Wall clock time and date at job start Wed Apr 1 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30016 * 127.33478 * 2 1 4 4 O 1.20663 * 112.30317 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15259 * 359.72040 * 4 3 2 6 6 C 1.50699 * 126.82587 * 180.31085 * 5 4 3 7 7 F 1.39895 * 109.47305 * 120.16887 * 6 5 4 8 8 F 1.39907 * 109.46885 * 240.17041 * 6 5 4 9 9 C 1.37350 * 106.34474 * 0.44993 * 5 4 3 10 10 C 1.47398 * 128.56701 * 179.85599 * 9 5 4 11 11 O 1.21606 * 120.00243 * 269.67745 * 10 9 5 12 12 N 1.34777 * 119.99923 * 89.67598 * 10 9 5 13 13 C 1.47023 * 125.65150 * 0.02909 * 12 10 9 14 14 C 1.54319 * 107.27401 * 181.01320 * 13 12 10 15 15 C 1.55165 * 102.94143 * 22.19105 * 14 13 12 16 16 H 1.08998 * 111.00398 * 82.61263 * 15 14 13 17 17 C 1.53000 * 111.00408 * 206.42446 * 15 14 13 18 18 N 1.46505 * 109.47277 * 293.54922 * 17 15 14 19 19 C 1.46491 * 119.99931 * 89.99473 * 18 17 15 20 20 C 1.36934 * 119.99580 * 270.00255 * 18 17 15 21 21 H 1.08004 * 120.00224 * 23.30983 * 20 18 17 22 22 C 1.38808 * 119.99887 * 203.31801 * 20 18 17 23 23 N 1.31623 * 120.00217 * 14.40526 * 22 20 18 24 24 Si 1.86800 * 120.00106 * 194.41056 * 22 20 18 25 25 H 1.48493 * 109.47126 * 59.99715 * 24 22 20 26 26 H 1.48497 * 109.47309 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47243 * 299.99739 * 24 22 20 28 28 C 1.47424 * 125.64792 * 179.97438 * 12 10 9 29 29 H 1.08997 * 109.47220 * 270.03967 * 1 2 3 30 30 H 1.08997 * 109.47469 * 30.04277 * 1 2 3 31 31 H 1.09008 * 109.47114 * 150.03783 * 1 2 3 32 32 H 1.08998 * 109.47093 * 0.16781 * 6 5 4 33 33 H 1.09001 * 109.87990 * 61.59240 * 13 12 10 34 34 H 1.09004 * 109.87768 * 300.43030 * 13 12 10 35 35 H 1.08999 * 110.72124 * 263.82728 * 14 13 12 36 36 H 1.08998 * 110.87614 * 140.62432 * 14 13 12 37 37 H 1.08998 * 109.47108 * 173.54650 * 17 15 14 38 38 H 1.09007 * 109.47048 * 53.54214 * 17 15 14 39 39 H 1.09008 * 109.46623 * 95.19154 * 19 18 17 40 40 H 1.09004 * 109.46862 * 215.18306 * 19 18 17 41 41 H 1.08990 * 109.47919 * 335.19093 * 19 18 17 42 42 H 0.97000 * 120.00147 * 179.97438 * 23 22 20 43 43 H 1.09005 * 110.36747 * 37.07609 * 28 12 10 44 44 H 1.09005 * 110.36975 * 274.76075 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0069 6 6 4.9711 -1.3245 0.0159 7 9 5.0567 -2.1250 1.1599 8 9 5.0701 -2.1288 -1.1246 9 6 2.3992 -1.1696 0.0005 10 6 2.0401 -2.5992 0.0007 11 8 1.8924 -3.1891 -1.0523 12 7 1.8756 -3.2525 1.1680 13 6 2.0222 -2.6641 2.5074 14 6 1.7664 -3.7889 3.5325 15 6 2.0465 -5.0763 2.7129 16 1 3.1140 -5.2941 2.6801 17 6 1.2644 -6.2652 3.2748 18 7 1.7696 -6.5952 4.6098 19 6 1.1808 -5.9628 5.7927 20 6 2.7923 -7.4946 4.7517 21 1 3.4698 -7.6761 3.9303 22 6 2.9583 -8.1733 5.9511 23 7 1.9918 -8.1767 6.8446 24 14 4.5533 -9.0818 6.2973 25 1 5.6860 -8.1220 6.2685 26 1 4.4793 -9.7194 7.6364 27 1 4.7630 -10.1260 5.2623 28 6 1.5176 -4.6752 1.3133 29 1 -0.3633 0.0007 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5133 32 1 5.7834 -0.5976 0.0194 33 1 1.2928 -1.8657 2.6434 34 1 3.0317 -2.2720 2.6315 35 1 0.7326 -3.7686 3.8774 36 1 2.4539 -3.7107 4.3746 37 1 1.3881 -7.1252 2.6166 38 1 0.2074 -6.0066 3.3401 39 1 0.4135 -6.6154 6.2095 40 1 1.9575 -5.7930 6.5384 41 1 0.7332 -5.0099 5.5106 42 1 2.1076 -8.6513 7.6826 43 1 2.0035 -5.2696 0.5394 44 1 0.4359 -4.8010 1.2661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714898873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:32 Heat of formation + Delta-G solvation = -40.440824 kcal Electronic energy + Delta-G solvation = -31150.133547 eV Core-core repulsion = 26549.926548 eV Total energy + Delta-G solvation = -4600.206998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.53307 -47.53903 -45.43527 -40.06371 -37.75011 -35.40107 -35.08937 -33.44312 -32.25857 -30.46761 -29.37140 -29.23837 -27.56716 -26.17569 -25.75814 -24.45192 -22.86465 -21.34514 -21.22196 -19.93060 -19.85939 -18.55904 -18.32944 -17.83822 -17.46560 -17.33778 -16.58443 -16.24919 -16.19137 -15.08726 -14.92706 -14.41550 -14.38391 -13.96188 -13.87788 -13.81976 -13.70346 -13.61784 -13.50952 -13.24194 -13.10115 -12.86042 -12.72071 -12.22879 -11.99777 -11.95379 -11.72364 -11.37810 -11.09758 -10.90697 -10.74904 -10.58666 -10.46309 -10.41964 -10.36628 -10.16229 -10.04326 -9.87795 -9.84174 -8.73816 -8.54501 -6.74694 -5.73277 -3.20279 0.52774 1.38464 1.79896 2.14077 2.77500 3.36018 3.38757 3.44296 3.45406 3.50505 3.58179 3.94779 4.14629 4.33559 4.40899 4.49701 4.64313 4.77383 4.91106 5.03695 5.04950 5.10706 5.18596 5.32930 5.44669 5.46647 5.57267 5.67472 5.83363 5.88443 6.01951 6.10047 6.18854 6.37601 6.45130 6.70425 6.72232 6.85432 7.31960 7.32608 7.58692 7.70621 7.80179 7.85935 8.39210 9.22938 9.86423 10.35071 11.31152 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002941 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.366857 B = 9517.199329 C =10242.849883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.336 5.336 4 O 0.124 5.876 5 C -0.084 4.084 6 C 0.360 3.640 7 F -0.173 7.173 8 F -0.174 7.174 9 C -0.176 4.176 10 C 0.601 3.399 11 O -0.519 6.519 12 N -0.597 5.597 13 C 0.096 3.904 14 C -0.114 4.114 15 C -0.117 4.117 16 H 0.084 0.916 17 C 0.163 3.837 18 N -0.598 5.598 19 C 0.161 3.839 20 C -0.257 4.257 21 H 0.067 0.933 22 C 0.004 3.996 23 N -0.906 5.906 24 Si 0.902 3.098 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.110 3.890 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.078 0.922 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 18.835 -11.886 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.038 5.038 4 O 0.056 5.944 5 C -0.148 4.148 6 C 0.305 3.695 7 F -0.154 7.154 8 F -0.155 7.155 9 C -0.183 4.183 10 C 0.386 3.614 11 O -0.396 6.396 12 N -0.330 5.330 13 C -0.026 4.026 14 C -0.152 4.152 15 C -0.139 4.139 16 H 0.103 0.897 17 C 0.035 3.965 18 N -0.320 5.320 19 C 0.016 3.984 20 C -0.387 4.387 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.551 5.551 24 Si 0.732 3.268 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C -0.012 4.012 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.286 19.724 -12.308 23.250 hybrid contribution 0.832 -1.247 0.343 1.538 sum 1.118 18.477 -11.965 22.041 Atomic orbital electron populations 1.20301 0.84362 1.04757 1.04303 1.24847 0.98978 0.85763 1.01086 1.73614 0.88881 1.22949 1.18369 1.84551 1.21743 1.20764 1.67304 1.24968 0.97251 0.85624 1.06982 1.19232 0.92089 0.85445 0.72733 1.93137 1.96583 1.75716 1.49949 1.93142 1.96493 1.75524 1.50324 1.22222 0.92326 0.96166 1.07606 1.16393 0.78233 0.83463 0.83312 1.90863 1.50937 1.67330 1.30436 1.48451 1.67048 1.12274 1.05202 1.22231 1.01233 0.97331 0.81830 1.22609 1.02686 0.92862 0.96996 1.23235 1.02454 0.96969 0.91241 0.89726 1.20603 0.94153 0.93667 0.88122 1.43815 1.40401 1.47995 0.99769 1.20833 0.97239 0.91774 0.88535 1.19129 1.04044 1.16143 0.99360 0.91500 1.25000 0.97666 0.98452 0.98362 1.70061 1.30561 1.45427 1.09070 0.86371 0.83593 0.79600 0.77199 1.21104 1.21694 1.20907 1.22473 1.00239 0.79308 0.99156 0.89137 0.89458 0.89340 0.83708 0.91942 0.91376 0.90714 0.89553 0.93032 0.94294 0.95231 0.94415 0.97992 0.93731 0.90315 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.49 36.00 0.38 -0.25 16 2 C 0.05 0.59 7.59 -79.77 -0.61 -0.01 16 3 N -0.34 -3.71 12.01 34.78 0.42 -3.30 16 4 O 0.12 1.24 11.06 18.65 0.21 1.45 16 5 C -0.08 -0.88 6.98 -34.63 -0.24 -1.12 16 6 C 0.36 3.20 5.68 36.01 0.20 3.41 16 7 F -0.17 -1.92 16.65 2.25 0.04 -1.89 16 8 F -0.17 -2.02 17.32 2.25 0.04 -1.98 16 9 C -0.18 -2.18 5.42 -102.89 -0.56 -2.74 16 10 C 0.60 8.86 7.66 -12.53 -0.10 8.76 16 11 O -0.52 -9.34 17.36 5.27 0.09 -9.24 16 12 N -0.60 -8.25 3.33 -171.79 -0.57 -8.82 16 13 C 0.10 1.18 6.47 -3.07 -0.02 1.16 16 14 C -0.11 -1.58 5.03 -24.89 -0.13 -1.71 16 15 C -0.12 -1.85 3.29 -88.47 -0.29 -2.14 16 16 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 17 C 0.16 3.07 5.16 -4.04 -0.02 3.04 16 18 N -0.60 -14.10 2.84 -181.12 -0.51 -14.62 16 19 C 0.16 3.71 8.61 59.84 0.52 4.22 16 20 C -0.26 -6.83 9.64 -15.06 -0.15 -6.97 16 21 H 0.07 1.75 7.87 -52.48 -0.41 1.33 16 22 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 23 N -0.91 -25.93 10.81 55.49 0.60 -25.33 16 24 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.11 1.58 6.38 -2.53 -0.02 1.56 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.15 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 35 H 0.07 1.01 7.15 -51.93 -0.37 0.64 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 38 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.03 0.76 7.33 -51.92 -0.38 0.37 16 40 H 0.04 0.94 7.40 -51.93 -0.38 0.56 16 41 H 0.00 0.03 6.16 -51.93 -0.32 -0.29 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 44 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -32.52 376.59 -6.18 -38.70 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -6.02 Total: -4.36 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.11 Total: 7.21 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.07 Total: -52.07 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.30 Total: -7.79 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.52 -6.18 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714898873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.746 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds