Wall clock time and date at job start Wed Apr 1 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47461 * 2 1 4 4 C 1.35625 * 125.68003 * 261.45703 * 3 2 1 5 5 C 1.35514 * 108.85713 * 180.27010 * 4 3 2 6 6 Cl 1.73594 * 126.07966 * 179.74633 * 5 4 3 7 7 C 1.39892 * 107.84837 * 359.76313 * 5 4 3 8 8 C 1.37642 * 125.67581 * 81.32790 * 3 2 1 9 9 C 1.46670 * 126.21873 * 359.97438 * 8 3 2 10 10 O 1.21684 * 120.00474 * 2.56187 * 9 8 3 11 11 N 1.34782 * 119.99579 * 182.56084 * 9 8 3 12 12 C 1.46501 * 119.99892 * 354.02062 * 11 9 8 13 13 C 1.46497 * 119.99972 * 174.02488 * 11 9 8 14 14 C 1.52997 * 109.47429 * 89.99931 * 13 11 9 15 15 H 1.09005 * 109.46813 * 304.99583 * 14 13 11 16 16 O 1.42898 * 109.47258 * 64.99950 * 14 13 11 17 17 C 1.53007 * 109.47008 * 185.00130 * 14 13 11 18 18 N 1.46496 * 109.46901 * 179.97438 * 17 14 13 19 19 C 1.46502 * 120.00073 * 89.99816 * 18 17 14 20 20 C 1.36936 * 120.00043 * 269.99926 * 18 17 14 21 21 H 1.07996 * 120.00094 * 27.78872 * 20 18 17 22 22 C 1.38815 * 120.00002 * 207.78925 * 20 18 17 23 23 N 1.31621 * 119.99772 * 9.35125 * 22 20 18 24 24 Si 1.86797 * 120.00073 * 189.35494 * 22 20 18 25 25 H 1.48497 * 109.47484 * 89.99917 * 24 22 20 26 26 H 1.48500 * 109.47002 * 209.99994 * 24 22 20 27 27 H 1.48504 * 109.47050 * 329.99592 * 24 22 20 28 28 H 1.09001 * 109.46961 * 65.03901 * 1 2 3 29 29 H 1.08997 * 109.47600 * 185.04443 * 1 2 3 30 30 H 1.09002 * 109.46722 * 305.04327 * 1 2 3 31 31 H 1.09003 * 109.46709 * 240.00110 * 2 1 3 32 32 H 1.08999 * 109.46594 * 120.00344 * 2 1 3 33 33 H 1.08001 * 125.57412 * 0.03168 * 4 3 2 34 34 H 1.08003 * 126.45261 * 179.97438 * 7 5 4 35 35 H 1.09006 * 109.47201 * 292.90159 * 12 11 9 36 36 H 1.09000 * 109.47581 * 52.90272 * 12 11 9 37 37 H 1.09000 * 109.47082 * 172.90684 * 12 11 9 38 38 H 1.09004 * 109.47065 * 329.99340 * 13 11 9 39 39 H 1.08999 * 109.46752 * 210.00126 * 13 11 9 40 40 H 0.96697 * 113.99916 * 59.99740 * 16 14 13 41 41 H 1.08997 * 109.46789 * 299.99627 * 17 14 13 42 42 H 1.09001 * 109.47060 * 60.00008 * 17 14 13 43 43 H 1.08996 * 109.46854 * 86.21595 * 19 18 17 44 44 H 1.08993 * 109.47563 * 206.21849 * 19 18 17 45 45 H 1.09002 * 109.46992 * 326.22436 * 19 18 17 46 46 H 0.97000 * 120.00050 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4364 2.0724 -1.0894 5 6 2.8196 3.3127 -0.7007 6 17 3.4359 4.5634 -1.7349 7 6 2.6306 3.4061 0.6822 8 6 2.1271 2.1941 1.1053 9 6 1.7765 1.8347 2.4834 10 8 1.3876 0.7103 2.7388 11 7 1.8851 2.7498 3.4669 12 6 2.4758 4.0607 3.1858 13 6 1.4126 2.4337 4.8171 14 6 2.5526 1.8079 5.6229 15 1 2.9451 0.9439 5.0865 16 8 3.5934 2.7704 5.8025 17 6 2.0272 1.3639 6.9897 18 7 3.1187 0.7641 7.7611 19 6 3.9510 1.6031 8.6269 20 6 3.3610 -0.5808 7.6728 21 1 3.1029 -1.1180 6.7723 22 6 3.9384 -1.2535 8.7410 23 7 4.0841 -0.6465 9.8998 24 14 4.5086 -3.0202 8.5339 25 1 5.9232 -3.0341 8.0822 26 1 4.3966 -3.7320 9.8324 27 1 3.6593 -3.6991 7.5224 28 1 -0.3633 0.4337 -0.9317 29 1 -0.3634 -1.0236 0.0904 30 1 -0.3633 0.5901 0.8414 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4635 1.6946 -2.1009 34 1 2.8401 4.2655 1.3020 35 1 3.5343 3.9403 2.9552 36 1 1.9676 4.5132 2.3342 37 1 2.3650 4.7039 4.0587 38 1 0.5820 1.7304 4.7559 39 1 1.0792 3.3477 5.3086 40 1 3.3149 3.5675 6.2737 41 1 1.6347 2.2277 7.5261 42 1 1.2333 0.6296 6.8527 43 1 3.4777 1.6985 9.6041 44 1 4.9331 1.1446 8.7420 45 1 4.0613 2.5906 8.1787 46 1 4.4879 -1.1164 10.6461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725723586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:47 Heat of formation + Delta-G solvation = -16.860827 kcal Electronic energy + Delta-G solvation = -28538.277090 eV Core-core repulsion = 24490.889278 eV Total energy + Delta-G solvation = -4047.387813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.66298 -40.52034 -38.80388 -37.39263 -36.94059 -36.22241 -34.82473 -33.33346 -31.94447 -30.30749 -30.04881 -28.17309 -27.83626 -26.99583 -24.54600 -24.12294 -22.56019 -22.28802 -21.75973 -20.23382 -18.82728 -18.27971 -17.63827 -17.36126 -16.93608 -16.75608 -16.42208 -16.16832 -15.96631 -15.56848 -15.33169 -15.27219 -14.87315 -14.74576 -14.53389 -14.27264 -14.07255 -13.93580 -13.71770 -13.61688 -13.08554 -13.04767 -12.86638 -12.77010 -12.53329 -12.39374 -12.23580 -12.22130 -12.13146 -12.06939 -11.99324 -11.81748 -11.71987 -11.28928 -10.96637 -10.62688 -9.74827 -9.66983 -9.22702 -8.61312 -7.86353 -5.37342 0.35148 1.13066 1.40717 1.42181 1.45368 1.51211 1.66334 2.21668 2.32597 2.47493 3.26552 3.46282 3.56440 3.74066 3.76230 3.95432 4.05929 4.07906 4.16985 4.19578 4.30590 4.35091 4.47480 4.48845 4.54538 4.62842 4.69769 4.76266 4.83321 4.90834 4.95789 4.98258 5.02486 5.13314 5.23150 5.39881 5.40931 5.54773 5.58641 5.70062 5.74502 6.05897 6.31758 6.34401 7.03897 7.08137 7.15235 7.87503 8.30611 9.16288 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002683 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.398576 B =10432.358833 C =11309.374811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 N -0.405 5.405 4 C 0.044 3.956 5 C -0.142 4.142 6 Cl -0.045 7.045 7 C -0.145 4.145 8 C -0.060 4.060 9 C 0.573 3.427 10 O -0.581 6.581 11 N -0.591 5.591 12 C 0.063 3.937 13 C 0.099 3.901 14 C 0.093 3.907 15 H 0.046 0.954 16 O -0.560 6.560 17 C 0.123 3.877 18 N -0.611 5.611 19 C 0.184 3.816 20 C -0.264 4.264 21 H 0.053 0.947 22 C -0.049 4.049 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.287 1.287 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.207 0.793 34 H 0.193 0.807 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.379 0.621 41 H 0.070 0.930 42 H 0.043 0.957 43 H -0.006 1.006 44 H 0.014 0.986 45 H 0.038 0.962 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 12.921 -24.303 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 N -0.079 5.079 4 C -0.093 4.093 5 C -0.175 4.175 6 Cl -0.016 7.016 7 C -0.170 4.170 8 C -0.173 4.173 9 C 0.363 3.637 10 O -0.463 6.463 11 N -0.321 5.321 12 C -0.078 4.078 13 C -0.025 4.025 14 C 0.030 3.970 15 H 0.065 0.935 16 O -0.366 6.366 17 C -0.004 4.004 18 N -0.333 5.333 19 C 0.039 3.961 20 C -0.395 4.395 21 H 0.071 0.929 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.792 3.208 25 H -0.214 1.214 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.224 0.776 34 H 0.210 0.790 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.227 0.773 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.012 0.988 44 H 0.033 0.967 45 H 0.057 0.943 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.901 11.577 -24.346 27.828 hybrid contribution 0.286 -0.839 0.585 1.062 sum -6.615 10.738 -23.761 26.901 Atomic orbital electron populations 1.21990 0.93261 1.03715 1.02134 1.22192 0.96594 0.78284 1.05420 1.44228 1.45945 1.12149 1.05531 1.22272 1.02340 0.91436 0.93277 1.20095 1.12949 0.92260 0.92168 1.98323 1.86313 1.50972 1.66034 1.22621 1.02439 0.97746 0.94231 1.19921 1.15819 0.93172 0.88361 1.17319 0.77760 0.84309 0.84282 1.90799 1.49872 1.21322 1.84325 1.47433 1.60380 1.15796 1.08539 1.22699 0.98342 0.82536 1.04245 1.22241 0.96334 1.02758 0.81146 1.22686 0.88189 0.90315 0.95792 0.93530 1.86612 1.38263 1.31778 1.79967 1.21494 0.89923 0.97468 0.91500 1.43879 1.33947 1.04131 1.51367 1.20475 0.93263 0.91182 0.91182 1.19364 1.37216 0.85771 0.97134 0.92897 1.25817 1.02250 1.01604 0.94717 1.70183 1.48679 1.37786 1.01468 0.85315 0.78158 0.80432 0.76855 1.21353 1.21330 1.19761 0.90704 0.89475 0.94324 0.85633 0.90318 0.77583 0.79025 0.91857 0.88700 0.87976 0.90480 0.85964 0.77309 0.91217 0.93809 0.98780 0.96732 0.94327 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.12 71.98 0.73 -1.92 16 2 C 0.10 1.76 6.09 86.38 0.53 2.29 16 3 N -0.41 -8.47 2.76 -510.89 -1.41 -9.88 16 4 C 0.04 0.73 11.34 83.48 0.95 1.68 16 5 C -0.14 -2.60 6.66 22.04 0.15 -2.46 16 6 Cl -0.04 -0.73 29.30 -2.72 -0.08 -0.81 16 7 C -0.14 -2.87 8.86 22.59 0.20 -2.67 16 8 C -0.06 -1.46 6.83 40.35 0.28 -1.19 16 9 C 0.57 16.99 7.63 86.44 0.66 17.65 16 10 O -0.58 -21.29 13.87 -4.30 -0.06 -21.35 16 11 N -0.59 -14.52 2.84 -851.52 -2.42 -16.94 16 12 C 0.06 1.00 8.24 127.77 1.05 2.05 16 13 C 0.10 2.51 5.01 86.38 0.43 2.94 16 14 C 0.09 3.23 3.48 30.60 0.11 3.33 16 15 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 16 O -0.56 -18.04 11.56 -148.98 -1.72 -19.76 16 17 C 0.12 4.91 5.38 86.38 0.46 5.37 16 18 N -0.61 -31.64 2.83 -726.95 -2.06 -33.70 16 19 C 0.18 9.25 8.77 127.77 1.12 10.37 16 20 C -0.26 -15.46 9.61 84.03 0.81 -14.65 16 21 H 0.05 3.14 7.85 -2.91 -0.02 3.12 16 22 C -0.05 -2.85 5.10 84.86 0.43 -2.42 16 23 N -0.93 -57.12 10.87 21.65 0.24 -56.89 16 24 Si 0.96 47.49 29.56 68.60 2.03 49.51 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 0.90 7.61 -2.39 -0.02 0.88 16 31 H 0.13 1.39 8.11 -2.39 -0.02 1.37 16 32 H 0.08 1.97 6.77 -2.39 -0.02 1.96 16 33 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.19 2.95 4.06 -2.91 -0.01 2.94 16 35 H 0.06 1.11 7.42 -2.38 -0.02 1.10 16 36 H 0.10 1.18 5.38 -2.39 -0.01 1.16 16 37 H 0.10 1.12 7.76 -2.39 -0.02 1.10 16 38 H 0.08 2.21 7.51 -2.38 -0.02 2.19 16 39 H 0.12 2.08 7.87 -2.39 -0.02 2.06 16 40 H 0.38 8.55 8.81 -74.06 -0.65 7.90 16 41 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 42 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 43 H -0.01 -0.33 7.75 -2.39 -0.02 -0.35 16 44 H 0.01 0.79 6.98 -2.39 -0.02 0.77 16 45 H 0.04 1.60 6.82 -2.39 -0.02 1.58 16 46 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -78.85 385.63 2.77 -76.09 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.35 Total: 13.34 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 7.90 Total: 20.38 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -5.65 Total: -117.41 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.78 Total: -41.10 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -78.85 2.77 -76.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725723586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.226 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds