Wall clock time and date at job start Wed Apr 1 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47461 * 2 1 4 4 C 1.35625 * 125.68003 * 261.45703 * 3 2 1 5 5 C 1.35514 * 108.85713 * 180.27010 * 4 3 2 6 6 Cl 1.73594 * 126.07966 * 179.74633 * 5 4 3 7 7 C 1.39892 * 107.84837 * 359.76313 * 5 4 3 8 8 C 1.37642 * 125.67581 * 81.32790 * 3 2 1 9 9 C 1.46670 * 126.21873 * 359.97438 * 8 3 2 10 10 O 1.21684 * 120.00474 * 2.56187 * 9 8 3 11 11 N 1.34782 * 119.99579 * 182.56084 * 9 8 3 12 12 C 1.46501 * 119.99892 * 354.02062 * 11 9 8 13 13 C 1.46497 * 119.99972 * 174.02488 * 11 9 8 14 14 C 1.52997 * 109.47429 * 89.99931 * 13 11 9 15 15 H 1.09005 * 109.46813 * 304.99583 * 14 13 11 16 16 O 1.42898 * 109.47258 * 64.99950 * 14 13 11 17 17 C 1.53007 * 109.47008 * 185.00130 * 14 13 11 18 18 N 1.46496 * 109.46901 * 179.97438 * 17 14 13 19 19 C 1.46502 * 120.00073 * 89.99816 * 18 17 14 20 20 C 1.36936 * 120.00043 * 269.99926 * 18 17 14 21 21 H 1.07996 * 120.00094 * 27.78872 * 20 18 17 22 22 C 1.38815 * 120.00002 * 207.78925 * 20 18 17 23 23 N 1.31621 * 119.99772 * 9.35125 * 22 20 18 24 24 Si 1.86797 * 120.00073 * 189.35494 * 22 20 18 25 25 H 1.48497 * 109.47484 * 89.99917 * 24 22 20 26 26 H 1.48500 * 109.47002 * 209.99994 * 24 22 20 27 27 H 1.48504 * 109.47050 * 329.99592 * 24 22 20 28 28 H 1.09001 * 109.46961 * 65.03901 * 1 2 3 29 29 H 1.08997 * 109.47600 * 185.04443 * 1 2 3 30 30 H 1.09002 * 109.46722 * 305.04327 * 1 2 3 31 31 H 1.09003 * 109.46709 * 240.00110 * 2 1 3 32 32 H 1.08999 * 109.46594 * 120.00344 * 2 1 3 33 33 H 1.08001 * 125.57412 * 0.03168 * 4 3 2 34 34 H 1.08003 * 126.45261 * 179.97438 * 7 5 4 35 35 H 1.09006 * 109.47201 * 292.90159 * 12 11 9 36 36 H 1.09000 * 109.47581 * 52.90272 * 12 11 9 37 37 H 1.09000 * 109.47082 * 172.90684 * 12 11 9 38 38 H 1.09004 * 109.47065 * 329.99340 * 13 11 9 39 39 H 1.08999 * 109.46752 * 210.00126 * 13 11 9 40 40 H 0.96697 * 113.99916 * 59.99740 * 16 14 13 41 41 H 1.08997 * 109.46789 * 299.99627 * 17 14 13 42 42 H 1.09001 * 109.47060 * 60.00008 * 17 14 13 43 43 H 1.08996 * 109.46854 * 86.21595 * 19 18 17 44 44 H 1.08993 * 109.47563 * 206.21849 * 19 18 17 45 45 H 1.09002 * 109.46992 * 326.22436 * 19 18 17 46 46 H 0.97000 * 120.00050 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4364 2.0724 -1.0894 5 6 2.8196 3.3127 -0.7007 6 17 3.4359 4.5634 -1.7349 7 6 2.6306 3.4061 0.6822 8 6 2.1271 2.1941 1.1053 9 6 1.7765 1.8347 2.4834 10 8 1.3876 0.7103 2.7388 11 7 1.8851 2.7498 3.4669 12 6 2.4758 4.0607 3.1858 13 6 1.4126 2.4337 4.8171 14 6 2.5526 1.8079 5.6229 15 1 2.9451 0.9439 5.0865 16 8 3.5934 2.7704 5.8025 17 6 2.0272 1.3639 6.9897 18 7 3.1187 0.7641 7.7611 19 6 3.9510 1.6031 8.6269 20 6 3.3610 -0.5808 7.6728 21 1 3.1029 -1.1180 6.7723 22 6 3.9384 -1.2535 8.7410 23 7 4.0841 -0.6465 9.8998 24 14 4.5086 -3.0202 8.5339 25 1 5.9232 -3.0341 8.0822 26 1 4.3966 -3.7320 9.8324 27 1 3.6593 -3.6991 7.5224 28 1 -0.3633 0.4337 -0.9317 29 1 -0.3634 -1.0236 0.0904 30 1 -0.3633 0.5901 0.8414 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4635 1.6946 -2.1009 34 1 2.8401 4.2655 1.3020 35 1 3.5343 3.9403 2.9552 36 1 1.9676 4.5132 2.3342 37 1 2.3650 4.7039 4.0587 38 1 0.5820 1.7304 4.7559 39 1 1.0792 3.3477 5.3086 40 1 3.3149 3.5675 6.2737 41 1 1.6347 2.2277 7.5261 42 1 1.2333 0.6296 6.8527 43 1 3.4777 1.6985 9.6041 44 1 4.9331 1.1446 8.7420 45 1 4.0613 2.5906 8.1787 46 1 4.4879 -1.1164 10.6461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725723586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:47 Heat of formation + Delta-G solvation = 6.457812 kcal Electronic energy + Delta-G solvation = -28537.265918 eV Core-core repulsion = 24490.889278 eV Total energy + Delta-G solvation = -4046.376641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83594 -39.45629 -37.37104 -36.63415 -35.67368 -34.61460 -33.98924 -31.46958 -30.65576 -29.47313 -28.90816 -27.17567 -25.91256 -25.47210 -23.78870 -22.64362 -21.49197 -20.88200 -20.57659 -19.33555 -17.43587 -16.85843 -16.39356 -16.18370 -15.92842 -15.38584 -15.01341 -14.88071 -14.68543 -14.58052 -14.42211 -13.83225 -13.60780 -13.56108 -13.29429 -13.07968 -12.98150 -12.89759 -12.85752 -12.36464 -11.88362 -11.68114 -11.63018 -11.47320 -11.32054 -11.10840 -10.94346 -10.86134 -10.65355 -10.50139 -10.33776 -10.07712 -9.90517 -9.87497 -9.68787 -8.92112 -8.66371 -8.47081 -8.32084 -6.56567 -5.68788 -3.17255 1.23670 1.88500 2.23181 2.51911 3.15631 3.25025 3.42107 3.47816 3.49827 4.33587 4.45850 4.53585 4.61701 4.77447 4.89999 4.92593 4.98056 5.05796 5.16599 5.26518 5.30150 5.34393 5.42617 5.48143 5.56070 5.62543 5.70936 5.82414 5.86129 5.91555 5.96473 6.06079 6.20160 6.47628 6.57534 6.65818 6.80204 6.81323 6.93517 7.29784 7.46915 7.75304 7.87371 8.10527 8.20886 8.49685 9.30570 9.92047 10.43213 11.37025 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002683 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.398576 B =10432.358833 C =11309.374811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.399 5.399 4 C 0.029 3.971 5 C -0.125 4.125 6 Cl -0.054 7.054 7 C -0.155 4.155 8 C -0.025 4.025 9 C 0.583 3.417 10 O -0.539 6.539 11 N -0.591 5.591 12 C 0.068 3.932 13 C 0.088 3.912 14 C 0.070 3.930 15 H 0.098 0.902 16 O -0.548 6.548 17 C 0.126 3.874 18 N -0.590 5.590 19 C 0.168 3.832 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.908 5.908 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.357 0.643 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.014 0.986 44 H 0.049 0.951 45 H -0.001 1.001 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 11.255 -22.203 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.072 5.072 4 C -0.108 4.108 5 C -0.158 4.158 6 Cl -0.026 7.026 7 C -0.181 4.181 8 C -0.140 4.140 9 C 0.372 3.628 10 O -0.418 6.418 11 N -0.323 5.323 12 C -0.074 4.074 13 C -0.035 4.035 14 C 0.007 3.993 15 H 0.116 0.884 16 O -0.352 6.352 17 C -0.003 4.003 18 N -0.312 5.312 19 C 0.023 3.977 20 C -0.384 4.384 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.202 0.798 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.018 0.982 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.577 9.850 -22.227 25.186 hybrid contribution 0.180 -0.419 0.028 0.457 sum -6.397 9.431 -22.200 24.954 Atomic orbital electron populations 1.22062 0.93663 1.03548 1.02634 1.22132 0.96260 0.78667 1.05304 1.44046 1.45923 1.11796 1.05476 1.21701 1.04671 0.91913 0.92502 1.19969 1.12180 0.91515 0.92134 1.98319 1.86409 1.51365 1.66471 1.22375 1.04001 0.98052 0.93639 1.20047 1.13273 0.91865 0.88769 1.16870 0.78275 0.84613 0.83031 1.90828 1.47857 1.19589 1.83540 1.47348 1.60740 1.14846 1.09319 1.22479 0.98760 0.83985 1.02222 1.22443 0.98816 1.01426 0.80838 1.23287 0.87315 0.91114 0.97564 0.88449 1.86656 1.38066 1.30961 1.79470 1.21283 0.91532 0.96919 0.90542 1.43645 1.32264 1.04720 1.50585 1.20721 0.95425 0.89882 0.91629 1.19165 1.37523 0.84114 0.97567 0.91845 1.25106 1.01610 0.97844 0.94867 1.70047 1.47710 1.36503 1.00990 0.86259 0.78780 0.84700 0.76844 1.21470 1.21705 1.20420 0.92473 0.90399 0.91312 0.89047 0.87223 0.80798 0.80586 0.91265 0.90561 0.90486 0.89140 0.90272 0.79782 0.94443 0.92615 0.96786 0.93185 0.98231 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.12 37.16 0.38 -1.05 16 2 C 0.10 0.92 6.09 -4.04 -0.02 0.89 16 3 N -0.40 -4.37 2.76 -112.83 -0.31 -4.68 16 4 C 0.03 0.27 11.34 -16.85 -0.19 0.08 16 5 C -0.13 -1.28 6.66 -39.94 -0.27 -1.55 16 6 Cl -0.05 -0.50 29.30 -51.86 -1.52 -2.02 16 7 C -0.16 -1.67 8.86 -39.09 -0.35 -2.02 16 8 C -0.03 -0.32 6.83 -81.98 -0.56 -0.88 16 9 C 0.58 8.49 7.63 -12.85 -0.10 8.39 16 10 O -0.54 -9.32 13.87 5.20 0.07 -9.25 16 11 N -0.59 -7.53 2.84 -183.13 -0.52 -8.05 16 12 C 0.07 0.63 8.24 59.85 0.49 1.12 16 13 C 0.09 1.17 5.01 -4.04 -0.02 1.15 16 14 C 0.07 1.23 3.48 -26.73 -0.09 1.13 16 15 H 0.10 2.11 8.14 -51.93 -0.42 1.69 16 16 O -0.55 -9.32 11.56 -35.23 -0.41 -9.72 16 17 C 0.13 2.54 5.38 -4.04 -0.02 2.51 16 18 N -0.59 -15.13 2.83 -181.12 -0.51 -15.64 16 19 C 0.17 4.22 8.77 59.85 0.52 4.74 16 20 C -0.25 -7.24 9.61 -15.06 -0.14 -7.38 16 21 H 0.06 1.81 7.85 -52.49 -0.41 1.40 16 22 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16 23 N -0.91 -27.15 10.87 55.49 0.60 -26.55 16 24 Si 0.90 22.63 29.56 -169.99 -5.03 17.61 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.77 7.61 -51.93 -0.40 0.38 16 31 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 32 H 0.11 1.29 6.77 -51.93 -0.35 0.94 16 33 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.18 1.56 4.06 -52.48 -0.21 1.34 16 35 H 0.07 0.68 7.42 -51.93 -0.39 0.30 16 36 H 0.08 0.58 5.38 -51.93 -0.28 0.30 16 37 H 0.08 0.58 7.76 -51.93 -0.40 0.17 16 38 H 0.09 1.29 7.51 -51.93 -0.39 0.90 16 39 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 40 H 0.36 4.67 8.81 45.56 0.40 5.07 16 41 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 42 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 43 H 0.01 0.37 7.75 -51.93 -0.40 -0.03 16 44 H 0.05 1.39 6.98 -51.93 -0.36 1.02 16 45 H 0.00 -0.02 6.82 -51.93 -0.35 -0.37 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -34.61 385.63 -8.31 -42.92 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.04 Total: 2.41 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.46 Total: 7.18 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.74 Total: -54.93 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.34 Total: -18.97 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.61 -8.31 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725723586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.376 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds