Wall clock time and date at job start Wed Apr 1 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30016 * 127.33478 * 2 1 4 4 O 1.20663 * 112.30317 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15259 * 359.72040 * 4 3 2 6 6 C 1.50699 * 126.82587 * 180.31085 * 5 4 3 7 7 F 1.39895 * 109.47305 * 120.16887 * 6 5 4 8 8 F 1.39907 * 109.46885 * 240.17041 * 6 5 4 9 9 C 1.37350 * 106.34474 * 0.44993 * 5 4 3 10 10 C 1.47398 * 128.56701 * 179.85599 * 9 5 4 11 11 O 1.21606 * 120.00243 * 269.67745 * 10 9 5 12 12 N 1.34777 * 119.99923 * 89.67598 * 10 9 5 13 13 C 1.47023 * 125.65150 * 0.02909 * 12 10 9 14 14 C 1.54319 * 107.27401 * 181.01320 * 13 12 10 15 15 C 1.55165 * 102.94143 * 22.19105 * 14 13 12 16 16 H 1.08998 * 111.00398 * 82.61263 * 15 14 13 17 17 C 1.53000 * 111.00408 * 206.42446 * 15 14 13 18 18 N 1.46505 * 109.47277 * 293.54922 * 17 15 14 19 19 C 1.46491 * 119.99931 * 89.99473 * 18 17 15 20 20 C 1.36934 * 119.99580 * 270.00255 * 18 17 15 21 21 H 1.08004 * 120.00224 * 23.30983 * 20 18 17 22 22 C 1.38808 * 119.99887 * 203.31801 * 20 18 17 23 23 N 1.31623 * 120.00217 * 14.40526 * 22 20 18 24 24 Si 1.86800 * 120.00106 * 194.41056 * 22 20 18 25 25 H 1.48493 * 109.47126 * 59.99715 * 24 22 20 26 26 H 1.48497 * 109.47309 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47243 * 299.99739 * 24 22 20 28 28 C 1.47424 * 125.64792 * 179.97438 * 12 10 9 29 29 H 1.08997 * 109.47220 * 270.03967 * 1 2 3 30 30 H 1.08997 * 109.47469 * 30.04277 * 1 2 3 31 31 H 1.09008 * 109.47114 * 150.03783 * 1 2 3 32 32 H 1.08998 * 109.47093 * 0.16781 * 6 5 4 33 33 H 1.09001 * 109.87990 * 61.59240 * 13 12 10 34 34 H 1.09004 * 109.87768 * 300.43030 * 13 12 10 35 35 H 1.08999 * 110.72124 * 263.82728 * 14 13 12 36 36 H 1.08998 * 110.87614 * 140.62432 * 14 13 12 37 37 H 1.08998 * 109.47108 * 173.54650 * 17 15 14 38 38 H 1.09007 * 109.47048 * 53.54214 * 17 15 14 39 39 H 1.09008 * 109.46623 * 95.19154 * 19 18 17 40 40 H 1.09004 * 109.46862 * 215.18306 * 19 18 17 41 41 H 1.08990 * 109.47919 * 335.19093 * 19 18 17 42 42 H 0.97000 * 120.00147 * 179.97438 * 23 22 20 43 43 H 1.09005 * 110.36747 * 37.07609 * 28 12 10 44 44 H 1.09005 * 110.36975 * 274.76075 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0069 6 6 4.9711 -1.3245 0.0159 7 9 5.0567 -2.1250 1.1599 8 9 5.0701 -2.1288 -1.1246 9 6 2.3992 -1.1696 0.0005 10 6 2.0401 -2.5992 0.0007 11 8 1.8924 -3.1891 -1.0523 12 7 1.8756 -3.2525 1.1680 13 6 2.0222 -2.6641 2.5074 14 6 1.7664 -3.7889 3.5325 15 6 2.0465 -5.0763 2.7129 16 1 3.1140 -5.2941 2.6801 17 6 1.2644 -6.2652 3.2748 18 7 1.7696 -6.5952 4.6098 19 6 1.1808 -5.9628 5.7927 20 6 2.7923 -7.4946 4.7517 21 1 3.4698 -7.6761 3.9303 22 6 2.9583 -8.1733 5.9511 23 7 1.9918 -8.1767 6.8446 24 14 4.5533 -9.0818 6.2973 25 1 5.6860 -8.1220 6.2685 26 1 4.4793 -9.7194 7.6364 27 1 4.7630 -10.1260 5.2623 28 6 1.5176 -4.6752 1.3133 29 1 -0.3633 0.0007 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5133 32 1 5.7834 -0.5976 0.0194 33 1 1.2928 -1.8657 2.6434 34 1 3.0317 -2.2720 2.6315 35 1 0.7326 -3.7686 3.8774 36 1 2.4539 -3.7107 4.3746 37 1 1.3881 -7.1252 2.6166 38 1 0.2074 -6.0066 3.3401 39 1 0.4135 -6.6154 6.2095 40 1 1.9575 -5.7930 6.5384 41 1 0.7332 -5.0099 5.5106 42 1 2.1076 -8.6513 7.6826 43 1 2.0035 -5.2696 0.5394 44 1 0.4359 -4.8010 1.2661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714898873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:31 Heat of formation + Delta-G solvation = -59.572665 kcal Electronic energy + Delta-G solvation = -31150.963166 eV Core-core repulsion = 26549.926548 eV Total energy + Delta-G solvation = -4601.036617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.31907 -48.34601 -46.25483 -41.22583 -39.04710 -37.10185 -35.91153 -34.36759 -33.81842 -32.09456 -30.54335 -29.97050 -28.48313 -27.89597 -27.23770 -25.65666 -23.95318 -22.95479 -22.08189 -21.26611 -20.91528 -19.40482 -19.21869 -18.63596 -18.55164 -18.31033 -18.16733 -17.43668 -17.27380 -16.76475 -16.05803 -15.77272 -15.44088 -15.22101 -15.01654 -14.74643 -14.72442 -14.64000 -14.40972 -14.38525 -14.28717 -13.95158 -13.77281 -13.69709 -13.51027 -12.91874 -12.76210 -12.74478 -12.59398 -12.51291 -12.46415 -12.23982 -11.96146 -11.75885 -11.64506 -11.60342 -11.37467 -11.17615 -11.12380 -10.58701 -9.87062 -8.71079 -7.78975 -5.27336 -0.31103 0.56556 0.96587 1.07650 1.48319 1.49771 1.56150 1.72240 2.53511 2.65365 2.76387 2.85723 3.12550 3.32957 3.39628 3.45491 3.60207 3.62447 3.68411 3.88965 3.93566 4.10706 4.26000 4.26909 4.38555 4.51108 4.55868 4.59181 4.60646 4.80129 4.82151 4.91660 4.97788 4.99705 5.09050 5.16275 5.27419 5.37070 5.50123 5.68398 5.78611 6.20969 6.37419 6.73349 6.78641 7.20479 7.93542 8.35395 9.22863 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002941 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.366857 B = 9517.199329 C =10242.849883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.058 3.942 3 N -0.347 5.347 4 O 0.135 5.865 5 C -0.069 4.069 6 C 0.353 3.647 7 F -0.187 7.187 8 F -0.192 7.192 9 C -0.208 4.208 10 C 0.605 3.395 11 O -0.560 6.560 12 N -0.596 5.596 13 C 0.104 3.896 14 C -0.108 4.108 15 C -0.106 4.106 16 H 0.061 0.939 17 C 0.162 3.838 18 N -0.612 5.612 19 C 0.176 3.824 20 C -0.261 4.261 21 H 0.066 0.934 22 C -0.050 4.050 23 N -0.936 5.936 24 Si 0.961 3.039 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.278 1.278 28 C 0.117 3.883 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.204 0.796 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.058 0.942 39 H -0.001 1.001 40 H 0.010 0.990 41 H 0.043 0.957 42 H 0.247 0.753 43 H 0.066 0.934 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 20.871 -12.413 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 N -0.050 5.050 4 O 0.068 5.932 5 C -0.135 4.135 6 C 0.298 3.702 7 F -0.168 7.168 8 F -0.173 7.173 9 C -0.215 4.215 10 C 0.392 3.608 11 O -0.439 6.439 12 N -0.328 5.328 13 C -0.018 4.018 14 C -0.146 4.146 15 C -0.128 4.128 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.335 5.335 19 C 0.031 3.969 20 C -0.391 4.391 21 H 0.084 0.916 22 C -0.245 4.245 23 N -0.583 5.583 24 Si 0.790 3.210 25 H -0.206 1.206 26 H -0.222 1.222 27 H -0.204 1.204 28 C -0.006 4.006 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.220 0.780 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.018 0.982 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.496 21.790 -12.852 25.303 hybrid contribution 0.744 -1.840 0.439 2.033 sum 1.240 19.950 -12.413 23.529 Atomic orbital electron populations 1.20451 0.82573 1.05260 1.05564 1.25225 1.00078 0.84902 1.00101 1.73606 0.89155 1.23056 1.19168 1.84554 1.21498 1.20279 1.66850 1.25266 0.97438 0.85725 1.05032 1.19986 0.93047 0.85702 0.71445 1.93104 1.96619 1.76340 1.50738 1.93105 1.96542 1.76260 1.51392 1.22103 0.93783 0.95266 1.10333 1.16603 0.77305 0.84251 0.82688 1.90836 1.52801 1.68527 1.31774 1.48462 1.66541 1.11967 1.05781 1.22246 1.02292 0.97087 0.80208 1.22542 1.03034 0.92168 0.96808 1.22867 1.00474 0.96762 0.92686 0.92037 1.20731 0.95456 0.94452 0.85800 1.44025 1.40173 1.47753 1.01569 1.20585 0.95496 0.92873 0.87899 1.19426 1.04628 1.15859 0.99181 0.91603 1.25685 1.00349 0.99933 0.98553 1.70216 1.32109 1.46748 1.09249 0.85437 0.80401 0.78552 0.76636 1.20610 1.22179 1.20391 1.22329 1.00934 0.79783 0.97532 0.87396 0.87986 0.89781 0.77957 0.89351 0.91100 0.89572 0.90582 0.93972 0.92355 0.98229 0.97146 0.93843 0.94379 0.91499 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.49 71.23 0.75 -0.34 16 2 C 0.06 1.14 7.59 45.16 0.34 1.48 16 3 N -0.35 -6.88 12.01 -44.77 -0.54 -7.42 16 4 O 0.13 2.38 11.06 76.96 0.85 3.23 16 5 C -0.07 -1.32 6.98 25.48 0.18 -1.14 16 6 C 0.35 5.50 5.68 71.24 0.40 5.90 16 7 F -0.19 -3.85 16.65 44.97 0.75 -3.11 16 8 F -0.19 -4.25 17.32 44.97 0.78 -3.47 16 9 C -0.21 -4.81 5.42 -18.75 -0.10 -4.91 16 10 C 0.61 17.23 7.66 86.66 0.66 17.89 16 11 O -0.56 -20.10 17.36 -4.05 -0.07 -20.17 16 12 N -0.60 -15.55 3.33 -815.69 -2.71 -18.27 16 13 C 0.10 2.27 6.47 86.73 0.56 2.83 16 14 C -0.11 -2.77 5.03 31.78 0.16 -2.61 16 15 C -0.11 -3.26 3.29 -9.40 -0.03 -3.29 16 16 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 17 C 0.16 5.96 5.16 86.38 0.45 6.41 16 18 N -0.61 -28.80 2.84 -726.94 -2.06 -30.86 16 19 C 0.18 8.09 8.61 127.77 1.10 9.20 16 20 C -0.26 -13.90 9.64 84.03 0.81 -13.09 16 21 H 0.07 3.46 7.87 -2.91 -0.02 3.43 16 22 C -0.05 -2.75 5.07 84.86 0.43 -2.32 16 23 N -0.94 -54.55 10.81 21.65 0.23 -54.32 16 24 Si 0.96 44.66 29.58 68.60 2.03 46.69 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 C 0.12 3.20 6.38 86.85 0.55 3.75 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.20 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.56 7.46 -2.38 -0.02 1.54 16 35 H 0.09 2.05 7.15 -2.39 -0.02 2.03 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 38 H 0.06 1.93 8.04 -2.38 -0.02 1.91 16 39 H 0.00 -0.03 7.33 -2.38 -0.02 -0.05 16 40 H 0.01 0.50 7.40 -2.39 -0.02 0.48 16 41 H 0.04 1.59 6.16 -2.39 -0.01 1.58 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.07 2.01 8.04 -2.38 -0.02 1.99 16 44 H 0.09 2.16 8.04 -2.38 -0.02 2.14 16 Total: -1.00 -71.60 376.59 6.55 -65.05 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.03 Total: 2.89 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.27 Total: 19.76 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -5.08 Total: -110.86 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.78 Total: -16.94 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.53 Total: -6.58 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -71.60 6.55 -65.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714898873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds