Wall clock time and date at job start Wed Apr 1 2020 02:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47034 * 2 1 4 4 N 1.46503 * 109.46774 * 120.00311 * 2 1 3 5 5 C 1.36938 * 120.00092 * 274.99695 * 4 2 1 6 6 H 1.07999 * 119.99672 * 359.97438 * 5 4 2 7 7 C 1.38803 * 120.00028 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00200 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00039 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47302 * 59.99561 * 9 7 5 11 11 H 1.48497 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46904 * 299.99641 * 9 7 5 13 13 C 1.50700 * 109.46979 * 239.99932 * 2 1 3 14 14 C 1.38235 * 119.99867 * 100.00150 * 13 2 1 15 15 C 1.38228 * 120.00205 * 180.02562 * 14 13 2 16 16 C 1.38232 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00380 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47276 * 90.00052 * 17 16 15 19 19 C 1.34784 * 119.99971 * 180.02562 * 18 17 16 20 20 O 1.21547 * 119.99723 * 359.72726 * 19 18 17 21 21 C 1.47843 * 119.99609 * 179.97438 * 19 18 17 22 22 C 1.39557 * 120.55081 * 359.72770 * 21 19 18 23 23 N 1.31656 * 120.62008 * 179.74873 * 22 21 19 24 24 C 1.31931 * 121.91067 * 0.53940 * 23 22 21 25 25 C 1.38543 * 121.04652 * 359.71742 * 24 23 22 26 26 F 1.35094 * 120.37911 * 179.97438 * 25 24 23 27 27 C 1.38619 * 119.24993 * 0.02562 * 25 24 23 28 28 C 1.38238 * 119.99985 * 0.25435 * 16 15 14 29 29 C 1.38231 * 119.99652 * 359.49694 * 28 16 15 30 30 H 1.09004 * 109.47040 * 300.00302 * 1 2 3 31 31 H 1.09002 * 109.47061 * 59.99318 * 1 2 3 32 32 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99787 * 94.99496 * 4 2 1 34 34 H 0.97000 * 120.00175 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.99985 * 359.97438 * 14 13 2 36 36 H 1.08001 * 120.00298 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.47205 * 330.00026 * 17 16 15 38 38 H 1.09005 * 109.47240 * 210.00236 * 17 16 15 39 39 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.68665 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.48033 * 179.75249 * 24 23 22 42 42 H 1.07998 * 120.86719 * 180.02562 * 27 25 24 43 43 H 1.08007 * 120.00114 * 179.72371 * 28 16 15 44 44 H 1.08004 * 120.00339 * 180.23091 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6122 -0.6619 3.5090 8 7 2.9252 -1.9390 3.4499 9 14 2.7900 0.2697 5.1183 10 1 1.4672 0.8056 5.5288 11 1 3.3001 -0.6484 6.1680 12 1 3.7445 1.3928 4.9372 13 6 2.0324 -0.7104 -1.2305 14 6 2.4587 0.0194 -2.3243 15 6 2.9190 -0.6321 -3.4531 16 6 2.9534 -2.0136 -3.4881 17 6 3.4546 -2.7240 -4.7189 18 7 4.8999 -2.9353 -4.6064 19 6 5.5694 -3.5562 -5.5978 20 8 4.9732 -3.9452 -6.5830 21 6 7.0281 -3.7688 -5.4844 22 6 7.7240 -3.3264 -4.3586 23 7 9.0222 -3.5194 -4.2540 24 6 9.7161 -4.1221 -5.2004 25 6 9.1011 -4.5864 -6.3517 26 9 9.8248 -5.2012 -7.3126 27 6 7.7347 -4.4119 -6.5072 28 6 2.5225 -2.7436 -2.3961 29 6 2.0671 -2.0919 -1.2653 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2489 -1.6319 1.1526 34 1 3.2491 -2.3961 4.2417 35 1 2.4315 1.0987 -2.2971 36 1 3.2517 -0.0620 -4.3079 37 1 3.2435 -2.1176 -5.5998 38 1 2.9528 -3.6872 -4.8122 39 1 5.3750 -2.6283 -3.8184 40 1 7.1920 -2.8249 -3.5638 41 1 10.7804 -4.2562 -5.0755 42 1 7.2285 -4.7639 -7.3939 43 1 2.5452 -3.8230 -2.4250 44 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717114321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:59 Heat of formation + Delta-G solvation = -7.976317 kcal Electronic energy + Delta-G solvation = -27682.605143 eV Core-core repulsion = 23514.575136 eV Total energy + Delta-G solvation = -4168.030007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.49851 -41.04802 -39.70757 -39.03426 -36.10391 -34.74350 -33.13833 -32.49292 -31.67327 -30.78223 -30.20973 -28.39468 -26.53917 -24.79036 -24.16383 -23.85703 -22.65445 -21.74607 -21.19302 -19.80736 -18.90578 -17.92204 -17.50616 -17.44848 -16.79661 -16.38955 -16.10508 -15.80637 -15.59209 -15.02004 -14.86460 -14.40351 -14.38186 -14.15964 -13.88271 -13.72651 -13.53610 -13.41282 -13.19576 -12.97134 -12.90428 -12.60745 -12.29565 -12.01564 -11.71775 -11.21327 -10.97025 -10.87436 -10.85338 -10.66593 -10.49223 -10.35620 -10.07778 -10.03275 -9.72041 -9.64217 -9.39890 -9.01598 -8.71573 -8.40574 -7.04435 -5.82653 -3.11641 -0.04567 0.42987 1.36713 1.61564 2.34352 2.76157 3.19419 3.40509 3.43522 3.45269 3.46019 3.73344 3.97380 4.13678 4.16568 4.24733 4.53620 4.54594 4.60275 4.89890 4.97375 5.13648 5.19645 5.23083 5.32408 5.33276 5.49439 5.51721 5.66040 5.72100 5.89541 5.91178 5.96593 6.00943 6.18460 6.25355 6.29633 6.44992 6.56354 6.64729 6.70403 6.90236 7.07364 7.10358 7.15313 7.20644 7.64272 7.74248 8.35633 9.47061 10.02014 10.37254 11.39855 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002108 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.987404 B =13281.988792 C =14963.632958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.051 4.051 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.135 4.135 17 C 0.168 3.832 18 N -0.714 5.714 19 C 0.563 3.437 20 O -0.532 6.532 21 C -0.157 4.157 22 C 0.128 3.872 23 N -0.455 5.455 24 C 0.098 3.902 25 C 0.043 3.957 26 F -0.125 7.125 27 C -0.052 4.052 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.119 0.881 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 -3.178 -20.758 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.046 3.954 18 N -0.366 5.366 19 C 0.348 3.652 20 O -0.410 6.410 21 C -0.162 4.162 22 C -0.031 4.031 23 N -0.162 5.162 24 C -0.060 4.060 25 C 0.021 3.979 26 F -0.103 7.103 27 C -0.079 4.079 28 C -0.116 4.116 29 C -0.124 4.124 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.241 0.759 40 H 0.187 0.813 41 H 0.191 0.809 42 H 0.179 0.821 43 H 0.137 0.863 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.922 -3.071 -20.583 22.267 hybrid contribution 0.109 -0.121 0.472 0.500 sum 8.031 -3.192 -20.110 21.889 Atomic orbital electron populations 1.22426 0.98208 1.01183 1.00189 1.19261 0.92179 0.95024 0.84203 0.92583 1.42508 1.78245 1.10687 1.04893 1.19188 1.36887 0.93982 0.87151 0.91122 1.24735 1.01942 0.96001 0.98098 1.69640 1.50605 1.08666 1.29120 0.86264 0.77808 0.78622 0.83458 1.21234 1.21675 1.21234 1.20557 0.94971 0.94068 0.95611 1.21025 0.99983 0.99864 0.93114 1.20927 0.99540 0.93444 0.98053 1.19610 1.04474 0.93868 0.95594 1.20211 0.78931 1.00375 0.95923 1.46080 1.09606 1.59301 1.21578 1.17889 0.85864 0.78242 0.83169 1.90805 1.69136 1.50270 1.30746 1.20929 0.95228 1.03329 0.96719 1.23186 0.90104 0.94259 0.95557 1.67805 1.08078 1.12466 1.27863 1.23221 1.01618 0.93284 0.87872 1.18679 0.90202 0.99792 0.89227 1.91562 1.77001 1.80223 1.61548 1.21789 0.91985 0.94504 0.99630 1.21028 0.98285 0.99520 0.92794 1.21099 0.99096 0.94442 0.97751 0.92353 0.94311 0.93307 0.78002 0.93381 0.86060 0.86417 0.90463 0.90392 0.75939 0.81303 0.80852 0.82126 0.86253 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.47 37.16 0.35 -2.42 16 2 C 0.20 3.85 3.09 -69.08 -0.21 3.64 16 3 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.25 5.07 -54.55 -0.28 -17.52 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 9 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C -0.05 -0.82 4.95 -104.63 -0.52 -1.34 16 14 C -0.12 -1.65 9.67 -39.59 -0.38 -2.03 16 15 C -0.10 -1.16 9.70 -39.59 -0.38 -1.55 16 16 C -0.13 -1.52 5.25 -104.63 -0.55 -2.07 16 17 C 0.17 1.64 5.80 -5.20 -0.03 1.61 16 18 N -0.71 -6.48 5.50 -62.43 -0.34 -6.82 16 19 C 0.56 5.85 7.78 -12.33 -0.10 5.75 16 20 O -0.53 -7.18 16.42 5.32 0.09 -7.10 16 21 C -0.16 -1.39 5.89 -104.83 -0.62 -2.00 16 22 C 0.13 1.04 10.71 -17.14 -0.18 0.86 16 23 N -0.46 -4.10 10.34 -12.86 -0.13 -4.24 16 24 C 0.10 0.73 11.16 -17.40 -0.19 0.54 16 25 C 0.04 0.33 7.33 -39.33 -0.29 0.05 16 26 F -0.12 -1.01 17.28 2.25 0.04 -0.97 16 27 C -0.05 -0.44 9.70 -38.79 -0.38 -0.82 16 28 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 29 C -0.11 -1.65 9.06 -39.59 -0.36 -2.01 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.38 9.68 6.06 -40.82 -0.25 9.44 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.40 3.09 6.53 -40.82 -0.27 2.83 16 40 H 0.17 1.05 6.42 -52.49 -0.34 0.72 16 41 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.16 1.29 7.73 -52.49 -0.41 0.89 16 43 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 44 H 0.13 2.20 6.92 -52.48 -0.36 1.84 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -31.83 383.80 -8.99 -40.82 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.38 Total: 10.27 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -4.47 Total: -10.45 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.03 Total: -55.18 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.83 -8.99 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717114321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.840 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds