Wall clock time and date at job start Wed Apr 1 2020 02:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 N 1.46494 * 109.47025 * 119.99893 * 2 1 3 5 5 C 1.36935 * 120.00076 * 274.99922 * 4 2 1 6 6 H 1.07999 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00286 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00520 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99674 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47286 * 90.00248 * 9 7 5 11 11 H 1.48504 * 109.47338 * 210.00401 * 9 7 5 12 12 H 1.48506 * 109.47439 * 330.00380 * 9 7 5 13 13 C 1.52999 * 109.46983 * 240.00115 * 2 1 3 14 14 H 1.09003 * 109.49522 * 185.06761 * 13 2 1 15 15 C 1.53035 * 109.50090 * 64.99821 * 13 2 1 16 16 C 1.53044 * 109.53911 * 178.68118 * 15 13 2 17 17 C 1.53195 * 109.30971 * 61.36638 * 16 15 13 18 18 N 1.46920 * 108.77442 * 305.36158 * 17 16 15 19 19 C 1.34780 * 120.63240 * 233.62757 * 18 17 16 20 20 O 1.21683 * 119.99749 * 172.87363 * 19 18 17 21 21 C 1.46725 * 119.99908 * 352.87628 * 19 18 17 22 22 O 1.35345 * 126.64318 * 352.57355 * 21 19 18 23 23 C 1.33662 * 107.68484 * 180.02562 * 22 21 19 24 24 N 1.30618 * 109.14911 * 359.97438 * 23 22 21 25 25 C 1.33684 * 109.00055 * 359.73164 * 24 23 22 26 26 C 1.50706 * 126.27499 * 180.26495 * 25 24 23 27 27 F 1.39903 * 109.46819 * 120.19616 * 26 25 24 28 28 F 1.39898 * 109.47153 * 240.19355 * 26 25 24 29 29 C 1.46930 * 118.73804 * 53.61275 * 18 17 16 30 30 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47032 * 299.99999 * 1 2 3 32 32 H 1.09003 * 109.47273 * 60.00156 * 1 2 3 33 33 H 0.97009 * 120.00123 * 95.00207 * 4 2 1 34 34 H 0.96992 * 120.00640 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.46090 * 298.70344 * 15 13 2 36 36 H 1.09005 * 109.45660 * 58.67547 * 15 13 2 37 37 H 1.08997 * 109.49519 * 181.32060 * 16 15 13 38 38 H 1.09003 * 109.49703 * 301.41896 * 16 15 13 39 39 H 1.08996 * 109.58571 * 65.15172 * 17 16 15 40 40 H 1.08998 * 109.58440 * 185.43349 * 17 16 15 41 41 H 1.07999 * 125.42316 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.47135 * 0.19277 * 26 25 24 43 43 H 1.09002 * 109.58469 * 186.59442 * 29 18 17 44 44 H 1.09006 * 109.58424 * 66.17469 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0406 2.4241 7 6 2.6123 -0.6616 3.5091 8 7 2.7375 -0.0052 4.6429 9 14 3.0565 -2.4741 3.4252 10 1 4.4891 -2.6163 3.0608 11 1 2.8174 -3.1042 4.7485 12 1 2.2162 -3.1429 2.3995 13 6 2.0400 -0.7212 -1.2493 14 1 3.1262 -0.8007 -1.2055 15 6 1.6354 0.0686 -2.4960 16 6 2.1733 -0.6347 -3.7444 17 6 1.5612 -2.0358 -3.8398 18 7 1.8220 -2.7523 -2.5840 19 6 2.4131 -3.9635 -2.5944 20 8 2.7414 -4.4893 -1.5473 21 6 2.6609 -4.6480 -3.8684 22 8 2.2310 -4.2589 -5.0914 23 6 2.6704 -5.1552 -5.9803 24 7 3.3524 -6.0783 -5.3567 25 6 3.3739 -5.7957 -4.0503 26 6 4.0572 -6.6008 -2.9750 27 9 5.0126 -5.8055 -2.3332 28 9 3.1083 -7.0337 -2.0426 29 6 1.4264 -2.1233 -1.3165 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.0608 -0.4624 5.4349 35 1 0.5485 0.1270 -2.5521 36 1 2.0507 1.0748 -2.4390 37 1 1.9049 -0.0592 -4.6302 38 1 3.2583 -0.7155 -3.6774 39 1 0.4858 -1.9547 -3.9978 40 1 2.0130 -2.5759 -4.6718 41 1 2.4909 -5.1210 -7.0447 42 1 4.5461 -7.4653 -3.4238 43 1 1.7910 -2.7222 -0.4819 44 1 0.3399 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715318443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:43 Heat of formation + Delta-G solvation = -80.903027 kcal Electronic energy + Delta-G solvation = -31631.009491 eV Core-core repulsion = 27029.047920 eV Total energy + Delta-G solvation = -4601.961571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.05875 -47.06467 -44.10703 -40.33681 -38.15438 -36.12132 -35.43236 -33.12449 -32.05310 -31.62853 -30.24157 -28.36104 -27.50832 -25.75077 -24.63931 -23.89922 -23.06610 -22.42765 -21.24831 -20.42131 -19.01746 -18.30376 -17.85344 -17.76432 -17.43834 -17.24506 -16.95350 -16.35296 -16.02827 -15.22984 -14.99132 -14.79054 -14.49388 -14.46119 -14.05536 -13.92778 -13.63374 -13.39228 -13.20002 -13.11790 -12.94587 -12.72587 -12.64629 -12.22495 -12.15814 -11.80611 -11.70456 -11.44572 -11.28887 -11.03644 -10.89092 -10.76697 -10.57850 -10.51182 -10.37158 -10.10350 -9.91758 -9.74926 -9.51482 -8.90362 -8.73521 -7.23647 -5.72415 -3.08142 0.19948 1.73580 1.78516 2.63319 2.76525 2.93656 3.47777 3.53073 3.57152 3.74799 3.91464 3.98199 4.41757 4.60515 4.66370 4.72007 4.77420 4.79454 4.85279 4.94901 5.02089 5.14824 5.21800 5.38195 5.49798 5.57679 5.57925 5.67487 5.68498 5.73909 5.92821 5.93640 6.10607 6.17296 6.19314 6.31947 6.44240 6.55149 6.76446 6.78755 7.00838 7.08879 7.73805 8.03041 8.46471 9.25060 9.98240 10.16937 11.45683 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.004018 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.774073 B = 6966.930357 C = 8833.845474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.186 3.814 3 H 0.060 0.940 4 N -0.750 5.750 5 C -0.244 4.244 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.274 1.274 13 C -0.109 4.109 14 H 0.078 0.922 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.096 3.904 18 N -0.595 5.595 19 C 0.590 3.410 20 O -0.485 6.485 21 C -0.038 4.038 22 O -0.177 6.177 23 C 0.197 3.803 24 N -0.469 5.469 25 C -0.019 4.019 26 C 0.360 3.640 27 F -0.182 7.182 28 F -0.179 7.179 29 C 0.114 3.886 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.362 0.638 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.263 0.737 42 H 0.131 0.869 43 H 0.097 0.903 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -8.570 -28.045 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.076 3.924 3 H 0.078 0.922 4 N -0.393 5.393 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.582 5.582 9 Si 0.709 3.291 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 C -0.129 4.129 14 H 0.096 0.904 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.027 4.027 18 N -0.328 5.328 19 C 0.374 3.626 20 O -0.360 6.360 21 C -0.095 4.095 22 O -0.063 6.063 23 C -0.029 4.029 24 N -0.197 5.197 25 C -0.144 4.144 26 C 0.305 3.695 27 F -0.163 7.163 28 F -0.160 7.160 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.195 0.805 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.278 0.722 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.892 -9.131 -27.529 29.065 hybrid contribution -0.052 -0.682 0.150 0.700 sum -1.943 -9.813 -27.379 29.149 Atomic orbital electron populations 1.22559 0.99013 1.00879 1.00609 1.20140 0.92011 0.95628 0.84593 0.92212 1.42868 1.79791 1.09479 1.07168 1.19044 1.37087 0.95483 0.85728 0.89196 1.24639 1.01267 0.97414 0.95547 1.69695 1.52633 1.35621 1.00270 0.86641 0.78869 0.86689 0.76893 1.20990 1.21737 1.20036 1.21863 1.01267 0.93882 0.95884 0.90407 1.21612 1.01311 0.99163 0.93120 1.21926 1.01134 0.94879 0.99180 1.22165 1.01332 0.93559 0.85606 1.48063 1.58613 1.16913 1.09192 1.16558 0.79391 0.81693 0.84963 1.91029 1.50012 1.65514 1.29411 1.23358 1.02946 0.98264 0.84959 1.84757 1.59937 1.45619 1.15968 1.28492 0.93047 0.83435 0.97881 1.70160 1.19175 1.26724 1.03602 1.22438 1.02343 0.96166 0.93432 1.19216 0.79283 0.90196 0.80809 1.93085 1.63546 1.76567 1.83124 1.93090 1.65854 1.89610 1.67448 1.22036 0.99989 0.94179 0.84454 0.93394 0.92255 0.93943 0.80496 0.93089 0.91196 0.91076 0.90493 0.91474 0.90734 0.88754 0.72176 0.85160 0.88436 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.77 37.16 0.33 -2.47 16 2 C 0.19 3.41 2.67 -67.93 -0.18 3.23 16 3 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 4 N -0.75 -17.77 4.86 -53.43 -0.26 -18.03 16 5 C -0.24 -6.91 10.41 -15.06 -0.16 -7.06 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 8 N -0.93 -29.85 13.97 55.49 0.78 -29.07 16 9 Si 0.88 23.40 27.73 -169.99 -4.71 18.68 16 10 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 11 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 12 H -0.27 -7.05 6.52 56.52 0.37 -6.68 16 13 C -0.11 -1.63 2.27 -90.50 -0.21 -1.84 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.25 4.89 -26.69 -0.13 -1.38 16 16 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16 17 C 0.10 0.89 6.12 -3.71 -0.02 0.87 16 18 N -0.60 -7.91 2.97 -174.29 -0.52 -8.43 16 19 C 0.59 8.95 7.65 -12.83 -0.10 8.85 16 20 O -0.49 -9.24 13.42 5.20 0.07 -9.17 16 21 C -0.04 -0.47 6.79 -36.84 -0.25 -0.72 16 22 O -0.18 -1.48 7.45 4.43 0.03 -1.45 16 23 C 0.20 1.18 13.21 52.25 0.69 1.87 16 24 N -0.47 -4.46 11.26 -10.89 -0.12 -4.59 16 25 C -0.02 -0.23 6.59 -82.47 -0.54 -0.78 16 26 C 0.36 4.43 5.11 36.01 0.18 4.61 16 27 F -0.18 -2.72 16.48 2.25 0.04 -2.68 16 28 F -0.18 -2.66 15.96 2.25 0.04 -2.63 16 29 C 0.11 1.74 5.19 -3.71 -0.02 1.72 16 30 H 0.05 0.77 6.23 -51.93 -0.32 0.45 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.56 6.60 -51.93 -0.34 0.21 16 33 H 0.36 8.73 4.34 -40.82 -0.18 8.55 16 34 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 35 H 0.07 0.70 6.63 -51.93 -0.34 0.36 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.78 4.26 -52.74 -0.22 0.55 16 41 H 0.26 -0.01 8.06 -52.49 -0.42 -0.43 16 42 H 0.13 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.10 1.83 5.82 -51.93 -0.30 1.53 16 44 H 0.08 1.14 6.06 -51.93 -0.31 0.83 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -36.54 355.51 -5.39 -41.93 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.42 Total: 4.40 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.67 Total: 5.67 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.13 Total: -60.12 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.10 Total: -10.61 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.31 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.71 Total: 18.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.54 -5.39 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715318443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.970 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds