Wall clock time and date at job start Wed Apr 1 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00159 * 2 1 4 4 C 1.52994 * 109.47254 * 269.99652 * 3 2 1 5 5 O 1.42905 * 109.46852 * 64.99962 * 4 3 2 6 6 C 1.42906 * 113.99999 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47046 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46788 * 65.00551 * 7 6 5 9 9 C 1.36940 * 119.99960 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99671 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00162 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00210 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00039 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47347 * 89.99767 * 13 11 9 15 15 H 1.48497 * 109.47443 * 210.00215 * 13 11 9 16 16 H 1.48507 * 109.46807 * 330.00323 * 13 11 9 17 17 C 1.34782 * 120.00040 * 179.97438 * 2 1 3 18 18 O 1.21547 * 120.00218 * 184.82631 * 17 2 1 19 19 C 1.47837 * 119.99934 * 4.83124 * 17 2 1 20 20 C 1.40023 * 120.55752 * 321.75683 * 19 17 2 21 21 C 1.38355 * 118.28903 * 179.70594 * 20 19 17 22 22 C 1.38354 * 119.30578 * 0.27151 * 21 20 19 23 23 C 1.50697 * 119.46574 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.46890 * 210.00141 * 23 22 21 25 25 F 1.39906 * 109.46587 * 329.99496 * 23 22 21 26 26 N 1.31934 * 121.07357 * 359.97438 * 22 21 20 27 27 C 1.31695 * 121.88218 * 0.02562 * 26 22 21 28 28 H 1.09000 * 109.47188 * 264.84837 * 1 2 3 29 29 H 1.09003 * 109.46658 * 24.84962 * 1 2 3 30 30 H 1.08999 * 109.47221 * 144.84535 * 1 2 3 31 31 H 1.08996 * 109.46597 * 30.00309 * 3 2 1 32 32 H 1.09004 * 109.46850 * 150.00151 * 3 2 1 33 33 H 1.08997 * 109.47295 * 184.99796 * 4 3 2 34 34 H 1.09000 * 109.47400 * 305.00451 * 4 3 2 35 35 H 1.08992 * 109.47143 * 300.00363 * 6 5 4 36 36 H 1.09000 * 109.46390 * 60.00705 * 6 5 4 37 37 H 1.08991 * 109.47071 * 184.99986 * 7 6 5 38 38 H 1.08994 * 109.47256 * 305.00839 * 7 6 5 39 39 H 0.96995 * 119.99948 * 359.97438 * 8 7 6 40 40 H 0.96998 * 120.00497 * 180.02562 * 12 11 9 41 41 H 1.08002 * 120.85983 * 359.97425 * 20 19 17 42 42 H 1.08004 * 120.35236 * 180.25107 * 21 20 19 43 43 H 1.08997 * 109.47455 * 89.99931 * 23 22 21 44 44 H 1.08000 * 119.71374 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 8 1.2061 1.9935 -2.0814 6 6 1.3326 2.4175 -3.4402 7 6 -0.0565 2.6905 -4.0206 8 7 -0.6660 3.8217 -3.3169 9 6 -1.9187 4.2508 -3.6662 10 1 -2.4571 3.7555 -4.4607 11 6 -2.4960 5.3228 -2.9998 12 7 -3.6998 5.7356 -3.3358 13 14 -1.5646 6.1798 -1.6260 14 1 -0.7555 7.2885 -2.1930 15 1 -2.5302 6.7263 -0.6390 16 1 -0.6674 5.2059 -0.9538 17 6 2.1389 -1.1672 0.0005 18 8 3.3511 -1.1691 0.0891 19 6 1.4036 -2.4453 -0.1067 20 6 0.1765 -2.6175 0.5453 21 6 -0.4744 -3.8307 0.4079 22 6 0.1050 -4.8273 -0.3571 23 6 -0.6011 -6.1498 -0.5095 24 9 0.3447 -7.1661 -0.6827 25 9 -1.3589 -6.4087 0.6376 26 7 1.2652 -4.6383 -0.9561 27 6 1.9230 -3.5018 -0.8556 28 1 -0.3633 -0.0923 1.0235 29 1 -0.3633 0.9326 -0.4319 30 1 -0.3633 -0.8402 -0.5917 31 1 1.6084 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.0733 2.6064 -1.4437 34 1 2.9643 0.9131 -1.9815 35 1 1.9299 3.3282 -3.4826 36 1 1.8212 1.6351 -4.0209 37 1 0.0329 2.9277 -5.0807 38 1 -0.6819 1.8064 -3.8975 39 1 -0.1826 4.2662 -2.6030 40 1 -4.1031 6.4849 -2.8704 41 1 -0.2531 -1.8223 1.1365 42 1 -1.4247 -3.9981 0.8931 43 1 -1.2581 -6.1130 -1.3784 44 1 2.8705 -3.3852 -1.3605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725802659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:39 Heat of formation + Delta-G solvation = -111.862827 kcal Electronic energy + Delta-G solvation = -29543.616131 eV Core-core repulsion = 24940.312042 eV Total energy + Delta-G solvation = -4603.304089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.44869 -47.44936 -41.26259 -39.62939 -37.95391 -35.98579 -34.68716 -33.51014 -32.64515 -31.65450 -30.24548 -28.19113 -27.85104 -26.61699 -24.55763 -23.56482 -23.32519 -22.66524 -21.19675 -20.13465 -18.33717 -18.03221 -17.96630 -17.69892 -17.63638 -16.93007 -16.55097 -16.18846 -16.04273 -15.52899 -15.25021 -14.88613 -14.53034 -14.31327 -14.24326 -14.12267 -13.93999 -13.76278 -13.53163 -13.45499 -13.10612 -13.00262 -12.97121 -12.69884 -12.34169 -12.09512 -11.96684 -11.80658 -11.66957 -11.21011 -10.89727 -10.62562 -10.56343 -10.41191 -10.14841 -10.00483 -9.73377 -9.62467 -9.47241 -8.98548 -8.92096 -7.24636 -5.78735 -3.13707 0.01451 0.62360 2.24533 2.58717 2.85414 3.15394 3.35572 3.39472 3.43182 3.59458 3.75167 3.77696 4.00326 4.21088 4.29197 4.38908 4.57722 4.58255 4.64726 4.90006 4.91533 5.02391 5.09043 5.18342 5.20657 5.26397 5.32576 5.40628 5.43724 5.49079 5.51419 5.62394 5.69636 5.77547 5.88086 5.95031 6.17443 6.45587 6.58731 6.96453 7.19629 7.35260 7.72275 7.97244 8.40184 9.20073 9.92334 10.13172 11.39718 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.002393 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.062715 B =11699.298301 C =12624.859673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.043 3.957 5 O -0.375 6.375 6 C 0.055 3.945 7 C 0.160 3.840 8 N -0.751 5.751 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.935 5.935 13 Si 0.884 3.116 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.274 1.274 17 C 0.562 3.438 18 O -0.532 6.532 19 C -0.162 4.162 20 C -0.046 4.046 21 C -0.145 4.145 22 C 0.065 3.935 23 C 0.327 3.673 24 F -0.185 7.185 25 F -0.193 7.193 26 N -0.457 5.457 27 C 0.159 3.841 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.766 -20.755 8.699 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C -0.004 4.004 4 C -0.035 4.035 5 O -0.294 6.294 6 C -0.022 4.022 7 C 0.032 3.968 8 N -0.397 5.397 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.583 5.583 13 Si 0.715 3.285 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.200 1.200 17 C 0.349 3.651 18 O -0.410 6.410 19 C -0.167 4.167 20 C -0.072 4.072 21 C -0.165 4.165 22 C -0.073 4.073 23 C 0.272 3.728 24 F -0.166 7.166 25 F -0.174 7.174 26 N -0.165 5.165 27 C 0.000 4.000 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.197 0.803 40 H 0.069 0.931 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.151 0.849 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 10.358 -21.458 8.245 25.214 hybrid contribution 0.359 1.419 1.365 2.001 sum 10.717 -20.039 9.610 24.674 Atomic orbital electron populations 1.22281 0.78465 1.05602 1.01057 1.47659 1.07746 1.05408 1.71866 1.21644 0.98543 0.84327 0.95917 1.22887 0.87572 0.99357 0.93704 1.87979 1.27969 1.87574 1.25897 1.22851 0.99360 0.97710 0.82276 1.20661 0.89959 0.91415 0.94716 1.42631 1.18387 1.36500 1.42209 1.19064 0.91149 1.11458 1.15628 0.89309 1.24662 0.96389 0.98696 0.99460 1.69702 1.15016 1.29362 1.44267 0.86538 0.79293 0.79802 0.82916 1.21221 1.21808 1.20034 1.18070 0.86913 0.83269 0.76878 1.90803 1.13253 1.87142 1.49806 1.21097 0.96798 0.96616 1.02148 1.22220 0.92167 0.97414 0.95425 1.21847 1.02269 0.93149 0.99263 1.21889 0.93342 0.96044 0.96057 1.20111 0.83835 0.81603 0.87235 1.93047 1.66518 1.61456 1.95586 1.93030 1.76164 1.94478 1.53747 1.67387 1.06419 1.23327 1.19374 1.22910 0.98199 0.85772 0.93103 0.92308 0.88344 0.90928 0.88946 0.88166 0.92332 0.93259 0.93374 0.93469 0.94144 0.94910 0.80347 0.93082 0.82489 0.82941 0.84904 0.80973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.65 59.85 0.52 1.15 16 2 N -0.60 -6.34 2.84 -182.70 -0.52 -6.86 16 3 C 0.12 1.25 5.83 -4.04 -0.02 1.23 16 4 C 0.04 0.51 6.28 37.15 0.23 0.74 16 5 O -0.37 -5.61 9.21 -35.23 -0.32 -5.94 16 6 C 0.05 0.82 6.07 37.16 0.23 1.04 16 7 C 0.16 3.00 6.65 -4.04 -0.03 2.98 16 8 N -0.75 -17.63 5.35 -59.91 -0.32 -17.95 16 9 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 10 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 12 N -0.94 -29.12 13.97 55.49 0.78 -28.34 16 13 Si 0.88 21.79 27.74 -169.99 -4.71 17.07 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.27 -6.34 6.52 56.52 0.37 -5.97 16 17 C 0.56 6.50 7.38 -12.33 -0.09 6.41 16 18 O -0.53 -7.62 16.46 5.32 0.09 -7.53 16 19 C -0.16 -1.60 5.27 -104.82 -0.55 -2.15 16 20 C -0.05 -0.36 7.69 -38.87 -0.30 -0.65 16 21 C -0.15 -1.04 9.42 -39.50 -0.37 -1.41 16 22 C 0.07 0.57 6.58 -82.51 -0.54 0.03 16 23 C 0.33 2.33 5.72 36.00 0.21 2.54 16 24 F -0.19 -1.80 17.05 2.25 0.04 -1.76 16 25 F -0.19 -1.47 16.45 2.25 0.04 -1.44 16 26 N -0.46 -4.80 9.94 -9.14 -0.09 -4.89 16 27 C 0.16 1.62 10.80 -17.13 -0.19 1.43 16 28 H 0.06 0.40 6.87 -51.93 -0.36 0.04 16 29 H 0.10 1.14 7.22 -51.93 -0.38 0.77 16 30 H 0.07 0.62 5.84 -51.93 -0.30 0.32 16 31 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.10 1.01 7.36 -51.93 -0.38 0.63 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.36 8.42 5.53 -40.82 -0.23 8.19 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.16 0.89 5.30 -52.49 -0.28 0.62 16 42 H 0.15 0.73 7.59 -52.48 -0.40 0.33 16 43 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.17 1.60 8.05 -52.49 -0.42 1.17 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -35.23 377.22 -6.22 -41.45 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.71 Total: 4.14 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.16 Total: 6.37 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.15 Total: -58.05 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.24 Total: -13.47 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.23 -6.22 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725802659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.414 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds