Wall clock time and date at job start Wed Apr 1 2020 01:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30208 * 126.78852 * 2 1 4 4 O 1.20921 * 111.64681 * 180.29033 * 3 2 1 5 5 C 1.34058 * 111.55043 * 359.70450 * 4 3 2 6 6 Cl 1.73600 * 126.79971 * 180.02562 * 5 4 3 7 7 C 1.35676 * 106.40959 * 0.02562 * 5 4 3 8 8 C 1.50700 * 128.01764 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46769 * 90.02619 * 8 7 5 10 10 C 1.50700 * 109.46769 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00339 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99836 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00226 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.47414 * 325.00262 * 13 12 10 15 15 C 1.53001 * 109.47372 * 85.00029 * 13 12 10 16 16 C 1.52996 * 109.47485 * 205.00306 * 13 12 10 17 17 C 1.52997 * 109.47131 * 64.99753 * 16 13 12 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 13 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 16 20 20 C 1.36937 * 119.99946 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00046 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00249 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00063 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99753 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47492 * 90.00038 * 24 22 20 26 26 H 1.48500 * 109.46982 * 209.99770 * 24 22 20 27 27 H 1.48507 * 109.47317 * 329.99642 * 24 22 20 28 28 H 1.09001 * 109.46917 * 270.19725 * 1 2 3 29 29 H 1.08996 * 109.46924 * 30.19312 * 1 2 3 30 30 H 1.08997 * 109.46891 * 150.19834 * 1 2 3 31 31 H 1.09000 * 109.47305 * 330.02714 * 8 7 5 32 32 H 1.09003 * 109.47247 * 210.02707 * 8 7 5 33 33 H 1.09000 * 109.47129 * 59.99988 * 9 8 7 34 34 H 1.08993 * 109.47323 * 299.99902 * 9 8 7 35 35 H 0.97003 * 119.99985 * 0.02562 * 12 10 9 36 36 H 1.09007 * 109.47124 * 60.00031 * 15 13 12 37 37 H 1.08997 * 109.47849 * 180.02562 * 15 13 12 38 38 H 1.09002 * 109.47074 * 300.00417 * 15 13 12 39 39 H 1.09001 * 109.46993 * 304.99622 * 16 13 12 40 40 H 1.09004 * 109.47298 * 185.00036 * 16 13 12 41 41 H 1.09001 * 109.46832 * 60.00325 * 17 16 13 42 42 H 1.08993 * 109.47194 * 299.99846 * 17 16 13 43 43 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 44 44 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 45 45 H 0.96998 * 120.00192 * 359.97438 * 19 18 17 46 46 H 0.96993 * 119.99944 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0057 5 6 3.6037 -0.6053 -0.0039 6 17 5.1011 -1.4835 -0.0097 7 6 2.3531 -1.1314 0.0033 8 6 1.9581 -2.5857 0.0075 9 6 1.8311 -3.0755 1.4514 10 6 1.4355 -4.5296 1.4556 11 8 1.2716 -5.1166 0.4070 12 7 1.2647 -5.1782 2.6247 13 6 0.8795 -6.5915 2.6289 14 1 0.2106 -6.7884 1.7910 15 6 2.1311 -7.4617 2.4976 16 6 0.1644 -6.9215 3.9406 17 6 -1.1509 -6.1433 4.0141 18 6 -1.8658 -6.4727 5.3262 19 7 -3.1254 -5.7281 5.3963 20 6 -3.9410 -5.8636 6.4878 21 1 -3.6555 -6.5192 7.2973 22 6 -5.1344 -5.1576 6.5546 23 7 -5.9185 -5.2883 7.6035 24 14 -5.6279 -4.0232 5.1550 25 1 -6.4219 -4.7844 4.1573 26 1 -6.4457 -2.9048 5.6892 27 1 -4.4084 -3.4786 4.5057 28 1 -0.3633 0.0035 1.0277 29 1 -0.3633 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5107 31 1 2.7192 -3.1705 -0.5090 32 1 1.0015 -2.7039 -0.5017 33 1 1.0700 -2.4907 1.9679 34 1 2.7876 -2.9574 1.9606 35 1 1.3961 -4.7088 3.4634 36 1 2.8000 -7.2649 3.3355 37 1 1.8445 -8.5133 2.5002 38 1 2.6406 -7.2267 1.5630 39 1 0.7996 -6.6417 4.7810 40 1 -0.0433 -7.9907 3.9823 41 1 -1.7860 -6.4231 3.1736 42 1 -0.9433 -5.0741 3.9725 43 1 -2.0733 -7.5420 5.3682 44 1 -1.2304 -6.1926 6.1664 45 1 -3.3813 -5.1384 4.6698 46 1 -6.7525 -4.7952 7.6499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717696983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:38 Heat of formation + Delta-G solvation = -12.252039 kcal Electronic energy + Delta-G solvation = -26972.071096 eV Core-core repulsion = 22924.883136 eV Total energy + Delta-G solvation = -4047.187961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.18827 -40.89267 -38.33851 -38.07794 -36.95726 -36.50959 -34.28507 -34.15100 -32.85857 -31.73215 -30.82854 -29.73910 -27.37254 -26.48604 -24.41434 -22.90385 -22.56630 -22.42189 -21.69823 -21.27835 -19.61521 -19.03118 -18.81883 -18.04547 -17.26304 -16.81518 -16.57967 -16.22787 -15.85745 -15.73912 -15.19255 -14.98345 -14.83196 -14.51244 -14.33801 -14.13308 -14.02853 -13.69516 -13.65082 -13.62847 -13.48678 -13.45588 -13.26103 -12.98873 -12.86692 -12.82991 -12.47117 -12.24255 -12.05600 -12.00926 -11.85950 -11.83754 -11.72671 -11.50500 -11.07041 -10.96719 -10.82320 -10.29453 -10.00128 -9.29444 -8.03296 -5.36880 -0.01427 0.07846 0.94503 1.37321 1.41803 1.49157 1.71512 2.26626 2.48426 2.52914 2.97508 3.28253 3.44920 3.52079 3.71540 3.73693 3.91669 4.00881 4.13348 4.19467 4.25671 4.27499 4.43461 4.53508 4.59470 4.62787 4.67546 4.69933 4.73757 4.84082 4.89079 4.94381 4.98852 5.01799 5.04269 5.16166 5.21204 5.34183 5.39410 5.45151 5.65559 5.75562 6.21262 6.63603 6.95288 7.08088 7.33363 7.85196 8.03576 9.18318 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.002392 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.471215 B =11701.722886 C =13816.294196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.034 3.966 3 N -0.373 5.373 4 O 0.098 5.902 5 C -0.002 4.002 6 Cl 0.063 6.937 7 C -0.163 4.163 8 C -0.024 4.024 9 C -0.132 4.132 10 C 0.515 3.485 11 O -0.581 6.581 12 N -0.716 5.716 13 C 0.144 3.856 14 H 0.068 0.932 15 C -0.156 4.156 16 C -0.112 4.112 17 C -0.116 4.116 18 C 0.151 3.849 19 N -0.762 5.762 20 C -0.237 4.237 21 H 0.055 0.945 22 C -0.067 4.067 23 N -0.985 5.985 24 Si 0.958 3.042 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.248 1.248 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.021 0.979 44 H 0.027 0.973 45 H 0.365 0.635 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.276 7.026 -18.334 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 N -0.081 5.081 4 O 0.033 5.967 5 C -0.092 4.092 6 Cl 0.091 6.909 7 C -0.168 4.168 8 C -0.062 4.062 9 C -0.172 4.172 10 C 0.303 3.697 11 O -0.461 6.461 12 N -0.368 5.368 13 C 0.040 3.960 14 H 0.086 0.914 15 C -0.214 4.214 16 C -0.151 4.151 17 C -0.154 4.154 18 C 0.025 3.975 19 N -0.408 5.408 20 C -0.368 4.368 21 H 0.073 0.927 22 C -0.259 4.259 23 N -0.635 5.635 24 Si 0.785 3.215 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.172 1.172 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.198 0.802 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 25.054 7.735 -18.855 32.296 hybrid contribution -0.522 0.021 0.045 0.524 sum 24.532 7.755 -18.810 31.871 Atomic orbital electron populations 1.20412 0.83555 1.05128 1.04934 1.23814 1.00258 0.87570 1.00769 1.73975 0.88915 1.23938 1.21271 1.84896 1.22070 1.21353 1.68387 1.24807 0.91769 0.84716 1.07890 1.98470 1.27399 1.68401 1.96593 1.20917 0.89574 0.98396 1.07918 1.19639 1.03931 0.85996 0.96616 1.21642 1.05487 0.91534 0.98514 1.20919 0.75876 0.89587 0.83365 1.90699 1.52655 1.69977 1.32762 1.46110 1.69764 1.11918 1.08997 1.20915 0.96235 0.80614 0.98254 0.91418 1.22098 0.97319 1.00083 1.01889 1.21752 0.94980 1.01499 0.96820 1.21651 0.96628 1.00983 0.96139 1.20856 0.85592 0.94328 0.96707 1.42779 1.22535 1.54209 1.21249 1.19069 0.99582 1.21040 0.97158 0.92684 1.25576 0.97296 1.02526 1.00481 1.69890 1.14064 1.47676 1.31911 0.85361 0.78571 0.78534 0.79029 1.20611 1.22141 1.17236 0.88563 0.89799 0.88231 0.89615 0.89106 0.86973 0.86900 0.75048 0.91148 0.90772 0.93618 0.89588 0.89517 0.92651 0.91406 0.96086 0.95460 0.80155 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.39 71.24 0.74 -0.22 16 2 C 0.03 0.57 7.32 43.55 0.32 0.88 16 3 N -0.37 -7.59 12.07 -49.43 -0.60 -8.19 16 4 O 0.10 1.86 11.20 71.46 0.80 2.66 16 5 C 0.00 -0.03 8.12 67.23 0.55 0.52 16 6 Cl 0.06 0.75 29.23 -2.72 -0.08 0.67 16 7 C -0.16 -2.42 5.58 -19.71 -0.11 -2.53 16 8 C -0.02 -0.32 4.90 29.85 0.15 -0.17 16 9 C -0.13 -1.53 5.68 29.85 0.17 -1.36 16 10 C 0.51 9.04 7.79 87.66 0.68 9.73 16 11 O -0.58 -14.82 15.65 -3.03 -0.05 -14.87 16 12 N -0.72 -10.71 4.53 -442.54 -2.00 -12.72 16 13 C 0.14 2.49 2.57 44.99 0.12 2.60 16 14 H 0.07 1.49 7.58 -2.38 -0.02 1.47 16 15 C -0.16 -2.32 9.48 71.98 0.68 -1.64 16 16 C -0.11 -1.97 4.75 30.59 0.15 -1.82 16 17 C -0.12 -2.90 5.22 30.60 0.16 -2.74 16 18 C 0.15 5.32 6.26 86.38 0.54 5.86 16 19 N -0.76 -34.99 5.41 -343.44 -1.86 -36.85 16 20 C -0.24 -13.56 10.47 84.03 0.88 -12.68 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 23 N -0.98 -63.18 13.97 21.65 0.30 -62.88 16 24 Si 0.96 44.95 27.74 68.60 1.90 46.85 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.91 7.65 -2.39 -0.02 0.90 16 31 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.09 1.29 7.60 -2.39 -0.02 1.28 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.41 4.33 8.60 -92.71 -0.80 3.53 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.37 15.90 5.53 -92.71 -0.51 15.39 16 46 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -74.97 401.45 3.54 -71.43 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.37 Total: 20.97 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.49 Total: -7.08 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.16 Total: -120.64 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.75 Total: -12.20 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -74.97 3.54 -71.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717696983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.180 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds