Wall clock time and date at job start Wed Apr 1 2020 02:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47034 * 2 1 4 4 N 1.46503 * 109.46774 * 120.00311 * 2 1 3 5 5 C 1.36938 * 120.00092 * 274.99695 * 4 2 1 6 6 H 1.07999 * 119.99672 * 359.97438 * 5 4 2 7 7 C 1.38803 * 120.00028 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00200 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00039 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47302 * 59.99561 * 9 7 5 11 11 H 1.48497 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46904 * 299.99641 * 9 7 5 13 13 C 1.50700 * 109.46979 * 239.99932 * 2 1 3 14 14 C 1.38235 * 119.99867 * 100.00150 * 13 2 1 15 15 C 1.38228 * 120.00205 * 180.02562 * 14 13 2 16 16 C 1.38232 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00380 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47276 * 90.00052 * 17 16 15 19 19 C 1.34784 * 119.99971 * 180.02562 * 18 17 16 20 20 O 1.21547 * 119.99723 * 359.72726 * 19 18 17 21 21 C 1.47843 * 119.99609 * 179.97438 * 19 18 17 22 22 C 1.39557 * 120.55081 * 359.72770 * 21 19 18 23 23 N 1.31656 * 120.62008 * 179.74873 * 22 21 19 24 24 C 1.31931 * 121.91067 * 0.53940 * 23 22 21 25 25 C 1.38543 * 121.04652 * 359.71742 * 24 23 22 26 26 F 1.35094 * 120.37911 * 179.97438 * 25 24 23 27 27 C 1.38619 * 119.24993 * 0.02562 * 25 24 23 28 28 C 1.38238 * 119.99985 * 0.25435 * 16 15 14 29 29 C 1.38231 * 119.99652 * 359.49694 * 28 16 15 30 30 H 1.09004 * 109.47040 * 300.00302 * 1 2 3 31 31 H 1.09002 * 109.47061 * 59.99318 * 1 2 3 32 32 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99787 * 94.99496 * 4 2 1 34 34 H 0.97000 * 120.00175 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.99985 * 359.97438 * 14 13 2 36 36 H 1.08001 * 120.00298 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.47205 * 330.00026 * 17 16 15 38 38 H 1.09005 * 109.47240 * 210.00236 * 17 16 15 39 39 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.68665 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.48033 * 179.75249 * 24 23 22 42 42 H 1.07998 * 120.86719 * 180.02562 * 27 25 24 43 43 H 1.08007 * 120.00114 * 179.72371 * 28 16 15 44 44 H 1.08004 * 120.00339 * 180.23091 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6122 -0.6619 3.5090 8 7 2.9252 -1.9390 3.4499 9 14 2.7900 0.2697 5.1183 10 1 1.4672 0.8056 5.5288 11 1 3.3001 -0.6484 6.1680 12 1 3.7445 1.3928 4.9372 13 6 2.0324 -0.7104 -1.2305 14 6 2.4587 0.0194 -2.3243 15 6 2.9190 -0.6321 -3.4531 16 6 2.9534 -2.0136 -3.4881 17 6 3.4546 -2.7240 -4.7189 18 7 4.8999 -2.9353 -4.6064 19 6 5.5694 -3.5562 -5.5978 20 8 4.9732 -3.9452 -6.5830 21 6 7.0281 -3.7688 -5.4844 22 6 7.7240 -3.3264 -4.3586 23 7 9.0222 -3.5194 -4.2540 24 6 9.7161 -4.1221 -5.2004 25 6 9.1011 -4.5864 -6.3517 26 9 9.8248 -5.2012 -7.3126 27 6 7.7347 -4.4119 -6.5072 28 6 2.5225 -2.7436 -2.3961 29 6 2.0671 -2.0919 -1.2653 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2489 -1.6319 1.1526 34 1 3.2491 -2.3961 4.2417 35 1 2.4315 1.0987 -2.2971 36 1 3.2517 -0.0620 -4.3079 37 1 3.2435 -2.1176 -5.5998 38 1 2.9528 -3.6872 -4.8122 39 1 5.3750 -2.6283 -3.8184 40 1 7.1920 -2.8249 -3.5638 41 1 10.7804 -4.2562 -5.0755 42 1 7.2285 -4.7639 -7.3939 43 1 2.5452 -3.8230 -2.4250 44 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717114321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:59 Heat of formation + Delta-G solvation = -27.270868 kcal Electronic energy + Delta-G solvation = -27683.441817 eV Core-core repulsion = 23514.575136 eV Total energy + Delta-G solvation = -4168.866682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.11778 -41.75771 -40.66262 -39.94500 -37.44551 -35.89517 -34.19318 -33.75413 -32.54463 -31.84991 -31.40887 -29.99552 -27.49215 -25.99360 -25.33563 -24.78742 -23.76913 -22.94869 -21.96173 -21.09508 -19.64902 -19.35881 -18.58095 -18.05470 -17.61698 -17.10867 -17.02793 -16.85494 -16.67321 -16.33940 -15.94371 -15.77863 -15.16025 -15.03487 -15.00830 -14.84843 -14.56385 -14.42048 -14.33463 -14.22057 -13.77107 -13.54718 -13.50234 -13.40121 -13.03182 -12.80978 -12.69008 -12.41237 -12.17540 -11.99406 -11.71110 -11.58327 -11.49593 -11.16903 -10.97847 -10.75219 -10.33901 -10.11689 -9.76489 -9.53743 -9.00729 -7.92619 -5.20709 -0.68466 -0.20208 0.31538 0.56077 1.48676 1.50919 1.56864 1.60423 1.97309 2.53067 2.57381 2.80132 2.94621 3.14120 3.41718 3.50682 3.54935 3.61346 3.67032 3.89614 3.94536 4.01222 4.06305 4.18207 4.34264 4.37853 4.55924 4.60900 4.62221 4.70746 4.73782 4.78772 4.82231 5.02334 5.08776 5.14111 5.21086 5.24539 5.33209 5.43538 5.52019 5.57838 5.65033 5.86805 6.12181 6.29703 6.32931 6.53863 6.97379 7.36117 8.11003 8.35004 9.30638 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002108 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.987404 B =13281.988792 C =14963.632958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 H 0.055 0.945 4 N -0.734 5.734 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.278 1.278 13 C -0.073 4.073 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.117 4.117 17 C 0.172 3.828 18 N -0.705 5.705 19 C 0.567 3.433 20 O -0.567 6.567 21 C -0.164 4.164 22 C 0.132 3.868 23 N -0.475 5.475 24 C 0.106 3.894 25 C 0.041 3.959 26 F -0.126 7.126 27 C -0.055 4.055 28 C -0.097 4.097 29 C -0.125 4.125 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.413 0.587 40 H 0.186 0.814 41 H 0.200 0.800 42 H 0.161 0.839 43 H 0.133 0.867 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -2.069 -22.330 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.090 3.910 3 H 0.073 0.927 4 N -0.375 5.375 5 C -0.370 4.370 6 H 0.094 0.906 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.799 3.201 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.204 1.204 13 C -0.074 4.074 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.049 3.951 18 N -0.357 5.357 19 C 0.354 3.646 20 O -0.447 6.447 21 C -0.170 4.170 22 C -0.026 4.026 23 N -0.183 5.183 24 C -0.052 4.052 25 C 0.019 3.981 26 F -0.105 7.105 27 C -0.082 4.082 28 C -0.115 4.115 29 C -0.143 4.143 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.250 0.750 40 H 0.203 0.797 41 H 0.217 0.783 42 H 0.178 0.822 43 H 0.151 0.849 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.708 -1.914 -22.173 23.898 hybrid contribution -0.133 -0.465 0.813 0.946 sum 8.575 -2.379 -21.360 23.140 Atomic orbital electron populations 1.22268 0.96970 1.00849 1.00861 1.19424 0.92924 0.94760 0.83873 0.92717 1.42705 1.78480 1.10446 1.05882 1.19584 1.34938 0.94278 0.88236 0.90570 1.25505 1.03013 0.96884 1.01321 1.69799 1.52579 1.10154 1.29449 0.85262 0.77914 0.77349 0.79544 1.20538 1.22403 1.20403 1.20325 0.97289 0.94246 0.95545 1.21194 0.99418 1.00652 0.92765 1.21234 0.97946 0.93581 0.98126 1.19717 1.02844 0.93939 0.95268 1.20170 0.79198 1.00426 0.95271 1.45970 1.09351 1.58763 1.21606 1.18020 0.86313 0.77592 0.82673 1.90792 1.69898 1.51866 1.32115 1.20783 0.94389 1.04446 0.97339 1.23429 0.90044 0.93628 0.95549 1.67879 1.08444 1.13399 1.28547 1.23631 1.02721 0.91809 0.87054 1.18671 0.89936 1.00037 0.89448 1.91560 1.76975 1.80299 1.61669 1.21878 0.92416 0.94316 0.99636 1.21143 0.97750 1.00353 0.92268 1.20969 1.00794 0.94418 0.98135 0.93963 0.91207 0.94139 0.79184 0.94109 0.84513 0.83299 0.89475 0.90378 0.74962 0.79692 0.78297 0.82164 0.84916 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.47 71.98 0.68 -4.48 16 2 C 0.20 7.54 3.09 44.25 0.14 7.67 16 3 H 0.05 2.07 7.94 -2.39 -0.02 2.05 16 4 N -0.73 -35.93 5.07 -326.50 -1.66 -37.59 16 5 C -0.24 -12.93 9.93 84.03 0.83 -12.09 16 6 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 7 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 8 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 9 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C -0.07 -2.33 4.95 -19.87 -0.10 -2.42 16 14 C -0.12 -3.02 9.67 22.27 0.22 -2.81 16 15 C -0.09 -1.78 9.70 22.27 0.22 -1.56 16 16 C -0.12 -2.33 5.25 -19.87 -0.10 -2.43 16 17 C 0.17 2.90 5.80 85.63 0.50 3.39 16 18 N -0.71 -11.16 5.50 -469.70 -2.58 -13.75 16 19 C 0.57 10.89 7.78 86.78 0.68 11.57 16 20 O -0.57 -14.67 16.42 -3.86 -0.06 -14.74 16 21 C -0.16 -2.68 5.89 -20.00 -0.12 -2.79 16 22 C 0.13 1.92 10.71 85.04 0.91 2.83 16 23 N -0.48 -7.70 10.34 -194.60 -2.01 -9.71 16 24 C 0.11 1.37 11.16 84.75 0.95 2.32 16 25 C 0.04 0.58 7.33 22.43 0.16 0.74 16 26 F -0.13 -1.88 17.28 44.97 0.78 -1.11 16 27 C -0.06 -0.88 9.70 22.78 0.22 -0.66 16 28 C -0.10 -2.36 9.70 22.27 0.22 -2.14 16 29 C -0.12 -3.94 9.06 22.27 0.20 -3.73 16 30 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.37 19.65 6.06 -92.71 -0.56 19.09 16 34 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.14 2.92 8.04 -2.91 -0.02 2.90 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.09 1.38 8.09 -2.38 -0.02 1.36 16 38 H 0.08 1.38 8.08 -2.38 -0.02 1.36 16 39 H 0.41 5.26 6.53 -92.71 -0.61 4.65 16 40 H 0.19 1.91 6.42 -2.91 -0.02 1.89 16 41 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.16 2.51 7.73 -2.91 -0.02 2.48 16 43 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.10 3.72 6.92 -2.91 -0.02 3.70 16 Total: -1.00 -69.36 383.80 2.72 -66.64 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.11 Total: 31.25 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 6.06 Total: -10.37 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.97 Total: -119.16 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.06 Total: -14.74 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.36 2.72 -66.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717114321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.368 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds