Wall clock time and date at job start Wed Apr 1 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46834 * 2 1 4 4 N 1.46500 * 109.47182 * 240.00063 * 2 1 3 5 5 C 1.36940 * 119.99647 * 84.99669 * 4 2 1 6 6 H 1.07997 * 120.00258 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99817 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47126 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47564 * 119.99833 * 9 7 5 12 12 H 1.48497 * 109.46936 * 240.00038 * 9 7 5 13 13 C 1.52997 * 109.47345 * 119.99824 * 2 1 3 14 14 H 1.08998 * 109.49800 * 59.93666 * 13 2 1 15 15 C 1.53041 * 109.49720 * 299.84498 * 13 2 1 16 16 C 1.53082 * 109.65517 * 178.74831 * 15 13 2 17 17 C 1.53190 * 109.29628 * 61.14985 * 16 15 13 18 18 N 1.46923 * 108.89306 * 305.57905 * 17 16 15 19 19 C 1.34784 * 120.62815 * 233.51509 * 18 17 16 20 20 O 1.21679 * 119.99881 * 173.69422 * 19 18 17 21 21 C 1.46716 * 120.00033 * 353.69316 * 19 18 17 22 22 O 1.35343 * 126.64474 * 351.91073 * 21 19 18 23 23 C 1.33660 * 107.68625 * 179.97438 * 22 21 19 24 24 N 1.30614 * 109.15615 * 0.02562 * 23 22 21 25 25 C 1.33691 * 108.99337 * 359.72723 * 24 23 22 26 26 C 1.50703 * 126.27585 * 180.27411 * 25 24 23 27 27 F 1.39902 * 109.47068 * 30.19107 * 26 25 24 28 28 F 1.39906 * 109.47074 * 150.19176 * 26 25 24 29 29 C 1.46920 * 118.74400 * 53.53839 * 18 17 16 30 30 H 1.08993 * 109.47121 * 299.99596 * 1 2 3 31 31 H 1.08997 * 109.47264 * 60.00260 * 1 2 3 32 32 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99895 * 264.99569 * 4 2 1 34 34 H 0.96998 * 119.99968 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.45780 * 298.69621 * 15 13 2 36 36 H 1.08995 * 109.46561 * 58.66347 * 15 13 2 37 37 H 1.08997 * 109.39034 * 301.27078 * 16 15 13 38 38 H 1.09006 * 109.61644 * 181.16325 * 16 15 13 39 39 H 1.08999 * 109.59035 * 185.71590 * 17 16 15 40 40 H 1.09004 * 109.58330 * 65.43368 * 17 16 15 41 41 H 1.08006 * 125.42535 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46891 * 270.18933 * 26 25 24 43 43 H 1.09007 * 109.58858 * 66.17458 * 29 18 17 44 44 H 1.08993 * 109.59352 * 186.46122 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8925 1.0406 -2.4241 7 6 2.6123 -0.6616 -3.5091 8 7 2.9263 -1.9384 -3.4497 9 14 2.7913 0.2704 -5.1180 10 1 2.3761 1.6826 -4.9208 11 1 4.2084 0.2278 -5.5598 12 1 1.9311 -0.3581 -6.1524 13 6 2.0401 -0.7212 1.2492 14 1 1.6761 -1.7486 1.2503 15 6 1.5335 0.0021 2.4992 16 6 2.0159 -0.7346 3.7514 17 6 3.5476 -0.7380 3.7782 18 7 4.0442 -1.3003 2.5150 19 6 4.9169 -2.3275 2.5167 20 8 5.2326 -2.8594 1.4689 21 6 5.4862 -2.8043 3.7821 22 8 5.3527 -2.2239 4.9975 23 6 6.0215 -2.9720 5.8804 24 7 6.5610 -3.9871 5.2604 25 6 6.2476 -3.9208 3.9624 26 6 6.6626 -4.8991 2.8938 27 9 6.8055 -6.1718 3.4568 28 9 5.6857 -4.9388 1.8931 29 6 3.5720 -0.7215 1.2498 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 3.2504 -2.3955 -4.2415 35 1 1.9181 1.0219 2.5096 36 1 0.4438 0.0252 2.4889 37 1 1.6501 -1.7611 3.7308 38 1 1.6376 -0.2308 4.6409 39 1 3.8972 -1.3470 4.6118 40 1 3.9132 0.2825 3.8926 41 1 6.1028 -2.7694 6.9381 42 1 7.6125 -4.5840 2.4619 43 1 3.9376 0.3012 1.1569 44 1 3.9397 -1.3182 0.4151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715318445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:47 Heat of formation + Delta-G solvation = -110.905624 kcal Electronic energy + Delta-G solvation = -31338.873168 eV Core-core repulsion = 26735.610587 eV Total energy + Delta-G solvation = -4603.262582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.05838 -48.07476 -44.76264 -41.25077 -39.17792 -37.17019 -36.33906 -34.65879 -33.21214 -32.53520 -31.37152 -29.92732 -28.25984 -26.67724 -25.92449 -24.66927 -24.34705 -23.09746 -22.33790 -21.28309 -20.79450 -19.17473 -19.01480 -18.86110 -18.24937 -18.14996 -17.88112 -17.23871 -16.80830 -16.68896 -16.28445 -15.76482 -15.61198 -15.38147 -15.22458 -15.08314 -14.85297 -14.41548 -14.35242 -14.21553 -14.08636 -13.96039 -13.80258 -13.44886 -13.02356 -12.91368 -12.80546 -12.55742 -12.45256 -12.39166 -12.16343 -12.09739 -11.93524 -11.73574 -11.62372 -11.47681 -11.27950 -11.13008 -10.93301 -10.47447 -9.72977 -8.96988 -7.89582 -5.18250 -0.55411 1.05646 1.16002 1.46569 1.47634 1.57338 1.72564 1.88788 2.29246 2.58007 2.92248 3.12737 3.23566 3.44047 3.68623 3.73046 3.82914 3.90434 3.97448 4.00120 4.07469 4.17164 4.23950 4.29410 4.44313 4.58514 4.63348 4.73623 4.84829 4.87478 4.90573 5.02155 5.05265 5.09037 5.13963 5.28644 5.36381 5.42463 5.50285 5.57451 5.64678 6.08127 6.27729 6.31330 6.80683 7.36710 8.14734 8.36104 9.34027 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.003453 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.052694 B = 8106.553025 C = 9836.892188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 H 0.052 0.948 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.298 1.298 12 H -0.297 1.297 13 C -0.091 4.091 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.089 3.911 18 N -0.594 5.594 19 C 0.580 3.420 20 O -0.532 6.532 21 C -0.063 4.063 22 O -0.167 6.167 23 C 0.237 3.763 24 N -0.501 5.501 25 C -0.018 4.018 26 C 0.344 3.656 27 F -0.196 7.196 28 F -0.188 7.188 29 C 0.131 3.869 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.368 0.632 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.323 0.677 42 H 0.157 0.843 43 H 0.077 0.923 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 3.702 27.431 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.070 0.930 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.798 3.202 10 H -0.186 1.186 11 H -0.226 1.226 12 H -0.225 1.225 13 C -0.112 4.112 14 H 0.066 0.934 15 C -0.147 4.147 16 C -0.164 4.164 17 C -0.031 4.031 18 N -0.325 5.325 19 C 0.366 3.634 20 O -0.410 6.410 21 C -0.120 4.120 22 O -0.054 6.054 23 C 0.013 3.987 24 N -0.228 5.228 25 C -0.142 4.142 26 C 0.290 3.710 27 F -0.177 7.177 28 F -0.169 7.169 29 C 0.009 3.991 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.199 0.801 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.337 0.663 42 H 0.173 0.827 43 H 0.095 0.905 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.118 3.162 27.058 27.551 hybrid contribution -0.156 -0.147 -1.877 1.889 sum 3.962 3.016 25.181 25.668 Atomic orbital electron populations 1.22332 0.97515 1.00482 1.01086 1.20466 0.92941 0.95121 0.84957 0.93015 1.42714 1.78350 1.10186 1.06524 1.19652 1.34271 0.94137 0.88219 0.90311 1.25542 1.03352 0.96759 1.01475 1.69863 1.52852 1.10449 1.29093 0.85141 0.76527 0.78398 0.80147 1.18577 1.22568 1.22465 1.21620 0.93526 0.99653 0.96352 0.93365 1.21638 1.01915 0.99448 0.91696 1.21927 0.93771 1.01240 0.99449 1.22498 0.95620 1.00948 0.84046 1.48152 1.42671 1.32199 1.09488 1.16909 0.80275 0.80637 0.85552 1.91040 1.62091 1.56565 1.31349 1.22522 1.06466 0.97335 0.85698 1.84731 1.57625 1.47600 1.15477 1.29936 0.86254 0.83407 0.99135 1.70269 1.24882 1.24722 1.02880 1.22430 1.00534 0.96854 0.94380 1.19747 0.92650 0.77713 0.80874 1.93001 1.96361 1.42333 1.86049 1.93164 1.66096 1.96164 1.61503 1.21505 0.94922 0.98254 0.84372 0.89979 0.94673 0.94734 0.80099 0.94410 0.90058 0.89796 0.92832 0.86680 0.87265 0.88688 0.66265 0.82653 0.90503 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.15 71.98 0.66 -4.51 16 2 C 0.17 6.51 2.47 44.99 0.11 6.62 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.89 16 4 N -0.74 -37.55 4.52 -322.94 -1.46 -39.01 16 5 C -0.23 -12.90 9.93 84.03 0.83 -12.06 16 6 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 7 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 8 N -0.97 -62.52 13.06 21.65 0.28 -62.24 16 9 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 C -0.09 -2.84 1.98 -10.71 -0.02 -2.87 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.11 -2.17 4.85 30.64 0.15 -2.02 16 16 C -0.13 -1.95 6.09 30.69 0.19 -1.76 16 17 C 0.09 1.53 6.13 86.36 0.53 2.06 16 18 N -0.59 -16.62 2.97 -823.58 -2.45 -19.07 16 19 C 0.58 18.80 7.51 86.46 0.65 19.45 16 20 O -0.53 -22.39 12.83 -4.28 -0.05 -22.45 16 21 C -0.06 -1.56 6.76 24.04 0.16 -1.40 16 22 O -0.17 -2.48 7.44 -7.04 -0.05 -2.53 16 23 C 0.24 2.28 13.21 130.42 1.72 4.00 16 24 N -0.50 -9.82 11.21 -303.13 -3.40 -13.22 16 25 C -0.02 -0.45 6.77 41.83 0.28 -0.17 16 26 C 0.34 9.46 5.57 71.24 0.40 9.86 16 27 F -0.20 -5.53 17.29 44.97 0.78 -4.75 16 28 F -0.19 -6.85 13.72 44.97 0.62 -6.23 16 29 C 0.13 4.48 5.48 86.37 0.47 4.95 16 30 H 0.08 2.03 6.40 -2.39 -0.02 2.02 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.37 21.04 7.62 -92.71 -0.71 20.34 16 34 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.51 6.36 -2.39 -0.02 1.50 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 0.97 8.14 -2.38 -0.02 0.96 16 39 H 0.11 1.55 4.22 -17.36 -0.07 1.48 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.32 -1.58 8.06 -2.91 -0.02 -1.60 16 42 H 0.16 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.06 2.63 6.51 -2.39 -0.02 2.61 16 Total: -1.00 -82.76 362.00 3.17 -79.59 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.28 Total: 22.45 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 6.60 Total: 17.91 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -7.03 Total: -133.53 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.11 Total: -24.98 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 1.39 Total: -10.98 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -82.76 3.17 -79.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715318445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.317 kcal (2) G-P(sol) polarization free energy of solvation -82.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds