Wall clock time and date at job start Wed Apr 1 2020 02:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 N 1.46502 * 109.47392 * 119.99727 * 2 1 3 5 5 C 1.36939 * 120.00066 * 275.00092 * 4 2 1 6 6 H 1.08000 * 120.00017 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00095 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00304 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00312 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46732 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47372 * 119.99839 * 9 7 5 12 12 H 1.48496 * 109.47254 * 239.99931 * 9 7 5 13 13 C 1.52991 * 109.47382 * 239.99900 * 2 1 3 14 14 H 1.09004 * 109.52465 * 299.91803 * 13 2 1 15 15 C 1.53035 * 109.50003 * 59.99909 * 13 2 1 16 16 C 1.53040 * 109.53090 * 181.31458 * 15 13 2 17 17 C 1.53197 * 109.31039 * 298.64124 * 16 15 13 18 18 N 1.46922 * 108.77424 * 54.63347 * 17 16 15 19 19 C 1.34775 * 120.62780 * 126.37236 * 18 17 16 20 20 O 1.21680 * 120.00018 * 174.55659 * 19 18 17 21 21 C 1.46728 * 120.00386 * 354.55383 * 19 18 17 22 22 O 1.35344 * 126.63593 * 352.76431 * 21 19 18 23 23 C 1.33672 * 107.68085 * 179.87027 * 22 21 19 24 24 N 1.30621 * 109.15096 * 0.40012 * 23 22 21 25 25 C 1.33693 * 108.99626 * 359.75229 * 24 23 22 26 26 C 1.50699 * 126.27104 * 180.02562 * 25 24 23 27 27 F 1.39899 * 109.47125 * 119.97068 * 26 25 24 28 28 F 1.39896 * 109.47026 * 239.96728 * 26 25 24 29 29 C 1.46919 * 118.73950 * 306.38930 * 18 17 16 30 30 H 1.08998 * 109.46630 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46895 * 300.00213 * 1 2 3 32 32 H 1.08994 * 109.46675 * 60.00075 * 1 2 3 33 33 H 0.97001 * 120.00160 * 94.99857 * 4 2 1 34 34 H 0.96993 * 120.00825 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.46295 * 61.29564 * 15 13 2 36 36 H 1.09006 * 109.46027 * 301.32438 * 15 13 2 37 37 H 1.08999 * 109.50063 * 58.59076 * 16 15 13 38 38 H 1.09004 * 109.49907 * 178.69040 * 16 15 13 39 39 H 1.09002 * 109.58200 * 174.42444 * 17 16 15 40 40 H 1.09003 * 109.58334 * 294.84714 * 17 16 15 41 41 H 1.07994 * 125.42418 * 180.14648 * 23 22 21 42 42 H 1.09000 * 109.47567 * 359.97225 * 26 25 24 43 43 H 1.09003 * 109.58920 * 173.39635 * 29 18 17 44 44 H 1.08997 * 109.59277 * 293.82069 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1492 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6115 -0.6618 3.5093 8 7 2.9236 -1.9391 3.4505 9 14 2.7892 0.2699 5.1186 10 1 2.3743 1.6821 4.9213 11 1 1.9281 -0.3587 6.1523 12 1 4.2059 0.2270 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 1.6784 -1.7495 -1.2493 15 6 1.5303 -0.0004 -2.4991 16 6 2.0129 -0.7401 -3.7489 17 6 3.5446 -0.7372 -3.7796 18 7 4.0439 -1.2971 -2.5163 19 6 4.9181 -2.3228 -2.5180 20 8 5.4003 -2.7130 -1.4711 21 6 5.2886 -2.9691 -3.7821 22 8 4.7390 -2.7403 -4.9976 23 6 5.3613 -3.5289 -5.8795 24 7 6.2641 -4.2388 -5.2572 25 6 6.2489 -3.9206 -3.9587 26 6 7.1319 -4.5060 -2.8870 27 9 7.8871 -3.4869 -2.2968 28 9 6.3379 -5.1216 -1.9134 29 6 3.5717 -0.7180 -1.2514 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.2491 -1.6317 1.1527 34 1 3.2470 -2.3963 4.2424 35 1 1.9125 1.0204 -2.5110 36 1 0.4405 0.0201 -2.4875 37 1 1.6515 -1.7682 -3.7255 38 1 1.6303 -0.2396 -4.6385 39 1 3.8945 -1.3463 -4.6130 40 1 3.9057 0.2849 -3.8943 41 1 5.1486 -3.5748 -6.9373 42 1 7.8008 -5.2438 -3.3301 43 1 3.9396 -1.3145 -0.4165 44 1 3.9351 0.3056 -1.1598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715318446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:51 Heat of formation + Delta-G solvation = -83.791642 kcal Electronic energy + Delta-G solvation = -31446.810116 eV Core-core repulsion = 26844.723285 eV Total energy + Delta-G solvation = -4602.086831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92468 -46.92973 -43.98788 -40.10255 -37.92422 -35.98501 -35.25996 -33.02771 -31.83863 -31.53512 -29.88771 -28.34233 -27.30270 -25.55406 -24.35036 -23.57649 -23.19365 -22.20707 -21.20088 -20.03966 -19.53307 -18.16073 -17.69628 -17.41508 -17.30842 -16.94483 -16.80553 -16.20094 -15.83554 -15.12392 -14.88268 -14.84818 -14.32121 -14.18756 -13.78610 -13.74309 -13.59716 -13.25738 -13.12107 -12.89149 -12.81230 -12.74923 -12.37199 -12.10999 -12.00463 -11.62650 -11.37422 -11.30969 -11.06387 -10.91693 -10.84587 -10.72269 -10.58990 -10.29368 -10.27645 -10.11200 -9.77870 -9.61519 -9.54407 -8.88319 -8.59967 -6.90494 -5.69131 -2.99015 0.33563 1.85224 1.90019 2.86794 2.90445 3.05799 3.47952 3.52770 3.55805 3.86650 4.04958 4.11473 4.52328 4.62643 4.74146 4.83015 4.90716 4.92530 4.99732 5.07815 5.17816 5.29809 5.32947 5.61419 5.63034 5.74122 5.74573 5.78151 5.88831 5.97048 6.07785 6.16418 6.19602 6.37998 6.42107 6.44783 6.63112 6.69480 6.89620 6.92257 7.09387 7.28456 7.76059 7.93849 8.48032 9.59377 10.16310 10.50568 11.53004 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.003625 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.772620 B = 7722.443708 C = 9591.482987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.104 4.104 14 H 0.071 0.929 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.089 3.911 18 N -0.596 5.596 19 C 0.587 3.413 20 O -0.478 6.478 21 C -0.035 4.035 22 O -0.176 6.176 23 C 0.192 3.808 24 N -0.470 5.470 25 C -0.022 4.022 26 C 0.360 3.640 27 F -0.183 7.183 28 F -0.177 7.177 29 C 0.124 3.876 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.261 0.739 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -1.075 -24.770 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.366 5.366 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.575 5.575 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.124 4.124 14 H 0.089 0.911 15 C -0.154 4.154 16 C -0.169 4.169 17 C -0.033 4.033 18 N -0.328 5.328 19 C 0.371 3.629 20 O -0.352 6.352 21 C -0.092 4.092 22 O -0.062 6.062 23 C -0.033 4.033 24 N -0.197 5.197 25 C -0.146 4.146 26 C 0.306 3.694 27 F -0.164 7.164 28 F -0.158 7.158 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.277 0.723 42 H 0.147 0.853 43 H 0.129 0.871 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.564 -1.548 -24.289 24.598 hybrid contribution -0.450 0.651 0.964 1.247 sum 3.114 -0.897 -23.325 23.549 Atomic orbital electron populations 1.22481 0.99241 1.00826 0.99912 1.20162 0.91892 0.95258 0.85660 0.93427 1.42463 1.78094 1.10759 1.05296 1.19223 1.36850 0.93792 0.87309 0.91231 1.24733 1.02100 0.95907 0.97967 1.69669 1.50541 1.08583 1.28756 0.86180 0.77319 0.78742 0.84301 1.20646 1.21985 1.21884 1.21785 0.94290 1.00715 0.95590 0.91063 1.21653 1.01239 0.99097 0.93405 1.21900 0.94372 1.01652 0.98983 1.22282 0.95323 0.99689 0.85970 1.48083 1.43104 1.32711 1.08950 1.16579 0.80823 0.80637 0.84866 1.91058 1.52217 1.62988 1.28893 1.23502 0.98548 1.01957 0.85209 1.84745 1.52153 1.52528 1.16806 1.28496 0.89186 0.87702 0.97926 1.70154 1.21041 1.24733 1.03741 1.22439 0.99902 0.98721 0.93577 1.19193 0.84700 0.84809 0.80736 1.93071 1.75769 1.62302 1.85297 1.93110 1.75738 1.82316 1.64624 1.21855 0.94109 0.99353 0.84340 0.93600 0.92815 0.94290 0.78182 0.93527 0.91719 0.90973 0.91572 0.90773 0.88346 0.90919 0.72336 0.85290 0.87080 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 2 C 0.18 3.43 2.47 -67.93 -0.17 3.27 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.91 4.52 -53.43 -0.24 -18.15 16 5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 9 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 13 C -0.10 -1.64 1.97 -90.52 -0.18 -1.82 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.36 4.85 -26.69 -0.13 -1.49 16 16 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 17 C 0.09 0.93 6.33 -3.71 -0.02 0.91 16 18 N -0.60 -8.72 2.97 -174.31 -0.52 -9.24 16 19 C 0.59 9.69 7.66 -12.83 -0.10 9.59 16 20 O -0.48 -9.84 13.42 5.21 0.07 -9.77 16 21 C -0.04 -0.47 6.86 -36.84 -0.25 -0.72 16 22 O -0.18 -1.65 7.33 4.40 0.03 -1.61 16 23 C 0.19 1.32 13.21 52.25 0.69 2.01 16 24 N -0.47 -4.87 11.26 -10.88 -0.12 -4.99 16 25 C -0.02 -0.29 6.59 -82.47 -0.54 -0.83 16 26 C 0.36 4.77 5.11 36.01 0.18 4.95 16 27 F -0.18 -2.84 16.45 2.25 0.04 -2.80 16 28 F -0.18 -2.88 15.98 2.25 0.04 -2.85 16 29 C 0.12 2.11 5.46 -3.73 -0.02 2.09 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.55 6.40 -51.93 -0.33 0.21 16 33 H 0.38 10.37 7.62 -40.82 -0.31 10.06 16 34 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.91 3.82 -54.71 -0.21 0.70 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 0.21 8.06 -52.49 -0.42 -0.21 16 42 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.11 2.39 6.55 -51.93 -0.34 2.05 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -35.19 363.32 -5.86 -41.04 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.72 Total: 6.31 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.61 Total: 6.81 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.16 Total: -60.34 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.10 Total: -11.39 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.07 Total: -5.65 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.19 -5.86 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715318446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.749 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds