Wall clock time and date at job start Wed Apr 1 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46834 * 2 1 4 4 N 1.46500 * 109.47182 * 240.00063 * 2 1 3 5 5 C 1.36940 * 119.99647 * 84.99669 * 4 2 1 6 6 H 1.07997 * 120.00258 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99817 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47126 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47564 * 119.99833 * 9 7 5 12 12 H 1.48497 * 109.46936 * 240.00038 * 9 7 5 13 13 C 1.52997 * 109.47345 * 119.99824 * 2 1 3 14 14 H 1.08998 * 109.49800 * 59.93666 * 13 2 1 15 15 C 1.53041 * 109.49720 * 299.84498 * 13 2 1 16 16 C 1.53082 * 109.65517 * 178.74831 * 15 13 2 17 17 C 1.53190 * 109.29628 * 61.14985 * 16 15 13 18 18 N 1.46923 * 108.89306 * 305.57905 * 17 16 15 19 19 C 1.34784 * 120.62815 * 233.51509 * 18 17 16 20 20 O 1.21679 * 119.99881 * 173.69422 * 19 18 17 21 21 C 1.46716 * 120.00033 * 353.69316 * 19 18 17 22 22 O 1.35343 * 126.64474 * 351.91073 * 21 19 18 23 23 C 1.33660 * 107.68625 * 179.97438 * 22 21 19 24 24 N 1.30614 * 109.15615 * 0.02562 * 23 22 21 25 25 C 1.33691 * 108.99337 * 359.72723 * 24 23 22 26 26 C 1.50703 * 126.27585 * 180.27411 * 25 24 23 27 27 F 1.39902 * 109.47068 * 30.19107 * 26 25 24 28 28 F 1.39906 * 109.47074 * 150.19176 * 26 25 24 29 29 C 1.46920 * 118.74400 * 53.53839 * 18 17 16 30 30 H 1.08993 * 109.47121 * 299.99596 * 1 2 3 31 31 H 1.08997 * 109.47264 * 60.00260 * 1 2 3 32 32 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99895 * 264.99569 * 4 2 1 34 34 H 0.96998 * 119.99968 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.45780 * 298.69621 * 15 13 2 36 36 H 1.08995 * 109.46561 * 58.66347 * 15 13 2 37 37 H 1.08997 * 109.39034 * 301.27078 * 16 15 13 38 38 H 1.09006 * 109.61644 * 181.16325 * 16 15 13 39 39 H 1.08999 * 109.59035 * 185.71590 * 17 16 15 40 40 H 1.09004 * 109.58330 * 65.43368 * 17 16 15 41 41 H 1.08006 * 125.42535 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46891 * 270.18933 * 26 25 24 43 43 H 1.09007 * 109.58858 * 66.17458 * 29 18 17 44 44 H 1.08993 * 109.59352 * 186.46122 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8925 1.0406 -2.4241 7 6 2.6123 -0.6616 -3.5091 8 7 2.9263 -1.9384 -3.4497 9 14 2.7913 0.2704 -5.1180 10 1 2.3761 1.6826 -4.9208 11 1 4.2084 0.2278 -5.5598 12 1 1.9311 -0.3581 -6.1524 13 6 2.0401 -0.7212 1.2492 14 1 1.6761 -1.7486 1.2503 15 6 1.5335 0.0021 2.4992 16 6 2.0159 -0.7346 3.7514 17 6 3.5476 -0.7380 3.7782 18 7 4.0442 -1.3003 2.5150 19 6 4.9169 -2.3275 2.5167 20 8 5.2326 -2.8594 1.4689 21 6 5.4862 -2.8043 3.7821 22 8 5.3527 -2.2239 4.9975 23 6 6.0215 -2.9720 5.8804 24 7 6.5610 -3.9871 5.2604 25 6 6.2476 -3.9208 3.9624 26 6 6.6626 -4.8991 2.8938 27 9 6.8055 -6.1718 3.4568 28 9 5.6857 -4.9388 1.8931 29 6 3.5720 -0.7215 1.2498 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 3.2504 -2.3955 -4.2415 35 1 1.9181 1.0219 2.5096 36 1 0.4438 0.0252 2.4889 37 1 1.6501 -1.7611 3.7308 38 1 1.6376 -0.2308 4.6409 39 1 3.8972 -1.3470 4.6118 40 1 3.9132 0.2825 3.8926 41 1 6.1028 -2.7694 6.9381 42 1 7.6125 -4.5840 2.4619 43 1 3.9376 0.3012 1.1569 44 1 3.9397 -1.3182 0.4151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715318445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:48 Heat of formation + Delta-G solvation = -84.953768 kcal Electronic energy + Delta-G solvation = -31337.747812 eV Core-core repulsion = 26735.610587 eV Total energy + Delta-G solvation = -4602.137225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.94709 -46.93687 -43.97056 -40.10554 -37.91827 -35.93869 -35.25311 -33.03959 -31.84979 -31.58215 -29.90162 -28.34329 -27.21237 -25.56622 -24.37094 -23.51573 -23.19119 -22.14846 -21.22101 -20.03984 -19.54996 -18.14329 -17.89126 -17.39188 -17.06994 -17.02314 -16.89351 -16.13321 -15.86066 -15.14187 -14.89206 -14.85156 -14.33356 -14.11351 -13.78676 -13.74299 -13.62724 -13.26508 -13.14655 -12.96360 -12.91524 -12.71684 -12.37199 -12.13599 -11.95021 -11.54095 -11.37577 -11.31462 -11.05933 -10.92314 -10.85925 -10.72997 -10.58477 -10.30129 -10.23545 -10.11786 -9.78428 -9.56764 -9.55328 -8.89421 -8.60175 -6.91500 -5.70337 -3.00182 0.34109 1.87687 1.94371 2.80385 2.94408 3.11446 3.46400 3.51379 3.54271 3.77078 4.05317 4.13915 4.57095 4.63043 4.72700 4.79114 4.83906 4.91982 4.99447 5.14142 5.17463 5.29635 5.37457 5.60360 5.61968 5.70017 5.73484 5.76407 5.87561 5.96541 6.06757 6.16322 6.18765 6.37123 6.42235 6.44279 6.62391 6.69225 6.89860 6.95374 7.09239 7.27731 7.74784 7.93226 8.46852 9.58205 10.15476 10.49887 11.51679 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.003453 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.052694 B = 8106.553025 C = 9836.892188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.725 5.725 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.927 5.927 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.104 4.104 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.095 3.905 18 N -0.596 5.596 19 C 0.587 3.413 20 O -0.478 6.478 21 C -0.045 4.045 22 O -0.177 6.177 23 C 0.193 3.807 24 N -0.466 5.466 25 C -0.017 4.017 26 C 0.355 3.645 27 F -0.191 7.191 28 F -0.162 7.162 29 C 0.123 3.877 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.261 0.739 42 H 0.132 0.868 43 H 0.071 0.929 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 1.163 23.429 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.575 5.575 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.124 4.124 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.028 4.028 18 N -0.329 5.329 19 C 0.371 3.629 20 O -0.352 6.352 21 C -0.102 4.102 22 O -0.064 6.064 23 C -0.032 4.032 24 N -0.193 5.193 25 C -0.142 4.142 26 C 0.301 3.699 27 F -0.172 7.172 28 F -0.143 7.143 29 C 0.003 3.997 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.762 0.562 22.980 23.475 hybrid contribution -0.357 0.614 -0.852 1.110 sum 4.405 1.176 22.128 22.593 Atomic orbital electron populations 1.22483 0.99261 1.00851 0.99897 1.20161 0.91890 0.95219 0.85695 0.93466 1.42470 1.78081 1.10798 1.05274 1.19226 1.36796 0.93793 0.87345 0.91248 1.24736 1.02139 0.95912 0.97949 1.69678 1.50495 1.08600 1.28729 0.86185 0.77293 0.78752 0.84337 1.20655 1.21920 1.21976 1.21776 0.94328 1.00762 0.95506 0.90974 1.21650 1.01259 0.99061 0.93373 1.21924 0.94410 1.01716 0.99018 1.22143 0.95129 0.99701 0.85785 1.48083 1.43200 1.32657 1.08915 1.16543 0.80452 0.80887 0.84974 1.91071 1.60268 1.54794 1.29049 1.23329 1.04915 0.96569 0.85380 1.84756 1.57280 1.47722 1.16612 1.28510 0.90620 0.86188 0.97927 1.70219 1.22803 1.22505 1.03802 1.22521 1.00752 0.97246 0.93632 1.19353 0.92179 0.77647 0.80761 1.93024 1.96360 1.41841 1.86012 1.93217 1.64911 1.96025 1.60160 1.21858 0.94315 0.99111 0.84419 0.94302 0.92832 0.93580 0.78118 0.93539 0.91752 0.90988 0.91597 0.90723 0.88851 0.90940 0.72350 0.85102 0.91121 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.15 37.16 0.34 -2.51 16 2 C 0.18 3.39 2.47 -67.93 -0.17 3.23 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.71 4.52 -53.43 -0.24 -17.95 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 9 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C -0.10 -1.62 1.98 -90.50 -0.18 -1.79 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.34 4.85 -26.67 -0.13 -1.47 16 16 C -0.13 -1.28 6.09 -26.59 -0.16 -1.44 16 17 C 0.09 0.96 6.13 -3.71 -0.02 0.94 16 18 N -0.60 -8.36 2.97 -174.30 -0.52 -8.88 16 19 C 0.59 9.15 7.51 -12.83 -0.10 9.05 16 20 O -0.48 -9.21 12.83 5.21 0.07 -9.15 16 21 C -0.05 -0.57 6.76 -36.84 -0.25 -0.82 16 22 O -0.18 -1.62 7.44 4.44 0.03 -1.59 16 23 C 0.19 1.36 13.21 52.24 0.69 2.05 16 24 N -0.47 -5.13 11.21 -10.88 -0.12 -5.25 16 25 C -0.02 -0.22 6.77 -82.46 -0.56 -0.78 16 26 C 0.36 4.67 5.57 36.01 0.20 4.87 16 27 F -0.19 -2.62 17.29 2.25 0.04 -2.59 16 28 F -0.16 -2.72 13.72 2.25 0.03 -2.69 16 29 C 0.12 2.03 5.48 -3.71 -0.02 2.01 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.38 10.29 7.62 -40.82 -0.31 9.98 16 34 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.84 4.22 -52.87 -0.22 0.62 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 0.28 8.06 -52.48 -0.42 -0.14 16 42 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 44 H 0.11 2.32 6.51 -51.93 -0.34 1.98 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -34.39 362.00 -5.89 -40.27 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.73 Total: 6.32 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.60 Total: 6.20 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.16 Total: -59.72 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.10 Total: -10.73 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.07 Total: -5.28 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.39 -5.89 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715318445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.682 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds