 C 0.201 3.799 21 N -0.472 5.472 22 C -0.021 4.021 23 C 0.362 3.638 24 F -0.181 7.181 25 F -0.183 7.183 26 C 0.094 3.906 27 C -0.121 4.121 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.002 0.998 31 H 0.252 0.748 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.263 0.737 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -15.264 -15.247 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.324 5.324 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.030 3.970 12 C -0.131 4.131 13 C -0.166 4.166 14 C -0.007 4.007 15 N -0.323 5.323 16 C 0.378 3.622 17 O -0.377 6.377 18 C -0.097 4.097 19 O -0.058 6.058 20 C -0.024 4.024 21 N -0.199 5.199 22 C -0.146 4.146 23 C 0.307 3.693 24 F -0.162 7.162 25 F -0.165 7.165 26 C -0.028 4.028 27 C -0.159 4.159 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.279 0.721 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.947 -15.955 -15.399 22.259 hybrid contribution 0.498 1.728 0.182 1.807 sum -1.448 -14.227 -15.216 20.882 Atomic orbital electron populations 1.20873 0.82894 0.94919 0.99801 1.43862 1.01687 1.00646 1.86170 1.19169 0.98552 0.85761 1.34808 0.91522 1.25038 0.97921 0.98516 0.98197 1.70064 1.19502 1.27172 1.38578 0.86279 0.78801 0.84300 0.77303 1.21587 1.21801 1.20519 1.20738 0.96099 0.88289 0.91897 1.21881 0.94487 0.95699 1.01014 1.21954 1.01088 0.98802 0.94795 1.21776 0.83421 1.02754 0.92746 1.48074 1.19679 1.14104 1.50442 1.16514 0.82284 0.83879 0.79502 1.90951 1.48237 1.35432 1.63084 1.23290 0.95431 0.86652 1.04364 1.84822 1.31324 1.37314 1.52353 1.28540 0.93044 0.89554 0.91281 1.70166 1.15047 1.12920 1.21781 1.22398 0.95091 0.97091 1.00008 1.19188 0.81208 0.89633 0.79252 1.93074 1.40225 1.97063 1.85853 1.93068 1.96591 1.89711 1.37085 1.22434 0.92456 0.88424 0.99479 1.22061 0.99163 1.01987 0.92671 0.94945 0.94686 0.97994 0.93819 0.94813 0.93445 0.90932 0.91735 0.90473 0.88959 0.90930 0.72130 0.85174 0.90664 0.88924 0.92409 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.81 59.85 0.47 4.20 16 2 N -0.60 -14.30 2.74 -181.12 -0.50 -14.80 16 3 C -0.25 -6.70 9.65 -15.06 -0.15 -6.84 16 4 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 5 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 6 N -0.91 -26.02 10.69 55.49 0.59 -25.42 16 7 Si 0.90 21.40 29.57 -169.99 -5.03 16.37 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.16 3.03 5.13 -4.04 -0.02 3.01 16 12 C -0.11 -1.71 2.36 -90.57 -0.21 -1.93 16 13 C -0.13 -1.67 5.36 -26.61 -0.14 -1.81 16 14 C 0.11 1.42 6.44 -3.71 -0.02 1.40 16 15 N -0.59 -7.77 2.97 -174.04 -0.52 -8.29 16 16 C 0.59 8.43 7.65 -12.83 -0.10 8.33 16 17 O -0.50 -8.21 13.40 5.20 0.07 -8.14 16 18 C -0.04 -0.50 6.81 -36.84 -0.25 -0.75 16 19 O -0.17 -1.69 7.42 4.42 0.03 -1.66 16 20 C 0.20 1.44 13.21 52.25 0.69 2.13 16 21 N -0.47 -4.68 11.26 -10.89 -0.12 -4.80 16 22 C -0.02 -0.25 6.59 -82.47 -0.54 -0.79 16 23 C 0.36 4.03 5.10 36.01 0.18 4.21 16 24 F -0.18 -2.37 16.00 2.25 0.04 -2.33 16 25 F -0.18 -2.43 16.43 2.25 0.04 -2.39 16 26 C 0.09 1.16 6.17 -3.49 -0.02 1.14 16 27 C -0.12 -1.76 4.42 -26.39 -0.12 -1.88 16 28 H 0.03 0.85 7.19 -51.93 -0.37 0.47 16 29 H 0.03 0.87 7.51 -51.93 -0.39 0.48 16 30 H 0.00 0.03 6.30 -51.93 -0.33 -0.30 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.05 4.22 -52.97 -0.22 0.83 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.51 5.91 -51.93 -0.31 1.20 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -32.91 359.09 -6.06 -38.97 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.75 Total: -3.29 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -0.33 Total: 10.37 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.54 Total: -53.31 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.10 Total: -9.80 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.91 -6.06 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713766324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.766 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds