Wall clock time and date at job start Wed Apr 1 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30004 * 127.34100 * 2 1 4 4 O 1.20658 * 112.30680 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15705 * 359.75315 * 4 3 2 6 6 C 1.50695 * 126.83635 * 180.30463 * 5 4 3 7 7 F 1.39899 * 109.47229 * 120.10119 * 6 5 4 8 8 F 1.39892 * 109.47342 * 240.10634 * 6 5 4 9 9 C 1.37365 * 106.33783 * 0.38982 * 5 4 3 10 10 C 1.47398 * 128.56366 * 179.90558 * 9 5 4 11 11 O 1.21602 * 120.00290 * 269.67787 * 10 9 5 12 12 N 1.34777 * 119.99481 * 89.68269 * 10 9 5 13 13 C 1.47024 * 125.65097 * 0.02571 * 12 10 9 14 14 C 1.54327 * 107.27261 * 180.79378 * 13 12 10 15 15 C 1.55157 * 102.94254 * 22.19044 * 14 13 12 16 16 H 1.09004 * 111.00509 * 82.56945 * 15 14 13 17 17 C 1.52999 * 111.00567 * 206.39067 * 15 14 13 18 18 H 1.08996 * 109.47280 * 60.82129 * 17 15 14 19 19 C 1.52997 * 109.47169 * 180.82525 * 17 15 14 20 20 N 1.46506 * 109.46712 * 300.81902 * 17 15 14 21 21 C 1.36935 * 120.00018 * 154.99806 * 20 17 15 22 22 H 1.08009 * 119.99849 * 0.02562 * 21 20 17 23 23 C 1.38815 * 120.00213 * 180.02562 * 21 20 17 24 24 N 1.31616 * 119.99717 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99958 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46706 * 89.99938 * 25 23 21 27 27 H 1.48499 * 109.46868 * 209.99927 * 25 23 21 28 28 H 1.48502 * 109.46994 * 330.00235 * 25 23 21 29 29 C 1.47429 * 125.64636 * 179.71439 * 12 10 9 30 30 H 1.09001 * 109.47465 * 270.00331 * 1 2 3 31 31 H 1.09008 * 109.47038 * 29.99868 * 1 2 3 32 32 H 1.09005 * 109.47719 * 149.99651 * 1 2 3 33 33 H 1.09003 * 109.47006 * 0.10855 * 6 5 4 34 34 H 1.09003 * 109.87905 * 300.20988 * 13 12 10 35 35 H 1.09000 * 109.88443 * 61.21802 * 13 12 10 36 36 H 1.08997 * 110.72038 * 140.55191 * 14 13 12 37 37 H 1.08996 * 110.71772 * 263.65348 * 14 13 12 38 38 H 1.09005 * 109.47196 * 174.74382 * 19 17 15 39 39 H 1.08999 * 109.47256 * 294.74232 * 19 17 15 40 40 H 1.08999 * 109.47212 * 54.74288 * 19 17 15 41 41 H 0.96998 * 120.00372 * 335.00815 * 20 17 15 42 42 H 0.97005 * 119.99673 * 179.97438 * 24 23 21 43 43 H 1.09005 * 110.36448 * 274.97564 * 29 12 10 44 44 H 1.08992 * 110.36787 * 37.29798 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0005 5 6 3.6494 -0.6009 0.0044 6 6 4.9710 -1.3249 0.0116 7 9 5.0579 -2.1255 1.1556 8 9 5.0686 -2.1290 -1.1289 9 6 2.3991 -1.1697 -0.0006 10 6 2.0399 -2.5993 -0.0002 11 8 1.8909 -3.1891 -1.0531 12 7 1.8767 -3.2527 1.1673 13 6 2.0249 -2.6644 2.5065 14 6 1.7647 -3.7880 3.5319 15 6 2.0405 -5.0766 2.7129 16 1 3.1074 -5.2978 2.6799 17 6 1.2546 -6.2627 3.2754 18 1 0.1870 -6.0500 3.2205 19 6 1.5676 -7.5165 2.4563 20 7 1.6374 -6.4838 4.6721 21 6 0.7680 -7.1021 5.5307 22 1 -0.1998 -7.4271 5.1780 23 6 1.1305 -7.3112 6.8542 24 7 0.2950 -7.9059 7.6792 25 14 2.8039 -6.7484 7.4644 26 1 2.7033 -5.3562 7.9713 27 1 3.2577 -7.6426 8.5598 28 1 3.7808 -6.7990 6.3471 29 6 1.5135 -4.6741 1.3129 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3635 -0.8900 -0.5139 33 1 5.7834 -0.5981 0.0144 34 1 3.0358 -2.2759 2.6309 35 1 1.3002 -1.8615 2.6411 36 1 2.4543 -3.7104 4.3724 37 1 0.7317 -3.7620 3.8787 38 1 1.0818 -8.3791 2.9124 39 1 1.1983 -7.3874 1.4389 40 1 2.6456 -7.6762 2.4340 41 1 2.5065 -6.1922 4.9889 42 1 0.5484 -8.0523 8.6041 43 1 0.4314 -4.7959 1.2654 44 1 1.9975 -5.2704 0.5395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733526926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:21 Heat of formation + Delta-G solvation = -74.334841 kcal Electronic energy + Delta-G solvation = -31150.105438 eV Core-core repulsion = 26548.428685 eV Total energy + Delta-G solvation = -4601.676753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.30576 -48.32887 -46.26474 -41.29531 -39.22973 -36.95859 -35.91189 -34.43355 -34.08102 -32.22630 -31.17215 -30.00916 -29.24753 -28.12025 -26.49494 -25.47803 -23.92792 -22.81413 -22.08324 -21.34596 -20.91685 -19.63736 -19.37643 -19.16771 -18.56542 -18.35570 -18.17094 -17.55212 -17.25793 -16.60148 -16.09947 -15.83518 -15.31553 -15.20975 -15.00652 -14.74147 -14.72743 -14.64300 -14.40965 -14.38000 -14.19038 -14.02074 -13.94734 -13.77469 -13.53686 -13.49779 -12.98657 -12.83130 -12.74474 -12.47672 -12.36180 -12.06167 -11.92461 -11.78079 -11.69272 -11.61621 -11.38601 -11.18198 -11.12349 -10.94173 -9.89210 -9.27572 -7.96743 -5.29360 -0.30703 0.55901 0.96229 1.07999 1.41715 1.44900 1.52198 1.69483 2.53373 2.65240 2.75225 2.86175 3.10691 3.34383 3.35263 3.39499 3.55039 3.61116 3.62524 3.79517 3.92033 4.04533 4.20211 4.25475 4.30566 4.43835 4.49414 4.55247 4.57714 4.63125 4.68719 4.82299 4.92402 4.96641 4.99555 5.05207 5.12187 5.26540 5.35818 5.58482 5.83816 6.17805 6.27103 6.71990 6.79282 7.14166 7.90057 8.09504 9.25066 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.002979 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.281323 B = 9396.220195 C = 9555.201057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.056 3.944 3 N -0.348 5.348 4 O 0.135 5.865 5 C -0.069 4.069 6 C 0.354 3.646 7 F -0.185 7.185 8 F -0.191 7.191 9 C -0.208 4.208 10 C 0.607 3.393 11 O -0.557 6.557 12 N -0.597 5.597 13 C 0.102 3.898 14 C -0.115 4.115 15 C -0.096 4.096 16 H 0.088 0.912 17 C 0.187 3.813 18 H 0.050 0.950 19 C -0.162 4.162 20 N -0.746 5.746 21 C -0.220 4.220 22 H 0.056 0.944 23 C -0.065 4.065 24 N -0.987 5.987 25 Si 0.951 3.049 26 H -0.275 1.275 27 H -0.303 1.303 28 H -0.251 1.251 29 C 0.119 3.881 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.203 0.797 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.365 0.635 42 H 0.255 0.745 43 H 0.081 0.919 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 20.385 -17.106 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 N -0.050 5.050 4 O 0.069 5.931 5 C -0.134 4.134 6 C 0.300 3.700 7 F -0.166 7.166 8 F -0.172 7.172 9 C -0.215 4.215 10 C 0.393 3.607 11 O -0.436 6.436 12 N -0.328 5.328 13 C -0.020 4.020 14 C -0.153 4.153 15 C -0.115 4.115 16 H 0.106 0.894 17 C 0.079 3.921 18 H 0.069 0.931 19 C -0.222 4.222 20 N -0.389 5.389 21 C -0.351 4.351 22 H 0.074 0.926 23 C -0.256 4.256 24 N -0.639 5.639 25 Si 0.779 3.221 26 H -0.201 1.201 27 H -0.231 1.231 28 H -0.176 1.176 29 C -0.003 4.003 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.220 0.780 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.199 0.801 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.688 21.296 -17.662 28.999 hybrid contribution 0.431 -1.198 0.812 1.510 sum 9.119 20.098 -16.850 27.767 Atomic orbital electron populations 1.20441 0.82819 1.05240 1.05440 1.25199 0.99999 0.85076 1.00229 1.73608 0.89205 1.23080 1.19127 1.84554 1.21418 1.20411 1.66743 1.25319 0.97484 0.85671 1.04929 1.19960 0.92836 0.85709 0.71503 1.93095 1.96588 1.76275 1.50643 1.93104 1.96532 1.76214 1.51365 1.22097 0.93747 0.95249 1.10437 1.16563 0.77273 0.84178 0.82658 1.90842 1.52597 1.68454 1.31714 1.48420 1.66668 1.11991 1.05744 1.22262 1.02656 0.96974 0.80097 1.22551 1.03515 0.92180 0.97015 1.22527 1.00717 0.94892 0.93409 0.89369 1.20253 0.96952 0.92180 0.82727 0.93144 1.22355 1.01232 0.99008 0.99598 1.42689 1.17201 1.71878 1.07126 1.18985 0.96978 1.28552 0.90622 0.92571 1.25443 1.01726 1.01864 0.96548 1.69888 1.38162 1.50492 1.05309 0.85469 0.80924 0.77759 0.77984 1.20086 1.23084 1.17582 1.22300 1.00809 0.79971 0.97228 0.87626 0.88050 0.89787 0.78011 0.90208 0.89877 0.89571 0.90414 0.94784 0.91323 0.92985 0.80137 0.93572 0.90102 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.49 71.23 0.75 -0.36 16 2 C 0.06 1.06 7.59 45.16 0.34 1.40 16 3 N -0.35 -6.62 12.01 -44.79 -0.54 -7.16 16 4 O 0.14 2.21 11.06 76.99 0.85 3.06 16 5 C -0.07 -1.17 6.98 25.48 0.18 -0.99 16 6 C 0.35 4.53 5.67 71.23 0.40 4.94 16 7 F -0.18 -3.08 16.65 44.97 0.75 -2.33 16 8 F -0.19 -3.68 17.32 44.97 0.78 -2.90 16 9 C -0.21 -4.48 5.42 -18.74 -0.10 -4.58 16 10 C 0.61 15.93 7.66 86.66 0.66 16.59 16 11 O -0.56 -18.68 17.36 -4.04 -0.07 -18.75 16 12 N -0.60 -14.04 3.33 -815.67 -2.71 -16.75 16 13 C 0.10 2.02 6.47 86.73 0.56 2.58 16 14 C -0.11 -2.71 6.07 31.78 0.19 -2.52 16 15 C -0.10 -2.48 2.61 -9.40 -0.02 -2.50 16 16 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 17 C 0.19 6.26 2.43 44.99 0.11 6.36 16 18 H 0.05 1.79 8.00 -2.39 -0.02 1.77 16 19 C -0.16 -5.15 9.29 71.98 0.67 -4.49 16 20 N -0.75 -31.61 4.56 -322.93 -1.47 -33.08 16 21 C -0.22 -11.86 10.41 84.03 0.87 -10.99 16 22 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 23 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 24 N -0.99 -62.03 13.97 21.65 0.30 -61.72 16 25 Si 0.95 43.59 27.74 68.60 1.90 45.50 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 28 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 29 C 0.12 2.90 5.75 86.86 0.50 3.40 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.20 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.08 1.46 7.46 -2.39 -0.02 1.44 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.00 8.04 -2.39 -0.02 1.98 16 38 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.80 7.75 -2.39 -0.02 1.78 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.37 14.85 5.66 -92.71 -0.52 14.33 16 42 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 43 H 0.08 1.92 7.97 -2.38 -0.02 1.90 16 44 H 0.08 2.01 8.04 -2.39 -0.02 1.99 16 Total: -1.00 -73.95 379.66 5.83 -68.13 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.46 Total: 20.36 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.58 Total: 5.64 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -4.42 Total: -118.71 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.78 Total: -15.69 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.53 Total: -5.23 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.50 kcal Total: -73.95 5.83 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.210 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds